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References
71
Referenced
180
10.1038/nrm1589
/ Nat Rev Mol Cell Biol / Intrinsically unstructured proteins and their functions. by HJ Dyson (2005)10.1016/j.jmb.2006.04.016
/ J Mol Biol / Human transcription factors contain a high fraction of intrinsically disordered regions essential for transcriptional regulation. by Y Minezaki (2006)10.1110/ps.03128904
/ Protein Sci / Protein flexibility and intrinsic disorder. by P Radivojac (2004)10.1016/S0968-0004(02)02169-2
/ Trends Biochem Sci / Intrinsically unstructured proteins. by P Tompa (2002)10.1093/nar/gkh253
/ Nucleic Acids Res / The importance of intrinsic disorder for protein phosphorylation. by LM Iakoucheva (2004)10.1007/PL00000757
/ Cell Mol Life Sci / Regulation of transcription factor function by phosphorylation. by AJ Whitmarsh (2000)10.1007/PL00000760
/ Cell Mol Life Sci / Regulation of transcription factors by protein degradation. by JM Desterro (2000)10.1006/jmbi.1999.3110
/ J Mol Biol / Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm. by PE Wright (1999)10.1016/j.tcb.2005.07.007
/ Trends Cell Biol / CREB: the unindicted cancer co-conspirator. by MD Conkright (2005)10.1038/35085068
/ Nat Rev Mol Cell Biol / Transcriptional regulation by the phosphorylation-dependent factor CREB. by B Mayr (2001)10.1074/jbc.M207361200
/ J Biol Chem / Roles of phosphorylation and helix propensity in the binding of the KIX domain of CREB-binding protein by constitutive (c-Myb) and inducible (CREB) activators. by T Zor (2002)10.1016/S0092-8674(00)80463-8
/ Cell / Solution structure of the KIX domain of CBP bound to the transactivation domain of CREB: a model for activator:coactivator interactions. by I Radhakrishnan (1997)10.1016/S0014-5793(98)00680-2
/ FEBS Lett / Conformational preferences in the Ser133-phosphorylated and non-phosphorylated forms of the kinase inducible transactivation domain of CREB. by I Radhakrishnan (1998)10.1016/j.cellsig.2004.05.001
/ Cell Signal / What turns CREB on? by M Johannessen (2004)10.1021/bi026222m
/ Biochemistry / Structurally distinct modes of recognition of the KIX domain of CBP by Jun and CREB. by KM Campbell (2002)10.1038/323353a0
/ Nature / A cyclic AMP- and phorbol ester-inducible DNA element. by M Comb (1986)10.1073/pnas.83.18.6682
/ Proc Natl Acad Sci U S A / Identification of a cyclic-AMP-responsive element within the rat somatostatin gene. by MR Montminy (1986)10.1038/328175a0
/ Nature / Binding of a nuclear protein to the cyclic-AMP response element of the somatostatin gene. by MR Montminy (1987)10.1038/365855a0
/ Nature / Phosphorylated CREB binds specifically to the nuclear protein CBP. by JC Chrivia (1993)10.1007/s002490000112
/ Eur Biophys J / Ser133 phosphate-KIX interactions in the CREB-CBP complex: an ab initio molecular dynamics study. by PM Dal (2001)10.1038/10655
/ Nat Struct Biol / Electrostatic contribution of phosphorylation to the stability of the CREB-CBP activator-coactivator complex. by SP Mestas (1999)10.1002/prot.21032
/ Proteins / Phosphorylation-induced transient intrinsic structure in the kinase-inducible domain of CREB facilitates its recognition by the KIX domain of CBP. by I Solt (2006)10.1038/nature05858
/ Nature / Mechanism of coupled folding and binding of an intrinsically disordered protein. by K Sugase (2007)10.1038/nsb0596-427
/ Nat Struct Biol / Rapid, electrostatically assisted association of proteins. by G Schreiber (1996)10.1006/jmbi.1998.1747
/ J Mol Biol / Electrostatic enhancement of diffusion-controlled protein-protein association: comparison of theory and experiment on barnase and barstar. by M Vijayakumar (1998)10.1038/nature05201
/ Nature / Visualization of transient encounter complexes in protein-protein association. by C Tang (2006)10.1016/S0959-440X(02)00287-7
/ Curr Opin Struct Biol / Kinetic studies of protein-protein interactions. by G Schreiber (2002)10.1073/pnas.0408098102
/ Proc Natl Acad Sci U S A / Reaction coordinates and rates from transition paths. by RB Best (2005)10.1063/1.1630572
/ J Chem Phys / From transition paths to transition states and rate coefficients. by G Hummer (2004)10.1110/ps.03580104
