Crossref
journal-article
Public Library of Science (PLoS)
PLoS Genetics (340)
References
60
Referenced
55
10.1146/annurev.biochem.72.121801.161720
/ Annu Rev Biochem / Mechanisms of alternative pre-messenger RNA splicing. (2003)10.1016/S0168-9525(00)02176-4
/ Trends Genet / Alternative splicing: increasing diversity in the proteomic world. (2001)10.1016/0168-9525(96)10037-8
/ Trends Genet / Directing alternative splicing: cast and scenarios. (1996)10.1093/nar/gkl924
/ Nucleic Acids Res / Different levels of alternative splicing among eukaryotes. (2007)-
SugnetCWKentWJAresMJrHausslerD 2004 Transcriptome and genome conservation of alternative splicing events in humans and mice. Pac Symp Biocomput 66 77
(
10.1142/9789812704856_0007
) 10.1038/nrg1451
/ Nat Rev Genet / How did alternative splicing evolve? (2004)10.1038/sj.emboj.7601023
/ EMBO J / The expanding transcriptome: the genome as the ‘Book of Sand'. (2006)10.1038/ng1159
/ Nat Genet / Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss. (2003)10.1101/gr.3929705
/ Genome Res / Origin and evolution of new exons in rodents. (2005)10.1016/j.tig.2004.12.004
/ Trends Genet / Alternative splicing of conserved exons is frequently species-specific in human and mouse. (2005)10.1073/pnas.0409742102
/ Proc Natl Acad Sci U S A / Identification and analysis of alternative splicing events conserved in human and mouse. (2005)10.1038/271501a0
/ Nature / Why genes in pieces? (1978)10.1016/S0168-9525(02)00029-X
/ Trends Genet / Evolution of alternative splicing: deletions, insertions and origin of functional parts of proteins from intron sequences. (2003)10.1093/hmg/11.13.1561
/ Hum Mol Genet / Common exon duplication in animals and its role in alternative splicing. (2002)10.1101/gr.229302
/ Genome Res / Alu-containing exons are alternatively spliced. (2002)10.1016/0168-9525(94)90254-2
/ Trends Genet / Alu sequences in the coding regions of mRNA: a source of protein variability. (1994)10.1016/j.jmb.2004.06.070
/ J Mol Biol / From “junk” to gene: curriculum vitae of a primate receptor isoform gene. (2004)10.1073/pnas.0603042103
/ Proc Natl Acad Sci U S A / Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons. (2006)10.1186/gb-2007-8-6-r127
/ Genome Biol / Comparative analysis of transposed elements' insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome. (2007){'key': 'pgen-0030203-b020', 'article-title': 'The emergence of alternative 3′ and 5′ splice site exons from constitutive exons.', 'volume': '3', 'year': '2007', 'journal-title': 'PLoS Comput Biol'}
/ PLoS Comput Biol / The emergence of alternative 3′ and 5′ splice site exons from constitutive exons. (2007)10.1261/rna.5196404
/ RNA / Comparative analysis detects dependencies among the 5′ splice-site positions. (2004)10.1016/j.tig.2003.12.004
/ Trends Genet / How prevalent is functional alternative splicing in the human genome? (2004)10.1101/gr.2572604
/ Genome Res / A non-EST-based method for exon-skipping prediction. (2004)10.1038/nrg1896
/ Nat Rev Genet / Alternative splicing and RNA selection pressure–evolutionary consequences for eukaryotic genomes. (2006)10.1261/rna.2660805
/ RNA / Characteristics and regulatory elements defining constitutive splicing and different modes of alternative splicing in human and mouse. (2005)10.1101/gr.200901
/ Genome Res / The K(A)/K(S) ratio test for assessing the protein-coding potential of genomic regions: an empirical and simulation study. (2002)10.1093/bioinformatics/bti613
/ Bioinformatics / Assessing the application of Ka/Ks ratio test to alternatively spliced exons. (2005)10.1101/gr.1208803
/ Genome Res / Intronic sequences flanking alternatively spliced exons are conserved between human and mouse. (2003)10.1016/j.molcel.2006.05.008
/ Mol Cell / Comparative analysis identifies exonic splicing regulatory sequences–The complex definition of enhancers and silencers. (2006)10.1093/nar/gkh197
/ Nucleic Acids Res / Exon repetition: a major pathway for processing mRNA of some genes is allele-specific. (2004)10.1038/nature01262
/ Nature / Initial sequencing and comparative analysis of the mouse genome. (2002)10.1093/nar/15.17.7155
/ Nucleic Acids Res / RNA splice junctions of different classes of eukaryotes: sequence statistics and functional implications in gene expression. (1987)10.1186/1471-2148-6-50
/ BMC Evol Biol / Differentiated evolutionary rates in alternative exons and the implications for splicing regulation. (2006)10.1093/nar/gki198
/ Nucleic Acids Res / MAFFT version 5: improvement in accuracy of multiple sequence alignment. (2005)10.1093/nar/gkg616
