DOI: 10.1593/neo.07112. Oncomine 3.0: Genes, Pathways, and Networks in a Collection of 18,000 Cancer Gene Expression Profiles

Oncomine 3.0: Genes, Pathways, and Networks in a Collection of 18,000 Cancer Gene Expression Profiles

10.1593/neo.07112

Crossref journal-article

Elsevier BV

Neoplasia (78)

Bibliography

Rhodes, D. R., Kalyana-Sundaram, S., Mahavisno, V., Varambally, R., Yu, J., Briggs, B. B., Barrette, T. R., Anstet, M. J., Kincead-Beal, C., Kulkarni, P., Varambally, S., Ghosh, D., & Chinnaiyan, A. M. (2007). Oncomine 3.0: Genes, Pathways, and Networks in a Collection of 18,000 Cancer Gene Expression Profiles. Neoplasia, 9(2), 166â180.

Authors 13

Daniel R. Rhodes (first)
Shanker Kalyana-Sundaram (additional)
Vasudeva Mahavisno (additional)
Radhika Varambally (additional)
Jianjun Yu (additional)
Benjamin B. Briggs (additional)
Terrence R. Barrette (additional)
Matthew J. Anstet (additional)
Colleen Kincead-Beal (additional)
Prakash Kulkarni (additional)
Sooryanaryana Varambally (additional)
Debashis Ghosh (additional)
Arul M. Chinnaiyan (additional)

References 32 Referenced 1,613

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10.1093/nar/gki022 / Nucleic Acids Res / NCBI GEO: mining millions of expression profiles-database and tools by Barrett (2005)
10.1016/S1476-5586(04)80047-2 / Neoplasia / ONCOMINE: a cancer microarray database and integrated data-mining platform by Rhodes (2004)
10.1073/pnas.0401994101 / Proc Natl Acad Sci USA / Large-scale metaanalysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression by Rhodes (2004)
10.1038/ng1578 / Nat Genet / Mining for regulatory programs in the cancer transcriptome by Rhodes (2005)
10.1038/ng1570 / Nat Genet / Integrative analysis of the cancer transcriptome by Rhodes (2005)
10.1126/science.1117679 / Science / Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer by Tomlins (2005)
10.1093/nar/gki006 / Nucleic Acids Res / The Stanford Microarray Database accommodates additional microarray platforms and data formats by Ball (2005)
{'key': '10.1593/neo.07112_bib10', 'first-page': '33', 'article-title': 'NCI Thesaurus: using science-based terminology to integrate cancer research results', 'volume': '11', 'author': 'de Coronado', 'year': '2004', 'journal-title': 'Medinto'} / Medinto / NCI Thesaurus: using science-based terminology to integrate cancer research results by de Coronado (2004)
10.1073/pnas.1530509100 / Proc Natl Acad Sci USA / Statistical significance for genomewide studies by Storey (2003)
10.1146/annurev.immunol.22.012703.104753 / Annu Rev Immunol / The BCR-ABL story: bench to bedside and back by Wong (2004)
10.1056/NEJM200104053441401 / N Engl J Med / Efficacy and safety of a specific inhibitor of the BCR-ABL tyrosine kinase in chronic myeloid leukemia by Druker (2001)
10.1016/S0140-6736(04)17098-0 / Lancet / Progression-free survival in gastrointestinal stromal tumours with high-dose imatinib: randomised trial by Verweij (2004)
10.1161/01.RES.0000126925.66005.39 / Circ Res / Essential role of PDGFRalpha-p70S6K signaling in mesenchymal cells during therapeutic and tumor angiogenesis in vivo: role of PDGFRalpha during angiogenesis by Tsutsumi (2004)
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10.1038/ng1935 / Nat Genet / Integrative molecular concept modeling of prostate cancer progression by Tomlins (2007)
10.1093/nar/gkg014 / Nucleic Acids Res / SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data by Diehn (2003)
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10.1038/ng1536 / Nat Genet / Combinatorial microRNA target predictions by Krek (2005)
10.1038/35021093 / Nature / Molecular portraits of human breast tumours by Perou (2000)
10.1056/NEJMoa021967 / N Engl J Med / A geneexpression signature as a predictor of survival in breast cancer by van de Vijver (2002)

Dates

Type	When
Created	18 years, 6 months ago (Feb. 27, 2007, 6:05 p.m.)
Deposited	6 years, 7 months ago (Jan. 8, 2019, 9:20 p.m.)
Indexed	2 days, 2 hours ago (Aug. 30, 2025, 1:13 p.m.)
Issued	18 years, 7 months ago (Feb. 1, 2007)
Published	18 years, 7 months ago (Feb. 1, 2007)
Published Print	18 years, 7 months ago (Feb. 1, 2007)

Funders 0

None

BibTeX

@article{Rhodes_2007, title={Oncomine 3.0: Genes, Pathways, and Networks in a Collection of 18,000 Cancer Gene Expression Profiles}, volume={9}, ISSN={1476-5586}, url={http://dx.doi.org/10.1593/neo.07112}, DOI={10.1593/neo.07112}, number={2}, journal={Neoplasia}, publisher={Elsevier BV}, author={Rhodes, Daniel R. and Kalyana-Sundaram, Shanker and Mahavisno, Vasudeva and Varambally, Radhika and Yu, Jianjun and Briggs, Benjamin B. and Barrette, Terrence R. and Anstet, Matthew J. and Kincead-Beal, Colleen and Kulkarni, Prakash and Varambally, Sooryanaryana and Ghosh, Debashis and Chinnaiyan, Arul M.}, year={2007}, month=feb, pages={166–180} }

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    "date-time": "2019-01-09T02:20:13Z",
    "timestamp": 1547000413000
  },
  "score": 1,
  "resource": {
    "primary": {
      "URL": "https://linkinghub.elsevier.com/retrieve/pii/S1476558607800479"
    }
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  "subtitle": [],
  "short-title": [],
  "issued": {
    "date-parts": [
      [
        2007,
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      ]
    ]
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  "URL": "http://dx.doi.org/10.1593/neo.07112",
  "relation": {},
  "ISSN": [
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  "subject": [],
  "container-title-short": "Neoplasia",
  "published": {
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      [
        2007,
        2
      ]
    ]
  }
}