Bibliography
Mudge, J., Miller, N. A., Khrebtukova, I., Lindquist, I. E., May, G. D., Huntley, J. J., Luo, S., Zhang, L., van Velkinburgh, J. C., Farmer, A. D., Lewis, S., Beavis, W. D., Schilkey, F. D., Virk, S. M., Black, C. F., Myers, M. K., Mader, L. C., Langley, R. J., Utsey, J. P., ⦠Kingsmore, S. F. (2008). Genomic Convergence Analysis of Schizophrenia: mRNA Sequencing Reveals Altered Synaptic Vesicular Transport in Post-Mortem Cerebellum. PLoS ONE, 3(11), e3625.
Authors
31
- Joann Mudge (first)
- Neil A. Miller (additional)
- Irina Khrebtukova (additional)
- Ingrid E. Lindquist (additional)
- Gregory D. May (additional)
- Jim J. Huntley (additional)
- Shujun Luo (additional)
- Lu Zhang (additional)
- Jennifer C. van Velkinburgh (additional)
- Andrew D. Farmer (additional)
- Sharon Lewis (additional)
- William D. Beavis (additional)
- Faye D. Schilkey (additional)
- Selene M. Virk (additional)
- C. Forrest Black (additional)
- M. Kathy Myers (additional)
- Lar C. Mader (additional)
- Ray J. Langley (additional)
- John P. Utsey (additional)
- Ryan W. Kim (additional)
- Rosalinda C. Roberts (additional)
- Sat Kirpal Khalsa (additional)
- Meredith Garcia (additional)
- Victoria Ambriz-Griffith (additional)
- Richard Harlan (additional)
- Wendy Czika (additional)
- Stanton Martin (additional)
- Russell D. Wolfinger (additional)
- Nora I. Perrone-Bizzozero (additional)
- Gary P. Schroth (additional)
- Stephen F. Kingsmore (additional)
References
83
Referenced
101
10.1016/S0006-3223(99)00263-2
/ Biol Psychiatry / Neuropsychologic functioning among the nonpsychotic relatives of schizophrenic patients: the effect of genetic loading. by SV Faraone (2000){'key': 'ref2', 'author': 'P McGuffin', 'year': '1994'}
by P McGuffin (1994)10.1007/s004060070005
/ Eur Arch Psychiatry Clin Neurosci / The genetic epidemiology of schizophrenia and of schizophrenia spectrum disorders. by D Lichtermann (2000)10.1016/j.neuron.2006.09.015
/ Neuron / Neurobiology of schizophrenia. by CA Ross (2006)10.1371/journal.pmed.0020141
/ PLoS Med / A systematic review of the prevalence of schizophrenia. by S Saha (2005)10.1002/(SICI)1096-9861(19990614)408:4<560::AID-CNE9>3.0.CO;2-P
/ J Comp Neurol / Stereological estimation of the total number of neurons in the murine hippocampus using the optical disector. by I Abusaad (1999)10.1038/sj.mp.4001558
/ Mol Psychiatry / Schizophrenia genes, gene expression, and neuropathology: on the matter of their convergence. by PJ Harrison (2005)10.1038/sj.ejhg.5201571
/ Eur J Hum Genet / Molecular genetic studies of schizophrenia. by B Riley (2006){'key': 'ref9', 'article-title': 'Diagnostic and statistical manual of mental disorders', 'year': '1994'}
/ Diagnostic and statistical manual of mental disorders (1994)10.1016/S0140-6736(03)12520-2
/ Lancet / Population stratification and spurious allelic association. by LR Cardon (2003)10.1046/j.1529-8817.2004.00122.x
/ Ann Hum Genet / Replication in genetic studies of complex traits. by MJ Sillanpaa (2004)10.1176/appi.ajp.157.7.1041
/ Am J Psychiatry / Toward reformulating the diagnosis of schizophrenia. by MT Tsuang (2000)10.1086/376549
/ Am J Hum Genet / Genome scan meta-analysis of schizophrenia and bipolar disorder, part II: Schizophrenia. by CM Lewis (2003)10.1111/j.1469-7610.2005.01557.x
/ J Child Psychol Psychiatry / Gene-environment interplay and psychopathology: multiple varieties but real effects. by M Rutter (2006)10.1016/j.schres.2006.05.023
/ Schizophr Res / Schizophrenia susceptibility genes converge on interlinked pathways related to glutamatergic transmission and long-term potentiation, oxidative stress and oligodendrocyte viability. by CJ Carter (2006)10.1098/rspb.2007.0876
/ Proc Biol Sci / Adaptive evolution of genes underlying schizophrenia. by B Crespi (2007)10.1172/JCI24759
/ J Clin Invest / Finding schizophrenia genes. by G Kirov (2005)10.1016/j.tig.2005.06.011
/ Trends Genet / Schizophrenia: genes at last? by MJ Owen (2005)10.1176/ajp.152.5.749
