Crossref
journal-article
Elsevier BV
Biophysical Journal (78)
References
63
Referenced
85
{'year': '1944', 'series-title': 'What is Life?', 'author': 'Schrödinger', 'key': '10.1529/biophysj.107.105767_bib1'}
/ What is Life? by Schrödinger (1944)10.1038/nature02257
/ Nature / Summing up the noise in gene networks by Paulsson (2004)10.1016/j.plrev.2005.03.003
/ Phys. Life Rev. / Models of stochastic gene expression by Paulsson (2005)10.1038/nrg1615
/ Nat. Rev. Gen. / Stochasticity in gene expression: from theories to phenotypes by Kærn (2005)10.1126/science.1070919
/ Science / Stochastic gene expression in a single cell by Elowitz (2002)10.1126/science.1109090
/ Science / Noise propagation in gene networks by Pedraza (2005)10.1126/science.1119623
/ Science / Probing gene expression in live cells, one protein molecule at a time by Yu (2006)10.1038/nrm1588
/ Nat. Rev. Mol. Cell Biol. / Thinking quantitatively about transcriptional regulation by Greive (2005)10.1073/pnas.88.6.2307
/ Proc. Natl. Acad. Sci. USA / Transcription elongation and termination are competitive kinetic processes by von Hippel (1991)10.1063/1.2213613
/ Chaos / Noise in genetic and neural networks by Swain (2006)10.1016/j.cell.2005.09.031
/ Cell / Real-time kinetics of gene activity in individual bacteria by Golding (2005)10.1146/annurev.biophys.35.010406.150153
/ Annu. Rev. Biophys. Biomol. Struct. / Single-molecule analysis of RNA polymerase transcription by Bai (2006)10.1073/pnas.0230489100
/ Proc. Natl. Acad. Sci. USA / Sequence information can be obtained from single DNA molecules by Braslavsky (2003)10.1016/0022-2836(84)90262-6
/ J. Mol. Biol. / Mechanism of CRP-cAMP activation of lac operon transcription initiation activation of the P1 promoter by Malan (1984)10.1146/annurev.bi.54.070185.001131
/ Annu. Rev. Biochem. / Mechanisms and control of transcription initiation in prokaryotes by McClure (1985)10.1006/jmbi.1996.0230
/ J. Mol. Biol. / Transcription activation parameters at ara pBAD by Zhang (1996)10.1074/jbc.M310471200
/ J. Biol. Chem. / Promoter binding, initiation, and elongation by bacteriophage T7 RNA polymerase by Skinner (2004)10.1038/nrm1981
/ Nat. Rev. Mol. Cell Biol. / Breaking barriers to transcription elongation by Saunders (2006)10.1038/nature02191
/ Nature / Backtracking by single RNA polymerase molecules observed at near base pair resolution by Shaevitz (2003)10.1016/S0092-8674(03)00845-6
/ Cell / Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking by Neuman (2003)10.1016/j.cell.2006.04.032
/ Cell / Sequence-resolved detection of pausing by single RNA polymerase molecules by Herbert (2006)10.1073/pnas.142417799
/ Proc. Natl. Acad. Sci. USA / Using mechanical force to probe the mechanism of pausing and arrest during continuous elongation by Escherichia coli RNA polymerase by Forde (2002)10.1126/science.1127422
/ Science / Transcript-assisted transcriptional proofreading by Zenkin (2006)10.1016/j.cell.2004.07.021
/ Cell / Regulation of RNA polymerase through the secondary channel by Nickels (2004)10.1074/jbc.273.27.16843
/ J. Biol. Chem. / Recognition of a human arrest site is conserved between RNA polymerase II and prokaryotic RNA polymerases by Mote (1998)10.1006/jmbi.1996.0707
/ J. Mol. Biol. / A model for the mechanism of polymerase translocation by Guajardo (1997)10.1016/S0006-3495(98)77833-6
/ Biophys. J. / Motion of RNA polymerase along DNA: a stochastic model by Julicher (1998)10.1016/j.jmb.2004.08.107
/ J. Mol. Biol. / Sequence-dependent kinetic model for transcription elongation by RNA polymerase by Bai (2004)10.1073/pnas.0600508103
/ Proc. Natl. Acad. Sci. USA / Thermodynamic and kinetic modeling of transcription pausing by Tadigotla (2006)10.1371/journal.pbio.0040309
/ PLOS Biol. / Stochastic mRNA synthesis in mammalian cells by Raj (2006)10.1016/j.cub.2006.03.092
/ Curr. Biol. / Transcriptional pulsing of a developmental gene by Chubb (2006)10.1126/science.289.5479.619
/ Science / A structural model of transcription elongation by Korzheva (2000)10.1016/S0092-8674(00)80180-4
/ Cell / The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase by Nudler (1997)10.1073/pnas.94.5.1755
/ Proc. Natl. Acad. Sci. USA / Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3′ end of the RNA intact and extruded by Komissarova (1997){'key': '10.1529/biophysj.107.105767_bib35', 'first-page': '459', 'article-title': 'Transcript cleavage factor from', 'volume': '72', 'author': 'Borukhov', 'year': '1993', 'journal-title': 'E. coli. Cell'}
/ E. coli. Cell / Transcript cleavage factor from by Borukhov (1993)10.1016/S0167-4781(02)00459-1
/ Biochim. Biophys. Acta / Promoting elongation with transcript cleavage stimulatory factors by Fish (2002){'year': '1992', 'series-title': 'Stochastic Processes in Physics and Chemistry', 'author': 'van Kampen', 'key': '10.1529/biophysj.107.105767_bib37'}
/ Stochastic Processes in Physics and Chemistry by van Kampen (1992){'year': '2004', 'series-title': 'Handbook of Stochastic Methods for Physics, Chemistry, and the Natural Sciences', 'author': 'Gardiner', 'key': '10.1529/biophysj.107.105767_bib38'}
