Crossref journal-article
Elsevier BV
Neoplasia (78)
Bibliography

Bashyam, M. D., Bair, R., Kim, Y. H., Wang, P., Hernandez-Boussard, T., Karikari, C. A., Tibshirani, R., Maitra, A., & Pollack, J. R. (2005). Array-Based Comparative Genomic Hybridization Identifies Localized DNA Amplifications and Homozygous Deletions in Pancreatic Cancer. Neoplasia, 7(6), 556-IN16.

Authors 9
  1. Murali D. Bashyam (first)
  2. Ryan Bair (additional)
  3. Young H. Kim (additional)
  4. Pei Wang (additional)
  5. Tina Hernandez-Boussard (additional)
  6. Collins A. Karikari (additional)
  7. Robert Tibshirani (additional)
  8. Anirban Maitra (additional)
  9. Jonathan R. Pollack (additional)
References 48 Referenced 145
  1. 10.3322/canjclin.54.1.8 / CA Cancer J Clin / Cancer statistics, 2004 by Jemal (2004)
  2. 10.1038/nrc949 / Nat Rev Cancer / Pancreatic cancer biology and genetics by Bardeesy (2002)
  3. {'key': '10.1593/neo.04586_bib3', 'first-page': '370', 'article-title': 'Amplifications of both c-Ki-ras with a point mutation and c-myc in a primary pancreatic cancer and its metastatic tumors in lymph nodes', 'volume': '77', 'author': 'Yamada', 'year': '1986', 'journal-title': 'Jpn J Cancer Res'} / Jpn J Cancer Res / Amplifications of both c-Ki-ras with a point mutation and c-myc in a primary pancreatic cancer and its metastatic tumors in lymph nodes by Yamada (1986)
  4. {'key': '10.1593/neo.04586_bib4', 'first-page': '3803', 'article-title': 'Mapping of chromosomal imbalances in pancreatic carcinoma by comparative genomic hybridization', 'volume': '56', 'author': 'Solinas-Toldo', 'year': '1996', 'journal-title': 'Cancer Res'} / Cancer Res / Mapping of chromosomal imbalances in pancreatic carcinoma by comparative genomic hybridization by Solinas-Toldo (1996)
  5. 10.1126/science.8153634 / Science / A cell cycle regulator potentially involved in genesis of many tumor types by Kamb (1994)
  6. 10.1126/science.271.5247.350 / Science / DPC4, a candidate tumor suppressor gene at human chromosome 18g21.1 by Hahn (1996)
  7. 10.1126/science.1359641 / Science / Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors by Kallioniemi (1992)
  8. 10.1038/2524 / Nat Genet / High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays by Pinkel (1998)
  9. 10.1038/12640 / Nat Genet / Genomewide analysis of DNA copy-number changes using cDNA microarrays by Pollack (1999)
  10. 10.1101/gr.138300 / Genome Res / Detecting gene copy number fluctuations in tumor cells by microarray analysis of genomic representations by Lucito (2000)
  11. 10.1007/s001090050155 / J Mol Med / Pieces of the puzzle: expressed sequence tags and the catalog of human genes by Schuler (1997)
  12. 10.1073/pnas.162471999 / Proc Natl Acad Sci USA / Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors by Pollack (2002)
  13. 10.1073/pnas.0304146101 / Proc Natl Acad Sci USA / Gene expression profiling identifies clinically relevant subtypes of prostate cancer by Lapointe (2004)
  14. 10.1093/nar/gkg078 / Nucleic Acids Res / The Stanford Microarray Database: data access and quality assessment tools by Gollub (2003)
  15. 10.1093/biostatistics/kxh017 / Biostatistics / A method for calling gains and losses in array CGH data by Wang (2005)
  16. 10.1002/(SICI)1098-2264(199712)20:4<383::AID-GCC10>3.0.CO;2-O / Genes Chromosomes Cancer / Comparative genomic hybridization reveals frequent gains of 20q, 8q, 11 q, 12p, and 17q, and losses of 18q, 9p, and 15q in pancreatic cancer by Mahlamaki (1997)
