DOI: 10.1371/journal.pone.0051477. Insights into Factorless Translational Initiation by the tRNA-Like Pseudoknot Domain of a Viral IRES

Insights into Factorless Translational Initiation by the tRNA-Like Pseudoknot Domain of a Viral IRES

10.1371/journal.pone.0051477

Crossref journal-article

Public Library of Science (PLoS)

PLoS ONE (340)

Bibliography

Au, H. H. T., & Jan, E. (2012). Insights into Factorless Translational Initiation by the tRNA-Like Pseudoknot Domain of a Viral IRES. PLoS ONE, 7(12), e51477.

Authors 2

Hilda H. T. Au (first)
Eric Jan (additional)

References 37 Referenced 10

Pestova TV, Lorsch JR, Hellen CU (2007) The Mechanism of Translation Initiation in Eukaryotes. In: Mathews MB, Sonenberg N, Hershey J, editors. Translational Control in Biology and Medicine. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press. 87.
10.1101/gad.891101 / Genes Dev / Internal ribosome entry sites in eukaryotic mRNA molecules by CU Hellen (2001)
Doudna JA, Sarnow P (2007) Translation Initiation by Viral Internal Ribosome Entry Sites. In: Mathews MB, Sonenberg N, Hershey J, editors. Translation Control in Biology and Medicine. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press. 129.
10.1016/j.tibs.2008.04.007 / Trends Biochem Sci / Viral IRES RNA structures and ribosome interactions by JS Kieft (2008)
10.1101/gad.12.1.67 / Genes Dev / A prokaryotic-like mode of cytoplasmic eukaryotic ribosome binding to the initiation codon during internal translation initiation of hepatitis C and classical swine fever virus RNAs by TV Pestova (1998)
10.1261/rna.2197210 / RNA / The HCV IRES pseudoknot positions the initiation codon on the 40S ribosomal subunit by KE Berry (2010)
10.1016/j.str.2011.08.002 / Structure / Crystal structure of the HCV IRES central domain reveals strategy for start-codon positioning by KE Berry (2011)
10.1073/pnas.010426997 / Proc Natl Acad Sci U S A / Methionine-independent initiation of translation in the capsid protein of an insect RNA virus by J Sasaki (2000)
10.1128/JVI.73.2.1219-1226.1999 / J Virol / Translation initiation at the CUU codon is mediated by the internal ribosome entry site of an insect picorna-like virus in vitro by J Sasaki (1999)
10.1016/S0022-2836(02)01099-9 / J Mol Biol / Factorless ribosome assembly on the internal ribosome entry site of cricket paralysis virus by E Jan (2002)
10.1016/S0092-8674(00)00055-6 / Cell / Initiation of protein synthesis from the A site of the ribosome by JE Wilson (2000)
10.1101/gad.1040803 / Genes Dev / Translation elongation after assembly of ribosomes on the Cricket paralysis virus internal ribosomal entry site without initiation factors or initiator tRNA by TV Pestova (2003)
10.1073/pnas.2535183100 / Proc Natl Acad Sci U S A / Divergent tRNA-like element supports initiation, elongation, and termination of protein biosynthesis by E Jan (2003)
10.1074/jbc.M610887200 / J Biol Chem / Binding mode of the first aminoacyl-tRNA in translation initiation mediated by Plautia stali intestine virus internal ribosome entry site by H Yamamoto (2007)
10.1016/j.virusres.2008.06.006 / Virus Res / Functional analysis of structural motifs in dicistroviruses by N Nakashima (2008)
10.1016/j.virusres.2005.10.011 / Virus Res / Divergent IRES elements in invertebrates by E Jan (2006)
10.1093/nar/gkg336 / Nucleic Acids Res / Structural elements in the internal ribosome entry site of Plautia stali intestine virus responsible for binding with ribosomes by T Nishiyama (2003)
10.1261/rna.7184705 / RNA / A preformed compact ribosome-binding domain in the cricket paralysis-like virus IRES RNAs by D Costantino (2005)
10.1038/nsmb1177 / Nat Struct Mol Biol / Structure of the ribosome-bound cricket paralysis virus IRES RNA by M Schuler (2006)
10.1126/science.1133281 / Science / Structural Basis for Ribosome Recruitment and Manipulation by a Viral IRES RNA by JS Pfingsten (2006)
10.1016/j.jmb.2009.10.047 / J Mol Biol / Mechanistic Role of Structurally Dynamic Regions in Dicistroviridae IGR IRES by JS Pfingsten (2010)
10.1093/nar/gkl1121 / Nucleic Acids Res / Eukaryotic ribosomal protein RPS25 interacts with the conserved loop region in a dicistroviral intergenic internal ribosome entry site by T Nishiyama (2007)
10.1101/gad.1832209 / Genes Dev / RPS25 is essential for translation initiation by the Dicistroviridae and hepatitis C viral IRESs by DM Landry (2009)
10.1016/j.jmb.2009.01.042 / J Mol Biol / Conserved element of the dicistrovirus IGR IRES that mimics an E-site tRNA/ribosome interaction mediates multiple functions by CJ Jang (2009)
10.1038/nsmb1351 / Nat Struct Mol Biol / tRNA-mRNA mimicry drives translation initiation from a viral IRES by DA Costantino (2008)
10.1016/j.jmb.2007.04.076 / J Mol Biol / Conservation and diversity among the three-dimensional folds of the Dicistroviridae intergenic region IRESes by JS Pfingsten (2007)
10.1016/0378-1119(86)90362-8 / Gene / Nucleotide sequence and transcription of a human tRNA gene cluster with four genes by YN Chang (1986)
10.1073/pnas.1018582108 / Proc Natl Acad Sci U S A / Crystal structures of complexes containing domains from two viral internal ribosome entry site (IRES) RNAs bound to the 70S ribosome by J Zhu (2011)
10.1093/nar/gkr427 / Nucleic Acids Res / In vivo functional analysis of the Dicistroviridae intergenic region internal ribosome entry sites by MI Hertz (2011)
10.1016/0076-6879(74)30031-6 / Methods Enzymol / The elongation steps in protein synthesis by eukaryotic ribosomes: effects of antibiotics by L Carrasco (1974)
10.1016/0005-2787(70)90580-0 / Biochim Biophys Acta / Effect of edeine on aminoacyl-tRNA binding to ribosomes and its relationship to ribosomal binding sites by W Szer (1970)
10.1128/MCB.20.14.4990-4999.2000 / Mol Cell Biol / Naturally occurring dicistronic cricket paralysis virus RNA is regulated by two internal ribosome entry sites by JE Wilson (2000)
10.1017/S1355838201001741 / Rna / A tertiary structure model of the internal ribosome entry site (IRES) for methionine-independent initiation of translation by Y Kanamori (2001)
10.1073/pnas.1111303109 / Proc Natl Acad Sci U S A / Alternative reading frame selection mediated by a tRNA-like domain of an internal ribosome entry site by Q Ren (2012)
10.1261/rna.2044610 / RNA / Modular domains of the Dicistroviridae intergenic internal ribosome entry site by CJ Jang (2010)
10.1016/j.virusres.2008.06.010 / Virus Res / Role of tRNA-like structures in controlling plant virus replication by TW Dreher (2009)
10.1016/j.virol.2003.10.023 / Virology / The tRNA-like structure of Turnip yellow mosaic virus RNA is a 3'-translational enhancer by D Matsuda (2004)