/ Am J Psychiatry / Evaluating the spectrum concept of schizophrenia in the Roscommon Family Study. by KS Kendler (1995)10.1176/appi.ajp.160.4.636
/ Am J Psychiatry / The endophenotype concept in psychiatry: etymology and strategic intentions. by Gottesman II (2003)10.1073/pnas.0507666102
/ Proc Natl Acad Sci U S A / Comparative gene expression analysis of blood and brain provides concurrent validation of SELENBP1 up-regulation in schizophrenia. by SJ Glatt (2005)10.1186/1471-2350-9-39
/ BMC Med Genet / The estrogen hypothesis of schizophrenia implicates glucose metabolism: association study in three independent samples. by L Olsen (2008)10.6026/97320630001436
/ Bioinformation / False discovery rate paradigms for statistical analyses of microarray gene expression data. by C Cheng (2007)10.1093/hmg/ddg070
/ Hum Mol Genet / Genomic convergence: identifying candidate genes for Parkinson's disease by combining serial analysis of gene expression and genetic linkage. by MA Hauser (2003)10.1093/hmg/ddg357
/ Hum Mol Genet / Glutathione S-transferase omega-1 modifies age-at-onset of Alzheimer disease and Parkinson disease. by YJ Li (2003)10.1002/mds.20573
/ Mov Disord / Genomic convergence to identify candidate genes for Parkinson disease: SAGE analysis of the substantia nigra. by MA Noureddine (2005)10.1086/432588
/ Am J Hum Genet / Identification of risk and age-at-onset genes on chromosome 1p in Parkinson disease. by SA Oliveira (2005)10.1002/ajmg.b.30481
/ Am J Med Genet B Neuropsychiatr Genet / Towards understanding the schizophrenia code: an expanded convergent functional genomics approach. by H Le-Niculescu (2007)10.31887/DCNS.2006.8.3/blipska
/ Dialogues Clin Neurosci / Functional genomics in postmortem human brain: abnormalities in a DISC1 molecular pathway in schizophrenia. by BK Lipska (2006)10.1002/ajmg.b.30171
/ Am J Med Genet B Neuropsychiatr Genet / Gene expression analysis of peripheral blood leukocytes from discordant sib-pairs with schizophrenia and bipolar disorder reveals points of convergence between genetic and functional genomic approaches. by FA Middleton (2005)10.1186/1471-2164-7-246
/ BMC Genomics / Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach. by MN Bainbridge (2006)10.1126/science.1137325
/ Science / Polony multiplex analysis of gene expression (PMAGE) in mouse hypertrophic cardiomyopathy. by JB Kim (2007)10.1021/bp0343054
/ Biotechnol Prog / Detecting changes in the relative expression of KRAS2 splice variants using polymerase colonies. by JA Butz (2004)10.1186/1471-2156-5-3
/ BMC Genet / Detection of allelic variations of human gene expression by polymerase colonies. by JA Butz (2004)10.1186/1471-2164-7-272
/ BMC Genomics / Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology. by F Cheung (2006)10.1186/1471-2407-7-109
/ BMC Cancer / Pathway aberrations of murine melanoma cells observed in Paired-End diTag transcriptomes. by KP Chiu (2007)10.1101/gr.5145806
/ Genome Res / Gene discovery and annotation using LCM-454 transcriptome sequencing. by SJ Emrich (2007){'key': 'ref38', 'first-page': '1848', 'article-title': 'Genome-wide expression profiling of the Arabidopsis female gametophyte identifies families of small, secreted proteins.', 'volume': '3', 'author': 'MW Jones-Rhoades', 'year': '2007', 'journal-title': 'PLoS Genet'}
/ PLoS Genet / Genome-wide expression profiling of the Arabidopsis female gametophyte identifies families of small, secreted proteins. by MW Jones-Rhoades (2007)10.1016/j.cell.2008.03.029
/ Cell / Highly integrated single-base resolution maps of the epigenome in Arabidopsis. by R Lister (2008){'key': 'ref40', 'article-title': 'RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays.', 'author': 'J Marioni', 'year': '2008', 'journal-title': 'Genome Res'}
/ Genome Res / RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays. by J Marioni (2008)10.1002/bit.20048
/ Biotechnol Bioeng / Digital quantitative measurements of gene expression. by V Mikkilineni (2004)10.1101/gr.7179508
/ Genome Res / Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. by RD Morin (2008)10.1038/nmeth.1226