  17. 10.1006/geno.1998.5405 / Genomics / Amplification of DNA sequences from chromosome 19813.1 inhuman pancreatic cell lines by Curtis (1998)
  18. 10.1016/S0002-9440(10)65298-4 / Am J Pathol / Specific chromosomal aberrations and amplification of the AIB1 nuclear receptor coactivator gene in pancreatic carcinomas by Ghadimi (1999)
  19. 10.1002/(SICI)1096-9896(200005)191:1<27::AID-PATH582>3.0.CO;2-J / J Pathol / Identification of frequent chromosomal aberrations in ductal adenocarcinoma of the pancreas by comparative genomic hybridization (CGH) by Schleger (2000)
  20. 10.1159/000059573 / Oncology / Detection of genetic alterations in pancreatic cancers by comparative genomic hybridization coupled with tissue microdissection and degenerate oligonucleotide primed polymerase chain reaction by Harada (2002)
  21. 10.1002/(SICI)1097-0215(19970611)71:6<993::AID-IJC15>3.0.CO;2-7 / Int J Cancer / Human pancreatic cancer cells (MPanc-96) recognized by autologous tumor-infiltrating lymphocytes after in vitro as well as in vivo tumor expansion by Peiper (1997)
  22. 10.1007/BF02796382 / In Vitro / Human pancreatic adenocarcinoma: in vitro and in vivo morphology of anew tumor line established from ascites by Chen (1982)
  23. 10.1002/gcc.10063 / Genes Chromosomes Cancer / Detailed genomic mapping and expression analyses of 12p amplifications in pancreatic carcinomas reveal a 3.5-Mb target region for amplification by Heidenblad (2002)
  24. 10.1073/pnas.93.8.3636 / Proc Natl Acad Sci USA / Amplification of AKT2 in human pancreatic cells and inhibition of AKT2 expression and tumorigenicity by antisense RNA by Cheng (1996)
  25. 10.1038/75985 / Nat Genet / Quantitative mapping of amplicon structure by array CGH identifies CYP24 as a candidate oncogene by Albertson (2000)
  26. 10.1074/jbc.C100008200 / J Biol Chem / Smurf1 interacts with transforming growth factor-beta type I receptor through Smad7 and induces receptor degradation by Ebisawa (2001)
  27. 10.1016/S0962-8924(99)01651-7 / Trends Cell Biol / The world according to Arp: regulation of actin nucleation by the Arp2/3 complex by Welch (1999)
  28. 10.1016/S0092-8674(00)81479-8 / Cell / The novel ATM-related protein TRRAP is an essential cofactor for the c-Myc and E2F oncoproteins by McMahon (1998)
  29. 10.1038/sj.onc.1207101 / Oncogene / The inhibitors of apoptosis: there is more to life than Bcl2 by Liston (2003)
  30. 10.1016/S0092-8674(03)00432-X / Cell / Mechanisms of TGF-beta signaling from cell membrane to the nucleus by Shi (2003)
  31. 10.1002/(SICI)1098-2264(200004)27:4<353::AID-GCC3>3.0.CO;2-5 / Genes Chromosomes Cancer / Homozygous deletions inactivate DCC, but not MADH4/DPC4/SMAD4, in a subset of pancreatic and biliary cancers by Hilgers (2000)
  32. 10.1006/geno.1996.0322 / Genomics / Structure and methylation-associated silencing of a gene within a homozygously deleted region of human chromosome band 8p22 by MacGrogan (1996)
  33. 10.1002/path.1415 / J Pathol / Tenascins: regulation and putative functions during pathological stress by Chiquet-Ehrismann (2003)
  34. 10.1096/fasebj.13.1.181 / FASEB J / VEGI, a novel cytokine of the tumor necrosis factor family, is an angiogenesis inhibitor that suppresses the growth of colon carcinomas in vivo by Zhai (1999)
  35. 10.1016/S0092-8674(00)80344-X / Cell / Identification and characterization of an IkappaB kinase by Regnier (1997)
  36. 10.1016/S0378-1119(99)00365-0 / Gene / Functional and structural diversity of the human Dickkopf gene family by Krupnik (1999)
