DOI: 10.1529/biophysj.107.116285. Bayesian Inference for Improved Single Molecule Fluorescence Tracking

Bayesian Inference for Improved Single Molecule Fluorescence Tracking

10.1529/biophysj.107.116285

Crossref journal-article

Elsevier BV

Biophysical Journal (78)

Bibliography

Yoon, J. W., Bruckbauer, A., Fitzgerald, W. J., & Klenerman, D. (2008). Bayesian Inference for Improved Single Molecule Fluorescence Tracking. Biophysical Journal, 94(12), 4932â4947.

Authors 4

Ji Won Yoon (first)
Andreas Bruckbauer (additional)
William J. Fitzgerald (additional)
David Klenerman (additional)

References 36 Referenced 41

10.1021/cr980132z / Chem. Rev. / Single molecule fluorescence spectroscopy at ambient temperature by Ambrose (1999)
10.1063/1.1589587 / Rev. Sci. Instrum. / Methods of single-molecule fluorescence spectroscopy and microscopy by Moerner (2003)
10.1146/annurev.biophys.26.1.567 / Annu. Rev. Biophys. Biomol. Struct. / Optical detection of single molecules by Nie (1997)
{'key': '10.1529/biophysj.107.116285_bib4', 'series-title': 'IEEE International Symposium on Biomedical Imaging', 'article-title': 'A multiple target approach for single quantum dot tracking', 'author': 'Bonneau', 'year': '2004'} / IEEE International Symposium on Biomedical Imaging / A multiple target approach for single quantum dot tracking by Bonneau (2004)
10.1109/TIP.2005.852787 / IEEE Trans. Image Process / Automatic tracking of individual fluorescence particles: application to the study of chromosome dynamics by Sage (2005)
10.1529/biophysj.107.104737 / Biophys. J. / Nanopipette delivery of individual molecules to cellular compartments for single molecule fluorescence tracking by Bruckbauer (2007)
10.1016/S0006-3495(00)76467-8 / Biophys. J. / Tracking single proteins within cells by Goulian (2000)
10.1006/jcis.1996.0217 / J. Colloid Interface Sci. / Methods of digital video microscopy for colloidal studies by Crocker (1996)
10.1002/1438-5171(200009)1:3<225::AID-SIMO225>3.0.CO;2-O / Single Mol. / Positional and temporal accuracy of single molecule tracking by Enderlein (2000)
10.1046/j.1365-2818.2003.01223.x / J. Microsc. / Automatic fluorescent tag localization II: improvement in super-resolution by relative tracking by Thomann (2003)
10.1021/la060244i / Langmuir / Methods to track single-molecule trajectories by Anthony (2006)
{'key': '10.1529/biophysj.107.116285_bib12', 'series-title': 'Beyond the Kalman Filter: Particle Filters for Tracking Applications', 'author': 'Ristic', 'year': '2004'} / Beyond the Kalman Filter: Particle Filters for Tracking Applications by Ristic (2004)
{'key': '10.1529/biophysj.107.116285_bib13', 'series-title': 'European Signal Processing Conference (EUSIPCO)', 'article-title': 'Bayesian inference for multidimensional NMR image reconstruction', 'author': 'Yoon', 'year': '2006'} / European Signal Processing Conference (EUSIPCO) / Bayesian inference for multidimensional NMR image reconstruction by Yoon (2006)
{'key': '10.1529/biophysj.107.116285_bib14', 'series-title': 'Bioinformatics Research and Development (BIRD), Lecture Note in Bioinformatics', 'article-title': 'Bayesian Inference for 2D gel electrophoresis image analysis', 'author': 'Yoon', 'year': '2007'} / Bioinformatics Research and Development (BIRD), Lecture Note in Bioinformatics / Bayesian Inference for 2D gel electrophoresis image analysis by Yoon (2007)
10.1109/TAES.2005.1561892 / IEEE Trans. Aerosp. Electron. Syst. / Multitarget tracking using a particle filter representation of the joint multitarget density by Kreucher (2005)
10.1109/ACC.2001.946220 / Proc. Am. Control Conf. / A particle filter for track-before-detect by Salmond (2001)
10.1016/j.jsb.2005.06.002 / J. Struct. Biol. / Feature point tracking and trajectory analysis for video imaging in cell biology by Sbalzarini (2005)
{'key': '10.1529/biophysj.107.116285_bib18', 'series-title': 'Information Theory, Inference, and Learning Algorithms', 'author': 'MacKay', 'year': '2003'} / Information Theory, Inference, and Learning Algorithms by MacKay (2003)
{'key': '10.1529/biophysj.107.116285_bib19', 'series-title': 'Bayesian Theory', 'author': 'Bernardo', 'year': '1995'} / Bayesian Theory by Bernardo (1995)
{'key': '10.1529/biophysj.107.116285_bib20', 'article-title': 'Various techniques used in connection with random digits', 'volume': 'Vol. 12', 'author': 'Neumann', 'year': '1951'} / Various techniques used in connection with random digits by Neumann (1951)
Marshall, A. 1956. The use of multi-stage sampling schemes in Monte Carlo computations. Symposium on Monte Carlo Methods, New York.
{'key': '10.1529/biophysj.107.116285_bib22', 'series-title': 'Monte Carlo Strategies in Scientific Computing', 'author': 'Liu', 'year': '2001'} / Monte Carlo Strategies in Scientific Computing by Liu (2001)
{'key': '10.1529/biophysj.107.116285_bib23', 'first-page': '543', 'article-title': 'A noniterative sampling/importance resampling alternative to the data augmentation algorithm for creating a few imputations when fractions of missing information are modest: the SIR algorithm', 'volume': '52', 'author': 'Rubin', 'year': '1987', 'journal-title': 'J. Am. Stat. Assoc.'} / J. Am. Stat. Assoc. / A noniterative sampling/importance resampling alternative to the data augmentation algorithm for creating a few imputations when fractions of missing information are modest: the SIR algorithm by Rubin (1987)
{'key': '10.1529/biophysj.107.116285_bib24', 'series-title': 'Sequential Monte Carlo Methods in Practice', 'author': 'Doucet', 'year': '2001'} / Sequential Monte Carlo Methods in Practice by Doucet (2001)
10.1023/A:1008935410038 / Stat. Comput. / On sequential Monte Carlo sampling methods for Bayesian filtering by Doucet (2000)
10.1080/01621459.1998.10473765 / J. Am. Stat. Assoc. / Sequential Monte Carlo methods for dynamic systems by Lie (1998)
10.1111/j.1467-9868.2006.00553.x / J. Roy. Stat. Soc. B / Sequential Monte Carlo samplers by Moral (2006)
{'key': '10.1529/biophysj.107.116285_bib28', 'series-title': 'IEEE Workshop on Statistical Signal Processing', 'article-title': 'Radial basis function regression using trans-dimensional sequential Monte Carlo', 'author': 'Vermaak', 'year': '2003'} / IEEE Workshop on Statistical Signal Processing / Radial basis function regression using trans-dimensional sequential Monte Carlo by Vermaak (2003)
10.1093/biomet/83.1.81 / Biometrika / Rao-Blackwellization of sampling schemes by Casella (1996)
10.1109/29.60107 / IEEE Trans. Acoust. Speech Signal Process / Adaptive multiple-band CFAR detection of an optical pattern with unknown spectral distribution by Reed (1990)
10.1109/78.978374 / IEEE Trans. Signal Process / A tutorial on particle filters for online nonlinear/non-Gaussian Bayesian tracking by Arulampalam (2002)
Bilmes, J. 1997. A gentle tutorial on the EMAlgorithm and its application to parameter estimation for Gaussian mixture and hidden Markov models. Technical report No. ICSI-TR-97–021, University of Berkeley, Berkeley, CA.
{'key': '10.1529/biophysj.107.116285_bib33', 'series-title': 'Spatial Cluster Modeling', 'article-title': 'Perfect sampling for point process cluster modeling', 'author': 'McKeague', 'year': '2002'} / Spatial Cluster Modeling / Perfect sampling for point process cluster modeling by McKeague (2002)
Castelloe, J. M., and D. L. Zimmerman. 2002. On maximum likelihood estimation of a spatial Poisson cluster process. Technical Report 312, Department of Statistics and Actuarial Science, The University of Iowa, Iowa City.
10.1016/S0006-3495(02)75618-X / Biophys. J. / Precise nanometer localization analysis for individual fluorescent probes by Thompson (2002)
10.1063/1.1138619 / Rev. Sci. Instrum. / Position measurement with a resolution and noise-limited instrument by Bobroff (1986)

