Crossref journal-article
Elsevier BV
Neoplasia (78)
Bibliography

Rhodes, D. R., Kalyana-Sundaram, S., Tomlins, S. A., Mahavisno, V., Kasper, N., Varambally, R., Barrette, T. R., Ghosh, D., Varambally, S., & Chinnaiyan, A. M. (2007). Molecular Concepts Analysis Links Tumors, Pathways, Mechanisms, and Drugs. Neoplasia, 9(5), 443-IN9.

Authors 10
  1. Daniel R. Rhodes (first)
  2. Shanker Kalyana-Sundaram (additional)
  3. Scott A. Tomlins (additional)
  4. Vasudeva Mahavisno (additional)
  5. Nicole Kasper (additional)
  6. Radhika Varambally (additional)
  7. Terrence R. Barrette (additional)
  8. Debashis Ghosh (additional)
  9. Sooryanarayana Varambally (additional)
  10. Arul M. Chinnaiyan (additional)
References 40 Referenced 121
  1. 10.1016/S0140-6736(03)14023-8 / Lancet / Gene expression profiling for the prediction of therapeutic response to docetaxel in patients with breast cancer by Chang (2003)
  2. 10.1186/gb-2006-7-3-r19 / Genome Biol / Deciphering cellular states of innate tumor drug responses by Graudens (2006)
  3. 10.1200/JCO.2006.05.6861 / J Clin Oncol / Pharmacogenomic predictor of sensitivity to preoperative chemotherapy with paclitaxel and fluorouracil, doxorubicin, and cyclophosphamide in breast cancer by Hess (2006)
  4. 10.1038/nm1491 / Nat Med / Genomic signatures to guide the use of chemotherapeutics by Potti (2006)
  5. 10.1056/NEJMoa012914 / N Engl J Med / The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma by Rosenwald (2002)
  6. 10.1056/NEJMoa021967 / N Engl J Med / A gene expression signature as a predictor of survival in breast cancer by van de Vijver (2002)
  7. 10.1038/nature04296 / Nature / Oncogenic pathway signatures in human cancers as a guide to targeted therapies by Bild (2006)
  8. 10.1126/science.1132939 / Science / The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease by Lamb (2006)
  9. 10.1073/pnas.0506580102 / Proc Natl Acad Sci USA / Gene Set Enrichment Analysis: a knowledge-based approach for interpreting genome-wide expression profiles by Subramanian (2005)
  10. 10.1186/gb-2005-6-9-r81 / Genome Biol / L2L: a simple tool for discovering the hidden significance in microarray expression data by Newman (2005)
  11. 10.1073/pnas.0401994101 / Proc Natl Acad Sci USA / Large-scale metaanalysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression by Rhodes (2004)
  12. 10.1093/nar/gkh036 / Nucleic Acids Res / The Gene Ontology (GO) database and informatics resource by Harris (2004)
  13. 10.1093/nar/gkh063 / Nucleic Acids Res / The KEGG resource for deciphering the genome by Kanehisa (2004)
  14. 10.1093/nar/gki106 / Nucleic Acids Res / InterPro, progress and status in 2005 by Mulder (2005)
  15. 10.1101/gr.1680803 / Genome Res / Development of Human Protein Reference Database as an initial platform for approaching systems biology in humans by Peri (2003)
  16. 10.1093/nar/gkg108 / Nucleic Acids Res / TRANSFAC: transcriptional regulation, from patterns to profiles by Matys (2003)
  17. 10.1038/nature03441 / Nature / Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals by Xie (2005)
  18. 10.1038/ng1536 / Nat Genet / Combinatorial microRNA target predictions by Krek (2005)
  19. 10.1016/S1476-5586(04)80047-2 / Neoplasia / ONCOMINE: a cancer microarray database and integrated data-mining platform by Rhodes (2004)
  20. 10.1093/bioinformatics/bth114 / Bioinformatics / PINdb: a database of nuclear protein complexes from human and yeast by Luc (2004)
  21. 10.1038/ng1578 / Nat Genet / Mining for regulatory programs in the cancer transcriptome by Rhodes (2005)
  22. 10.1016/j.semcancer.2006.07.015 / Semin Cancer Biol / The Myc oncoprotein as a therapeutic target for human cancer by Vita (2006)
  23. 10.1038/ng1752 / Nat Genet / Genetic regulators of large-scale transcriptional signatures in cancer by Adler (2006)
  24. 10.1093/nar/gkg794 / Nucleic Acids Res / A role for c-Myc in the regulation of ribosomal RNA processing by Schlosser (2003)
