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journal-article
Public Library of Science (PLoS)
PLoS Computational Biology (340)
References
47
Referenced
29
10.1016/j.cell.2009.02.009
/ Cell / The spliceosome: Design principles of a dynamic RNP machine. by MC Wahl (2009)10.1146/annurev.genet.36.043002.091635
/ Annu Rev Genet / Allosteric cascade of spliceosome activation. by DA Brow (2002)10.1016/j.molcel.2008.04.013
/ Mol Cell / “nought may endure but mutability”: Spliceosome dynamics and the regulation of splicing. by DJ Smith (2008)10.1038/nsmb1240
/ Nat Struct Mol Biol / Opposing classes of prp8 alleles modulate the transition between the catalytic steps of pre-mRNA splicing. by L Liu (2008)10.1016/S1097-2765(04)00217-5
/ Mol Cell / Suppression of multiple substrate mutations by spliceosomal prp8 alleles suggests functional correlations with ribosomal ambiguity mutants. by CC Query (2004)10.1016/S0955-0674(03)00048-6
/ Curr Opin Cell Biol / Coupling transcription, splicing and mRNA export. by R Reed (2003)10.1261/rna.7100104
/ RNA / Multiple links between transcription and splicing. by AR Kornblihtt (2004)10.1038/nsmb1135
/ Nat Struct Mol Biol / Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells. by I Listerman (2006)10.1042/BST0381251
/ Biochem Soc Trans / Cross-talk in transcription, splicing and chromatin: who makes the first call? by R Alexander (2010)10.1016/j.molcel.2010.11.005
/ Mol Cell / Splicing-dependent RNA polymerase pausing in yeast. by RD Alexander (2010)10.1016/j.molcel.2010.11.004
/ Mol Cell / Global analysis of nascent RNA reveals transcriptional pausing in terminal exons. by F Carrillo Oesterreich (2010)10.1016/j.molcel.2010.10.012
/ Mol Cell / Crosstalk between mRNA 3′ end processing andtranscription initiation. by CK Mapendano (2010)10.1016/j.ceb.2005.04.004
/ Curr Opin Cell Biol / Dynamics of transcription and mRNA export. by X Darzacq (2005)10.1016/0092-8674(85)90066-2
/ Cell / mRNA splicing efficiency in yeast and the contribution of nonconserved sequences. by CW Pikielny (1985)10.1371/journal.pbio.0040147
/ PLoS Biol / Linking splicing to Pol II transcription stabilizes pre-mRNAs and inuences splicing patterns. by MJ Hicks (2006)10.1083/jcb.200706018
/ J Cell Biol / The transcriptional cycle of HIV-1 in real-time and live cells. by S Boireau (2007)10.1529/biophysj.107.105767
/ Biophys J / Fluctuations, pauses, and backtracking in DNA transcription. by M Voliotis (2008)10.1038/79583
/ Nat Struct Biol / The ends of the affair: capping and polyadenylation. by A Shatkin (2000)10.1083/jcb.200206019
/ J Cell Biol / The transcription cycle of RNA polymerase II in living cells. by H Kimura (2002)10.1126/science.1099754
/ Science / Dynamics of Single mRNPs in Nuclei of Living Cells. by Y Shav-Tal (2004)10.1038/nsmb1280
/ Nat Struct Mol Biol / In vivo dynamics of RNA polymerase II transcription. by X Darzacq (2007)10.1371/journal.pcbi.0030201
/ PLoS Comput Biol / A stochastic view of spliceosome assembly and recycling in the nucleus. by J Rino (2007)10.1261/rna.2162610
/ RNA / Ribosys, a high resolution, quantitative approach to measure the in vivo kinetics of pre-mRNA splicing and 3′ end processing in <italic>saccharomyces cerevisiae</italic>. by R Alexander (2010)10.1128/JVI.69.7.4423-4430.1995
/ J Virol / RNA footprint mapping of RNA polymerase II molecules stalled in the intergenic region of polyomavirus DNA. by F Brabant (1995)10.1126/science.1076164
/ Science / A kinetic framework for a mammalian RNA polymerase in vivo. by M Dundr (2002)10.1371/journal.pone.0008845
/ PLoS ONE / Processivity and coupling in messenger RNA transcription. by S Aitken (2010)10.1242/jcs.00073
/ J Cell Sci / On the importance of being co-transcriptional. by KM Neugebauer (2002)10.1016/j.molcel.2006.12.002
