Abstract
We report studies of the mechanical properties of tropocollagen molecules under different types of mechanical loading including tension, compression, shear, and bending. Our modeling yields predictions of the fracture strength of single tropocollagen molecules and polypeptides, and also allows for quantification of the interactions between tropocollagen molecules. Atomistic modeling predicts a persistence length of tropocollagen molecules ξ ≈ 23.4 nm, close to experimental measurements. Our studies suggest that to describe large-strain or hyperelastic properties, it is critical to include a correct description of the bond behavior and breaking processes at large bond stretch, information that stems from the quantum chemical details of bonding. We use full atomistic calculations to derive parameters for a mesoscopic bead-spring model of tropocollagen molecules. We demonstrate that the mesoscopic model enables one to study the finite temperature, long-time scale behavior of tropocollagen fibers, illustrating the dynamics of solvated tropocollagen molecules for different molecular lengths.
References
59
Referenced
255
{'key': 'S0884291400083710_ref034', 'volume-title': 'Collagen self-assembly: A complementary experimental and theoretical perspective', 'author': 'Anderson', 'year': '2005'}
/ Collagen self-assembly: A complementary experimental and theoretical perspective by Anderson (2005)10.1002/jcc.20289
10.1038/nature04408
10.1038/nature02096
10.1016/j.jtbi.2004.04.018
10.1021/bi048216r
10.1002/bip.10123
{'key': 'S0884291400083710_ref009', 'first-page': '124', 'article-title': 'Collagens—Why such a complicated structure.', 'volume': '187', 'author': 'Borel', 'year': '1993', 'journal-title': 'C. R. Seances Soc. Biol. Fil.'}
/ C. R. Seances Soc. Biol. Fil. / Collagens—Why such a complicated structure. by Borel (1993)10.1038/nature02388
10.1126/science.1122125
10.1002/1097-0282(200103)58:3<347::AID-BIP1011>3.0.CO;2-M
10.1002/cbic.200500201
10.1016/S0021-9290(00)00018-X
10.1021/jp051450m
{'key': 'S0884291400083710_ref050', 'first-page': '327', 'volume-title': 'Combinatorial Methods and Informatics in Materials Science', 'volume': '894', 'author': 'Buehler', 'year': '2006'}
/ Combinatorial Methods and Informatics in Materials Science by Buehler (2006){'key': 'S0884291400083710_ref016', 'first-page': '239', 'article-title': 'Flexibility of type I collagen and mechanical property of connective tissue.', 'volume': '41', 'author': 'An', 'year': '2004', 'journal-title': 'Biorheology'}
/ Biorheology / Flexibility of type I collagen and mechanical property of connective tissue. by An (2004)10.1074/mcp.M200064-MCP200
10.1093/protein/gzi037
- 48. Datta D. , Duin A.C.T.V. , and Goddard W.A. : Extending ReaxFF to biomacromolecules. (2005, unpublished).
10.1080/15216540500090710
10.1016/S0006-291X(02)00685-X
{'key': 'S0884291400083710_ref033', 'first-page': '251', 'article-title': 'NAMD: A parallel, object oriented molecular dynamics program.', 'volume': '10', 'author': 'Nelson', 'year': '1996', 'journal-title': 'Int. J. Supercomp. Appl. High Perf. Comput.'}
/ Int. J. Supercomp. Appl. High Perf. Comput. / NAMD: A parallel, object oriented molecular dynamics program. by Nelson (1996)10.1006/jmbi.2000.4017
10.1016/0263-7855(96)00018-5
{'key': 'S0884291400083710_ref044', 'first-page': '3803', 'article-title': 'Thermal decomposition of RDX from reactive molecular dynamics.', 'volume': '107', 'author': 'Strachan', 'year': '2005', 'journal-title': 'J. Chem. Phys.'}
/ J. Chem. Phys. / Thermal decomposition of RDX from reactive molecular dynamics. by Strachan (2005)10.1016/j.copbio.2005.06.009
10.1021/jp046244d
{'key': 'S0884291400083710_ref010', 'first-page': '437', 'volume-title': 'Advances in Protein Chemistry', 'volume': 'Vol. 70', 'author': 'Mithieux', 'year': '2005'}
/ Advances in Protein Chemistry by Mithieux (2005){'key': 'S0884291400083710_ref053', 'volume-title': 'Computer Simulation of Liquids', 'author': 'Allen', 'year': '1989'}
/ Computer Simulation of Liquids by Allen (1989)10.1021/j100161a070
10.1051/epjap:2001009
10.1023/A:1023474909980
10.1016/j.jbiomech.2004.07.011
10.1126/science.281.5375.389
10.1016/j.mejo.2005.04.051
10.1016/j.medengphy.2005.02.006
10.1063/1.481208
10.1529/biophysj.104.055228
10.1145/364338.364398
10.1016/S0021-9290(02)00080-5
10.1021/jp0276303
10.1021/jp004368u
10.1103/PhysRevLett.96.095505
10.1021/jp0460184
10.1021/jp046244d
- 47. Tao L. , Buehler M.J. , Duin A.C.T.v. , Goddard W.A. Mixed hybrid Dreiding-ReaxFF calculations for modeling enzymatic reactions in proteins. (2005, unpublished).
10.1209/0295-5075/26/8/005
10.1006/jcph.1995.1039
10.1023/B:FRAC.0000040958.04896.43
10.1016/j.biomaterials.2004.02.017
10.1016/S0142-9612(03)00278-3
10.1021/ja050980t
10.1016/S0945-053X(98)90023-3
10.1016/0010-4655(95)00041-D
10.1002/anie.200462415
10.1016/j.jbiomech.2004.02.028
10.1103/PhysRevLett.91.098301
10.1021/jp973084f
{'key': 'S0884291400083710_ref035', 'first-page': '783', 'article-title': 'A second-generation reactive empirical bond order (REBO) potential energy expression for hydrocarbons.', 'volume': '14', 'author': 'Brenner', 'year': '2002', 'journal-title': 'J. Phys.: Condens. Matter'}
/ J. Phys.: Condens. Matter / A second-generation reactive empirical bond order (REBO) potential energy expression for hydrocarbons. by Brenner (2002)
@article{Buehler_2006, title={Atomistic and continuum modeling of mechanical properties of collagen: Elasticity, fracture, and self-assembly}, volume={21}, ISSN={2044-5326}, url={http://dx.doi.org/10.1557/jmr.2006.0236}, DOI={10.1557/jmr.2006.0236}, number={8}, journal={Journal of Materials Research}, publisher={Springer Science and Business Media LLC}, author={Buehler, Markus J.}, year={2006}, month=aug, pages={1947–1961} }