/ Nucleic Acids Res / ESEfinder: a web resource to identify exonic splicing enhancers. (2003)10.1101/gad.1314205
/ Genes Dev / Global analysis of positive and negative pre-mRNA splicing regulators in Drosophila. (2005)10.1073/pnas.0404901101
/ Proc Natl Acad Sci U S A / Variation in sequence and organization of splicing regulatory elements in vertebrate genes. (2004)10.1074/jbc.M208418200
/ J Biol Chem / Transcriptional activators differ in their abilities to control alternative splicing. (2002)10.1073/pnas.201407298
/ Proc Natl Acad Sci U S A / A computational analysis of sequence features involved in recognition of short introns. (2001)10.1126/science.1073774
/ Science / Predictive identification of exonic splicing enhancers in human genes. (2002)10.1016/j.cell.2004.11.010
/ Cell / Systematic identification and analysis of exonic splicing silencers. (2004)10.1093/hmg/ddi164
/ Hum Mol Genet / Human-mouse comparative analysis reveals that branch-site plasticity contributes to splicing regulation. (2005)10.1101/gr.926603
/ Genome Res / LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA. (2003)10.1073/pnas.0603797103
/ Proc Natl Acad Sci U S A / Pegasoferae, an unexpected mammalian clade revealed by tracking ancient retroposon insertions. (2006)10.1073/pnas.89.22.10706
/ Proc Natl Acad Sci U S A / On “genomenclature”: a comprehensive (and respectful) taxonomy for pseudogenes and other “junk DNA”. (1992)10.1016/j.tig.2006.03.006
/ Trends Genet / Do transposable elements really contribute to proteomes? (2006)10.1074/jbc.M308036200
/ J Biol Chem / Smac3, a novel Smac/DIABLO splicing variant, attenuates the stability and apoptosis-inhibiting activity of X-linked inhibitor of apoptosis protein. (2003)10.1007/s11033-004-6939-9
/ Mol Biol Rep / Molecular cloning and characterization of AAAS-V2, a novel splice variant of human AAAS. (2005)10.1073/pnas.0508489102
/ Proc Natl Acad Sci U S A / The architecture of pre-mRNAs affects mechanisms of splice-site pairing. (2005)10.1016/S1097-2765(04)00181-9
/ Mol Cell / Minimal conditions for exonization of intronic sequences: 5′ splice site formation in alu exons. (2004)10.1517/14656566.6.4.561
/ Expert Opin Pharmacother / Familial dysautonomia: a review of the current pharmacological treatments. (2005)10.1101/gr.3936206
/ Genome Res / Systematic genome-wide annotation of spliceosomal proteins reveals differential gene family expansion. (2006)10.1016/S1097-2765(00)00107-6
/ Mol Cell / The apoptosis-promoting factor TIA-1 is a regulator of alternative pre-mRNA splicing. (2000){'key': 'pgen-0030203-b054', 'first-page': '555', 'article-title': 'PAML: a program package for phylogenetic analysis by maximum likelihood.', 'volume': '13', 'year': '1997', 'journal-title': 'Comput Appl Biosci'}
/ Comput Appl Biosci / PAML: a program package for phylogenetic analysis by maximum likelihood. (1997)10.1016/S0169-5347(00)01994-7
/ Trends Ecol Evol / Statistical methods for detecting molecular adaptation. (2000)10.1101/gr.229102
/ Genome Res / The human genome browser at UCSC. (2002)10.1002/dvdy.10152
/ Dev Dyn / Pineal-specific expression of green fluorescent protein under the control of the serotonin-N-acetyltransferase gene regulatory regions in transgenic zebrafish. (2002)10.1210/me.2003-0439
/ Mol Endocrinol / Zebrafish serotonin-N-acetyltransferase-2 gene regulation: pineal-restrictive downstream module contains a functional E-box and three photoreceptor conserved elements. (2004)10.1242/dev.127.17.3645
/ Development / The olfactory placodes of the zebrafish form by convergence of cellular fields at the edge of the neural plate. (2000)10.1126/science.1082588
/ Science / The birth of an alternatively spliced exon: 3′ splice-site selection in Alu exons. (2003)
Dates
Type | When |
---|---|
Created | 17 years, 9 months ago (Nov. 13, 2007, 12:03 p.m.) |
Deposited | 7 months, 2 weeks ago (Jan. 22, 2025, 2:53 a.m.) |
Indexed | 2 months, 3 weeks ago (June 12, 2025, 7:04 a.m.) |
Issued | 17 years, 9 months ago (Nov. 16, 2007) |
Published | 17 years, 9 months ago (Nov. 16, 2007) |
Published Online | 17 years, 9 months ago (Nov. 16, 2007) |
@article{Lev_Maor_2007, title={The “Alternative” Choice of Constitutive Exons throughout Evolution}, volume={3}, ISSN={1553-7404}, url={http://dx.doi.org/10.1371/journal.pgen.0030203}, DOI={10.1371/journal.pgen.0030203}, number={11}, journal={PLoS Genetics}, publisher={Public Library of Science (PLoS)}, author={Lev-Maor, Galit and Goren, Amir and Sela, Noa and Kim, Eddo and Keren, Hadas and Doron-Faigenboim, Adi and Leibman-Barak, Shelly and Pupko, Tal and Ast, Gil}, editor={Stubbs, Lisa}, year={2007}, month=nov, pages={e203} }