/ Mol Cell / A genome-wide analysis indicates that yeast pre-mRNA splicing is predominantly post-transcriptional. by DF Tardiff (2006)10.1073/pnas.93.11.5208
/ PNAS / Absolute mRNA levels and transcriptional initiation rates in Saccharomyces cerevisiae. by V Iyer (1996)10.1038/nsmb0207-103
/ Nat Struct Mol Biol / Transcriptional noise and the fidelity of initiation by RNA polymerase II. by K Struhl (2007)10.1016/S1097-2765(03)00488-X
/ Mol Cell / Cytoplasmic degradation of splice-defective pre-mRNAs and intermediates. by PJ Hilleren (2003)10.1016/S0960-9822(02)01353-2
/ Curr Biol / Polyadenylation: A tail of two complexes. by N Proudfoot (2002)10.1083/jcb.201009012
/ J Cell Biol / Real-time imaging of cotranscriptional splicing reveals a kinetic model that reduces noise: implications for alternative splicing regulation. by U Schmidt (2011)10.1016/j.copbio.2010.09.014
/ Curr Opin Biotech / Model-based inference of biochemical parameters and dynamic properties of microbial signal transduction networks. by J Schaber (2011)10.1093/bioinformatics/btl522
/ Bioinformatics / Parameter estimation using simulated annealing for s-system models of biochemical networks. by OR Gonzalez (2007)10.1142/S0219720005001132
/ J Bioinform Comput Biol / Dizzy: stochastic simulation of large-scale genetic regulatory networks. by S Ramsey (2005)10.1016/j.tcb.2009.05.004
/ Trends Cell Biol / The spliceosome: a self-organized macromolecular machine in the nucleus? by J Rino (2009)10.1017/S1355838299982286
/ RNA / Transient interaction of BBP/ScSF1 and Mud2 with the splicing machinery affects the kinetics of spliceosome assembly. by B Rutz (1999)10.1126/science.1144331
/ Science / Effects of molecular memory and bursting on uctuations in gene expression. by JM Pedraza (2008)10.1261/rna.1409209
/ RNA / Polyadenylation releases mRNA from RNA polymerase II in a process that is licensed by splicing. by F Rigo (2009)10.1128/MCB.13.10.6211
/ Mol Cell Biol / Order of intron removal during splicing of endogenous adenine phosphoribosyltransferase and dihydrofolate reductase pre-mRNA. by O Kessler (1993)10.1038/nsmb.1666
/ Nat Struct Mol Biol / Rates of in situ transcription and splicing in large human genes. by J Singh (2009)10.1128/MCB.22.19.6706-6718.2002
/ Mol Cell Biol / In vivo kinetics of mRNA splicing and transport in mammalian cells. by A Audibert (2002)10.1016/j.molcel.2009.09.018
/ Mol Cell / “Cotranscriptionality”: The transcription elongation complex as a nexus for nuclear transactions. by R Perales (2009)10.1016/j.cell.2010.11.056
/ Cell / Epigenetics in alternative pre-mRNA splicing. by RF Luco (2011)10.1109/TAC.1974.1100705
/ IEEE T Automat Contr / A new look at statistical model identification. by H Akaike (1974){'key': 'ref47', 'article-title': 'Model selection and multimodel inference', 'author': 'KP Burnham', 'year': '2002'}
/ Model selection and multimodel inference by KP Burnham (2002)
Dates
Type | When |
---|---|
Created | 13 years, 10 months ago (Oct. 13, 2011, 5:02 p.m.) |
Deposited | 5 years, 2 months ago (June 25, 2020, 7:57 p.m.) |
Indexed | 1 week, 5 days ago (Aug. 20, 2025, 9:06 a.m.) |
Issued | 13 years, 10 months ago (Oct. 13, 2011) |
Published | 13 years, 10 months ago (Oct. 13, 2011) |
Published Online | 13 years, 10 months ago (Oct. 13, 2011) |
@article{Aitken_2011, title={Modelling Reveals Kinetic Advantages of Co-Transcriptional Splicing}, volume={7}, ISSN={1553-7358}, url={http://dx.doi.org/10.1371/journal.pcbi.1002215}, DOI={10.1371/journal.pcbi.1002215}, number={10}, journal={PLoS Computational Biology}, publisher={Public Library of Science (PLoS)}, author={Aitken, Stuart and Alexander, Ross D. and Beggs, Jean D.}, editor={Guigo, Roderic}, year={2011}, month=oct, pages={e1002215} }