/ Nat Methods / Mapping and quantifying mammalian transcriptomes by RNA-Seq. by A Mortazavi (2008)10.1126/science.1158441
/ Science / The transcriptional landscape of the yeast genome defined by RNA sequencing. by U Nagalakshmi (2008)10.1093/nar/gkl444
/ Nucleic Acids Res / Multiplex sequencing of paired-end ditags (MS-PET): a strategy for the ultra-high-throughput analysis of transcriptomes and genomes. by P Ng (2006)10.1093/nar/gkl714
/ Nucleic Acids Res / DeepSAGE–digital transcriptomics with high sensitivity, simple experimental protocol and multiplexing of samples. by KL Nielsen (2006)10.1111/j.1365-313X.2007.03244.x
/ Plant J / Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.). by K Ohtsu (2007)10.1073/pnas.0712399105
/ Proc Natl Acad Sci U S A / Transcriptome sequencing of malignant pleural mesothelioma tumors. by DJ Sugarbaker (2008)10.1126/science.1146647
/ Science / Wasp gene expression supports an evolutionary link between maternal behavior and eusociality. by AL Toth (2007)10.1104/pp.107.096677
/ Plant Physiol / Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. by AP Weber (2007)10.1176/ajp.2006.163.10.1829
/ Am J Psychiatry / Increased expression of activity-dependent genes in cerebellar glutamatergic neurons of patients with schizophrenia. by RD Paz (2006){'key': 'ref52', 'article-title': 'Altered expression of genes involved in GABAergic transmission and neuromodulation of granule cell activity in the cerebellum of patients with schizophrenia.', 'author': 'WM Bullock', 'year': '2008', 'journal-title': 'Am J Psychiatry In press'}
/ Am J Psychiatry In press / Altered expression of genes involved in GABAergic transmission and neuromodulation of granule cell activity in the cerebellum of patients with schizophrenia. by WM Bullock (2008)10.1038/ng1433
/ Nat Genet / The use of pedigree, sib-pair and association studies of common diseases for genetic mapping and epidemiology. by N Freimer (2004)10.1192/bjp.bp.106.025585
/ Br J Psychiatry / Schizophrenia: a common disease caused by multiple rare alleles. by JM McClellan (2007)10.1093/bioinformatics/bti310
/ Bioinformatics / GMAP: a genomic mapping and alignment program for mRNA and EST sequences. by TD Wu (2005)10.1038/nature05874
/ Nature / Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. by E Birney (2007)10.1038/nature07509
/ Alternative Isoform Regulation in Human Tissue Transcriptomes. by ET Wang (2008)10.1093/schbul/sbn034
/ Schizophr Bull / Theory of mind and schizophrenia: a positron emission tomography study of medication-free patients. by NC Andreasen (2008)10.1016/j.biopsych.2008.01.003
/ Biol Psychiatry / The role of the cerebellum in schizophrenia. by NC Andreasen (2008)10.1016/j.pscychresns.2005.02.011
/ Psychiatry Res / Reduced cerebellar volume and neurological soft signs in first-episode schizophrenia. by C Bottmer (2005)10.1016/j.pscychresns.2007.06.001
/ Psychiatry Res / Cerebellum volume and eyeblink conditioning in schizophrenia. by CR Edwards (2008)10.1016/j.biopsych.2004.02.020
/ Biol Psychiatry / Cerebellar dysfunction in neuroleptic naive schizophrenia patients: clinical, cognitive, and neuroanatomic correlates of cerebellar neurologic signs. by BC Ho (2004)10.1016/j.biopsych.2004.09.013
/ Biol Psychiatry / Resting neural activity distinguishes subgroups of schizophrenia patients. by D Malaspina (2004)10.1159/000122268
/ Neuropsychobiology / Cerebellar posterior superior vermis and cognitive cluster scores in drug-naive patients with first-episode schizophrenia. by G Okugawa (2007)10.1176/appi.ajp.159.2.227
/ Am J Psychiatry / A PET study of the pathophysiology of negative symptoms in schizophrenia. Positron emission tomography. by SG Potkin (2002)10.1186/1471-244X-8-S1-S6
/ BMC Psychiatry / Regional grey matter volumetric changes in forensic schizophrenia patients: an MRI study comparing the brain structure of patients who have seriously and violently offended with that of patients who have not. by BK Puri (2008)10.1038/nature02442