/ Handbook of Stochastic Methods for Physics, Chemistry, and the Natural Sciences by Gardiner (2004){'year': '2001', 'series-title': 'A Guide to First-Passage Processes', 'author': 'Redner', 'key': '10.1529/biophysj.107.105767_bib39'}
/ A Guide to First-Passage Processes by Redner (2001)10.1128/jb.173.20.6647-6649.1991
/ J. Bacteriol. / rRNA transcription rate in Escherichia coli by Gotta (1991)10.1103/PhysRevE.52.2912
/ Phys. Rev. E / Statistical mechanics of supercoiled DNA by Marko (1995)10.1103/PhysRevE.69.061907
/ Phys. Rev. E / Statistical mechanics of double-helical polymers by Col (2004)10.1007/BF01052811
/ J. Stat. Phys. / Exact solution of the totally asymmetric simple exclusion process: shock profiles by Derrida (1993)10.1103/PhysRevLett.74.208
/ Phys. Rev. Lett. / Spontaneous symmetry breaking in a one-dimensional driven diffusive system by Evans (1995)10.1016/0167-4781(95)00042-F
/ Biochim. Biophys. Acta / Guanosine tetraphosphate as a global regulator of bacterial RNA synthesis: a model involving RNA polymerase pausing and queuing by Bremer (1995)10.1073/pnas.97.13.7090
/ Proc. Natl. Acad. Sci. USA / Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals by Artsimovitch (2000)10.1016/j.cell.2007.01.015
/ Cell / The role of chromatin during transcription by Li (2007)10.1016/j.molcel.2006.09.012
/ Mol. Cell. / RSC Exploits histone acetylation to abrogate the nucleosomal block to RNA polymerase II elongation by Carey (2006)10.1529/biophysj.106.086157
/ Biophys. J. / Diffusion of transcription factors can drastically enhance the noise in gene expression by van Zon (2006)10.1021/bi00368a013
/ Biochemistry / An RNA polymerase mutant with reduced accuracy of chain elongation by Blank (1986)- Reference deleted in proof.
10.1073/pnas.90.17.7923
/ Proc. Natl. Acad. Sci. USA / In vivo transcriptional pausing and cap formation on three Drosophila heat shock genes by Rasmussen (1993)10.1016/j.molcel.2004.11.028
/ Mol. Cell. / Efficient release from promoter-proximal stall sites requires transcript cleavage factor TFIIS by Adelman (2005)10.1126/science.1065329
/ Science / An extensive class of small RNAs in Caenorhabditis elegans complementarity to lin-14 by Lee (2001)10.1126/science.1064921
/ Science / Identification of novel genes coding for small expressed RNAs by Lagos-Quintana (2001)10.1126/science.1065062
/ Science / An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans by Lau (2001)10.1038/nature05701
/ Nature / Backtracking determines the force sensitivity of RNAP II in a factor-dependent manner by Galburt (2007){'year': '1973', 'series-title': 'Tables of Laplace Transforms', 'author': 'Oberhettinger', 'key': '10.1529/biophysj.107.105767_bib58'}
/ Tables of Laplace Transforms by Oberhettinger (1973)10.1021/j100540a008
/ J. Phys. Chem. / Exact stochastic simulation of coupled chemical reactions by Gillespie (1977){'year': '1986', 'series-title': 'Monte Carlo Methods in Statistical Physics', 'author': 'Binder', 'key': '10.1529/biophysj.107.105767_bib60'}
/ Monte Carlo Methods in Statistical Physics by Binder (1986)10.1016/S0021-9258(19)69683-3
/ J. Biol. Chem. / A direct effect of guanosine tetraphosphate on pausing of Escherichia coli RNA polymerase during RNA chain elongation by Kingston (1981)10.1126/science.270.5242.1653
/ Science / Transcription against an applied force by Yin (1995)10.1038/352444a0
/ Nature / Transcription by single molecules of RNA polymerase observed by light microscopy by Schafer (1991)
Dates
Type | When |
---|---|
Created | 18 years ago (Aug. 24, 2007, 8:40 p.m.) |
Deposited | 1 year ago (Aug. 12, 2024, 6:26 a.m.) |
Indexed | 4 months ago (April 30, 2025, 3:30 a.m.) |
Issued | 17 years, 8 months ago (Jan. 1, 2008) |
Published | 17 years, 8 months ago (Jan. 1, 2008) |
Published Print | 17 years, 8 months ago (Jan. 1, 2008) |
Funders
4
Royal Society
10.13039/501100000288
Region: Europe
pri (Associations and societies (private and public))
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1
- The Royal Society
University of Leeds
10.13039/501100000777
Medical Research Council
10.13039/501100000265
Region: Europe
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- Medical Research Council (United Kingdom)
- UK Medical Research Council
- MRC
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- G0300556
Engineering and Physical Sciences Research Council
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- UKRI Engineering and Physical Sciences Research Council
- Engineering and Physical Sciences Research Council - UKRI
- Engineering & Physical Sciences Research Council
- EPSRC
Awards
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- EP/C011953/1
- EP/D003105
@article{Voliotis_2008, title={Fluctuations, Pauses, and Backtracking in DNA Transcription}, volume={94}, ISSN={0006-3495}, url={http://dx.doi.org/10.1529/biophysj.107.105767}, DOI={10.1529/biophysj.107.105767}, number={2}, journal={Biophysical Journal}, publisher={Elsevier BV}, author={Voliotis, Margaritis and Cohen, Netta and Molina-París, Carmen and Liverpool, Tanniemola B.}, year={2008}, month=jan, pages={334–348} }