Dates

Type	When
Created	17 years, 5 months ago (March 13, 2008, 9:06 p.m.)
Deposited	6 years, 7 months ago (Dec. 30, 2018, 9:25 p.m.)
Indexed	1 year, 2 months ago (June 15, 2024, 5:15 p.m.)
Issued	17 years, 2 months ago (June 1, 2008)
Published	17 years, 2 months ago (June 1, 2008)
Published Print	17 years, 2 months ago (June 1, 2008)

Funders 0

None

BibTeX

@article{Yoon_2008, title={Bayesian Inference for Improved Single Molecule Fluorescence Tracking}, volume={94}, ISSN={0006-3495}, url={http://dx.doi.org/10.1529/biophysj.107.116285}, DOI={10.1529/biophysj.107.116285}, number={12}, journal={Biophysical Journal}, publisher={Elsevier BV}, author={Yoon, Ji Won and Bruckbauer, Andreas and Fitzgerald, William J. and Klenerman, David}, year={2008}, month=jun, pages={4932–4947} }

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    "published-print": {
      "date-parts": [
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          6
        ]
      ]
    }
  },
  "alternative-id": [
    "S0006349508703588"
  ],
  "URL": "http://dx.doi.org/10.1529/biophysj.107.116285",
  "relation": {},
  "ISSN": [
    "0006-3495"
  ],
  "subject": [],
  "container-title-short": "Biophysical Journal",
  "published": {
    "date-parts": [
      [
        2008,
        6
      ]
    ]
  }
}