/ Nature / Integration of quanta in cerebellar granule cells during sensory processing. by P Chadderton (2004)10.1126/science.1138341
/ Science / RNA maps reveal new RNA classes and a possible function for pervasive transcription. by P Kapranov (2007)10.2144/000112802
/ Biotechniques / Deep cap analysis gene expression (CAGE): genome-wide identification of promoters, quantification of their expression, and network inference. by M de Hoon (2008)10.1186/1471-2164-9-91
/ BMC Genomics / Effect of RNA quality on transcript intensity levels in microarray analysis of human post-mortem brain tissues. by T Popova (2008)10.1186/1471-2105-8-412
/ BMC Bioinformatics / Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data. by JJ Chen (2007)10.1038/nbt1236
/ Nat Biotechnol / Evaluation of DNA microarray results with quantitative gene expression platforms. by RD Canales (2006)10.1016/S0969-9961(03)00126-8
/ Neurobiol Dis / DNA microarray analysis of functionally discrete human brain regions reveals divergent transcriptional profiles. by SJ Evans (2003)10.1038/ng.171
/ Nat Genet / Systematic meta-analyses and field synopsis of genetic association studies in schizophrenia: the SzGene database. by NC Allen (2008)10.1016/S0896-6273(00)00085-4
/ Neuron / Molecular characterization of schizophrenia viewed by microarray analysis of gene expression in prefrontal cortex. by K Mirnics (2000)10.1016/S0278-5846(03)00027-7
/ Prog Neuropsychopharmacol Biol Psychiatry / SNAP-25 reduction in the hippocampus of patients with schizophrenia. by PM Thompson (2003)10.1016/S0920-9964(01)00377-2
/ Schizophr Res / Microarray analysis of gene expression in the prefrontal cortex in schizophrenia: a preliminary study. by MP Vawter (2002)10.1038/sj.mp.4001158
/ Mol Psychiatry / Reduction of synapsin in the hippocampus of patients with bipolar disorder and schizophrenia. by MP Vawter (2002)10.1091/mbc.E06-09-0831
/ Mol Biol Cell / A novel AAK1 splice variant functions at multiple steps of the endocytic pathway. by DM Henderson (2007)10.1038/ncb1290
/ Nat Cell Biol / A GTPase-activating protein controls Rab5 function in endocytic trafficking. by AK Haas (2005)10.1093/nar/gki025
/ Nucleic Acids Res / NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. by KD Pruitt (2005){'key': 'ref82', 'article-title': 'UniGene: a unified view of the transcriptome. The NCBI Handbook', 'author': 'JU Pontius', 'year': '2003'}
/ UniGene: a unified view of the transcriptome. The NCBI Handbook by JU Pontius (2003)10.1073/pnas.012025199
/ Proc Natl Acad Sci U S A / Large-scale analysis of the human and mouse transcriptomes. by AI Su (2002)
Dates
Type | When |
---|---|
Created | 16 years, 9 months ago (Nov. 4, 2008, 8:50 p.m.) |
Deposited | 3 years, 11 months ago (Sept. 19, 2021, 6:57 p.m.) |
Indexed | 3 months ago (May 28, 2025, 6:06 a.m.) |
Issued | 16 years, 9 months ago (Nov. 5, 2008) |
Published | 16 years, 9 months ago (Nov. 5, 2008) |
Published Online | 16 years, 9 months ago (Nov. 5, 2008) |
@article{Mudge_2008, title={Genomic Convergence Analysis of Schizophrenia: mRNA Sequencing Reveals Altered Synaptic Vesicular Transport in Post-Mortem Cerebellum}, volume={3}, ISSN={1932-6203}, url={http://dx.doi.org/10.1371/journal.pone.0003625}, DOI={10.1371/journal.pone.0003625}, number={11}, journal={PLoS ONE}, publisher={Public Library of Science (PLoS)}, author={Mudge, Joann and Miller, Neil A. and Khrebtukova, Irina and Lindquist, Ingrid E. and May, Gregory D. and Huntley, Jim J. and Luo, Shujun and Zhang, Lu and van Velkinburgh, Jennifer C. and Farmer, Andrew D. and Lewis, Sharon and Beavis, William D. and Schilkey, Faye D. and Virk, Selene M. and Black, C. Forrest and Myers, M. Kathy and Mader, Lar C. and Langley, Ray J. and Utsey, John P. and Kim, Ryan W. and Roberts, Rosalinda C. and Khalsa, Sat Kirpal and Garcia, Meredith and Ambriz-Griffith, Victoria and Harlan, Richard and Czika, Wendy and Martin, Stanton and Wolfinger, Russell D. and Perrone-Bizzozero, Nora I. and Schroth, Gary P. and Kingsmore, Stephen F.}, editor={Aramayo, Rodolfo}, year={2008}, month=nov, pages={e3625} }