  25. 10.1056/NEJMoa055351 / N Engl J Med / A biologic definition of Burkitt's lymphoma from transcriptional and genomic profiling by Hummel (2006)
  26. 10.1016/j.ccr.2005.03.019 / Cancer Cell / Expression profiling using a tumor-specific cDNA microarray predicts the prognosis of intermediate risk neuroblastomas by Ohira (2005)
  27. 10.1002/ijc.10794 / Int J Cancer / 8g24 Copy number gains and expression of the c-myc mRNA stabi lizing protein CRD-BP in primary breast carcinomas by loannidis (2003)
  28. 10.1016/S0002-9440(10)65554-X / Am J Pathol / Genetic alterations in hormone-refractory recurrent prostate carcinomas by Nupponen (1998)
  29. 10.1016/S0145-2126(97)00006-4 / Leuk Res / Bcl-2 and c-myc expression, cell cycle kinetics and apoptosis during the progression of chronic myelogenous leukemia from diagnosis to blastic phase by Handa (1997)
  30. 10.1038/sj.emboj.7600279 / EMBO J / Myc-induced proliferation and transformation require Akt-mediated phosphorylation of FoxO proteins by Bouchard (2004)
  31. 10.1073/pnas.0409462102 / Proc Natl Acad Sci USA / Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival by Chang (2005)
  32. 10.1158/0008-5472.CAN-04-3953 / Cancer Res / A cell proliferation signature is a marker of extremely poor outcome in a subpopulation of breast cancer patients by Dai (2005)
  33. 10.1091/mbc.02-02-0030. / Mol Biol Cell / Identification of genes periodically expressed in the human cell cycle and their expression in tumors by Whiffield (2002)
  34. {'key': '10.1593/neo.07292_bib34', 'first-page': '8861', 'article-title': 'Patterns of chromosomal imbalances defines subgroups of breast cancer with dis tinct clinical features and prognosis', 'volume': '63', 'author': 'Rennstam', 'year': '2003', 'journal-title': 'A study of 305 tumors by comparative genomic hybridization. Cancer Res'} / A study of 305 tumors by comparative genomic hybridization. Cancer Res / Patterns of chromosomal imbalances defines subgroups of breast cancer with dis tinct clinical features and prognosis by Rennstam (2003)
  35. 10.1093/jn/131.8.2197 / J Nutr / Downregulation of the cyclin D1/Cdk4 complex occurs during resveratrol-induced cell cycle arrest in colon cancer cell lines by Wolter (2001)
  36. 10.1038/ng1935 / Nat Genet / Integrative molecular concept modeling of prostate cancer progression by Tomlins (2007)
  37. 10.1038/ng1305 / Nat Genet / Gene expression-based high-throughput screening (GE-HTS) and application to leukemia differentiation by Stegmaier (2004)
  38. 10.1038/sj.onc.1208498 / Oncogene / Molecular signature of retinoic acid treatment in acute promyelocytic leukemia by Meani (2005)
  39. 10.1080/1042819031000163887 / Leuk Lymphoma / Granulocytic differentiation of leukemic cells with t(9;11)(p22;g23) induced by all-trans-retinoic acid by lijima (2004)
  40. 10.1158/1078-0432.CCR-04-1155 / Clin Cancer Res / Retinoic acid and the histone deacetylase inhibitor trichostatin a inhibit the proliferation of human renal cell carcinoma in a xenograft tumor model by Touma (2005)
Dates
Type When
Created 18 years, 3 months ago (May 25, 2007, 2:47 a.m.)
Deposited 6 years, 4 months ago (April 28, 2019, 1:55 a.m.)
Indexed 1 year, 3 months ago (May 22, 2024, 11:12 a.m.)
Issued 18 years, 4 months ago (May 1, 2007)
Published 18 years, 4 months ago (May 1, 2007)
Published Print 18 years, 4 months ago (May 1, 2007)
Funders 0

None

@article{Rhodes_2007, title={Molecular Concepts Analysis Links Tumors, Pathways, Mechanisms, and Drugs}, volume={9}, ISSN={1476-5586}, url={http://dx.doi.org/10.1593/neo.07292}, DOI={10.1593/neo.07292}, number={5}, journal={Neoplasia}, publisher={Elsevier BV}, author={Rhodes, Daniel R. and Kalyana-Sundaram, Shanker and Tomlins, Scott A. and Mahavisno, Vasudeva and Kasper, Nicole and Varambally, Radhika and Barrette, Terrence R. and Ghosh, Debashis and Varambally, Sooryanarayana and Chinnaiyan, Arul M.}, year={2007}, month=may, pages={443-IN9} }