Dates

Type	When
Created	12 years, 8 months ago (Dec. 7, 2012, 11:10 p.m.)
Deposited	5 years, 1 month ago (July 18, 2020, 4:55 a.m.)
Indexed	2 months, 2 weeks ago (June 10, 2025, 5:31 a.m.)
Issued	12 years, 8 months ago (Dec. 7, 2012)
Published	12 years, 8 months ago (Dec. 7, 2012)
Published Online	12 years, 8 months ago (Dec. 7, 2012)

Funders 0

None

BibTeX

@article{Au_2012, title={Insights into Factorless Translational Initiation by the tRNA-Like Pseudoknot Domain of a Viral IRES}, volume={7}, ISSN={1932-6203}, url={http://dx.doi.org/10.1371/journal.pone.0051477}, DOI={10.1371/journal.pone.0051477}, number={12}, journal={PLoS ONE}, publisher={Public Library of Science (PLoS)}, author={Au, Hilda H. T. and Jan, Eric}, editor={Jang, Sung Key}, year={2012}, month=dec, pages={e51477} }

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      "URL": "https://dx.plos.org/10.1371/journal.pone.0051477"
    }
  },
  "subtitle": [],
  "editor": [
    {
      "given": "Sung Key",
      "family": "Jang",
      "sequence": "first",
      "affiliation": []
    }
  ],
  "short-title": [],
  "issued": {
    "date-parts": [
      [
        2012,
        12,
        7
      ]
    ]
  },
  "references-count": 37,
  "journal-issue": {
    "issue": "12",
    "published-online": {
      "date-parts": [
        [
          2012,
          12,
          7
        ]
      ]
    }
  },
  "URL": "http://dx.doi.org/10.1371/journal.pone.0051477",
  "relation": {},
  "ISSN": [
    "1932-6203"
  ],
  "subject": [],
  "container-title-short": "PLoS ONE",
  "published": {
    "date-parts": [
      [
        2012,
        12,
        7
      ]
    ]
  }
}