  37. 10.1158/0008-5472.CAN-03-1952 / Cancer Res / Dickkopf 3 inhibits invasion and motility of Saos-2 osteosarcoma cells by modulating the Wnt-betacatenin pathway by Hoang (2004)
  38. 10.1016/S0968-0004(02)02141-2 / Trends Biochem Sci / Unsafe SETS: histone lysine methyltransferases and cancer by Schneider (2002)
  39. 10.1093/embo-reports/kvf236 / EMBO Rep / RIP4 (DIK/PKK), a novel member of the RIP kinase family, activates NF-kappa B and is processed during apoptosis by Meylan (2002)
  40. 10.1016/S0165-4608(99)00012-6 / Cancer Genet Cytogenet / Identification of a novel amplicon at 1q31 in pancreatic cancer cell lines by Tirado (1999)
  41. 10.1002/gcc.2870100403 / Genes Chromosomes Cancer / Optimizing comparative genomic hybridization for analysis of DNA sequence copy number changes in solid tumors by Kallioniemi (1994)
  42. 10.1158/0008-5472.CAN-04-0431 / Cancer Res / Genomic DNA-chip hybridization reveals a higher incidence of genomic amplifications in pancreatic cancer than conventional comparative genomic hybridization and leads to the identification of novel candidate genes by Holzmann (2004)
  43. 10.1073/pnas.0402932101 / Proc Natl Acad Sci USA / High-resolution characterization of the pancreatic adenocarcinoma genome by Aguirre (2004)
  44. 10.1158/0008-5472.CAN-03-3159 / Cancer Res / Genome-wide array-based comparative genomic hybridization reveals multiple amplification tar gets and novel homozygous deletions in pancreatic carcinoma cell lines by Heidenblad (2004)
  45. 10.1158/0008-5472.CAN-04-0018 / Cancer Res / Targeting endogenous transforming growth factor beta receptor signaling in SMAD4-deficient human pan creatic carcinoma cells inhibits their invasive phenotype 1 by Subramanian (2004)
  46. 10.1038/sj.onc.1207230 / Oncogene / To be, or not to be: NF-kappaB is the answer-role of Rel/NF-kappaB in the regulation of apoptosis by Kucharczak (2003)
  47. 10.1080/00313020410001671957 / Pathology / The significance of the Wnt pathway in the pathology of human cancers by Karim (2004)
  48. {'key': '10.1593/neo.04586_bib48', 'first-page': '369', 'article-title': 'Beta- and gamma-catenin mutations, but not E-cadherin inactivation, underlie T-cell factor/lymphoid enhancer factor transcriptional deregulation in gastric and pancreatic cancer', 'volume': '10', 'author': 'Caca', 'year': '1999', 'journal-title': 'Cell Growth Differ'} / Cell Growth Differ / Beta- and gamma-catenin mutations, but not E-cadherin inactivation, underlie T-cell factor/lymphoid enhancer factor transcriptional deregulation in gastric and pancreatic cancer by Caca (1999)
Dates
Type When
Created 20 years, 1 month ago (July 28, 2005, 4:58 a.m.)
Deposited 1 year, 3 months ago (May 21, 2024, 2:43 p.m.)
Indexed 1 year ago (Aug. 8, 2024, 7:08 p.m.)
Issued 20 years, 3 months ago (June 1, 2005)
Published 20 years, 3 months ago (June 1, 2005)
Published Print 20 years, 3 months ago (June 1, 2005)
Funders 0

None

@article{Bashyam_2005, title={Array-Based Comparative Genomic Hybridization Identifies Localized DNA Amplifications and Homozygous Deletions in Pancreatic Cancer}, volume={7}, ISSN={1476-5586}, url={http://dx.doi.org/10.1593/neo.04586}, DOI={10.1593/neo.04586}, number={6}, journal={Neoplasia}, publisher={Elsevier BV}, author={Bashyam, Murali D. and Bair, Ryan and Kim, Young H. and Wang, Pei and Hernandez-Boussard, Tina and Karikari, Collins A. and Tibshirani, Robert and Maitra, Anirban and Pollack, Jonathan R.}, year={2005}, month=jun, pages={556-IN16} }