/ Protein Sci / The effects of nonnative interactions on protein folding rates: theory and simulation. by C Clementi (2004)10.1021/bi0607305
/ Biochemistry / An isolated helix persists in a sparsely populated form of KIX under native conditions. by M Tollinger (2006)10.1073/pnas.160259697
/ Proc Natl Acad Sci U S A / Speeding molecular recognition by using the folding funnel: the fly-casting mechanism. by BA Shoemaker (2000)10.1016/S1097-2765(00)80279-8
/ Mol Cell / Analysis of an activator:coactivator complex reveals an essential role for secondary structure in transcriptional activation. by D Parker (1998)10.1006/jmbi.1996.0173
/ J Mol Biol / Structure of the transition state for folding of a protein derived from experiment and simulation. by V Daggett (1996)10.1073/pnas.2335541100
/ Proc Natl Acad Sci U S A / Folding a protein in a computer: an atomic description of the folding/unfolding of protein A. by AE Garcia (2003)10.1073/pnas.241378398
/ Proc Natl Acad Sci U S A / Constructing, verifying, and dissecting the folding transition state of chymotrypsin inhibitor 2 with all-atom simulations. by L Li (2001)10.1038/35054591
/ Nature / Three key residues form a critical contact network in a protein folding transition state. by M Vendruscolo (2001)10.1063/1.1313792
/ J Chem Phys / Energetic frustration and the nature of the transition state in protein folding. by JE Shea (2000)10.1016/S0022-2836(02)01379-7
/ J Mol Biol / Interplay among tertiary contacts, secondary structure formation and side-chain packing in the protein folding mechanism: all-atom representation study of protein L. by C Clementi (2003)10.1074/jbc.M207660200
/ J Biol Chem / Cooperativity in transcription factor binding to the coactivator CREB-binding protein (CBP). The mixed lineage leukemia protein (MLL) activation domain binds to an allosteric site on the KIX domain. by NK Goto (2002)10.1016/j.jmb.2005.09.059
/ J Mol Biol / Structural basis for cooperative transcription factor binding to the CBP coactivator. by RN De Guzman (2006)10.1016/S0021-9258(18)97476-4
/ J Biol Chem / Evidence for conformation changes induced by substrates of phosphoglucomutase. by JA Yankeelov Jr (1965)10.1110/ps.9.1.10
/ Protein Sci / Folding and binding cascades: dynamic landscapes and population shifts. by S Kumar (2000)10.1110/ps.21302
/ Protein Sci / Multiple diverse ligands binding at a single protein site: a matter of pre-existing populations. by B Ma (2002)10.1073/pnas.0603551103
/ Proc Natl Acad Sci U S A / Solution structure and dynamics of the complex between cytochrome c and cytochrome c peroxidase determined by paramagnetic NMR. by AN Volkov (2006)10.1126/science.2838904
/ Science / Brownian dynamics of cytochrome-c and cytochrome-c peroxidase association. by SH Northrup (1988)10.1002/(SICI)1097-0134(19990201)34:2<255::AID-PROT10>3.0.CO;2-O
/ Proteins / Protein-protein recognition: exploring the energy funnels near the binding sites. by C Zhang (1999)10.1016/S0092-8674(00)00168-9
/ Cell / Solution structure of the interacting domains of the Mad-Sin3 complex: implications for recruitment of a chromatin-modifying complex. by K Brubaker (2000)10.1038/nsmb798
/ Nat Struct Mol Biol / HBP1 and Mad1 repressors bind the Sin3 corepressor PAH2 domain with opposite helical orientations. by KA Swanson (2004)10.1016/j.febslet.2005.03.072
/ FEBS Lett / The interplay between structure and function in intrinsically unstructured proteins. by P Tompa (2005)10.1016/j.jmb.2006.12.006
/ J Mol Biol / Induced fit, folding, and recognition of the NF-kappaB-nuclear localization signals by IkappaBalpha and IkappaBbeta. by J Latzer (2007)10.1021/ar040204a
/ Acc Chem Res / Mechanisms of protein assembly: lessons from minimalist models. by Y Levy (2006)10.1073/pnas.2534828100
/ Proc Natl Acad Sci U S A / Protein topology determines binding mechanism. by Y Levy (2004)10.1371/journal.pcbi.0020078
/ PLoS Comput Biol / Single-molecule dynamics reveals cooperative binding-folding in protein recognition. by J Wang (2006)10.1103/PhysRevLett.96.168101
/ Phys Rev Lett / Dominant kinetic paths on biomolecular binding-folding energy landscape. by J Wang (2006)10.1016/j.jmb.2004.12.021
/ J Mol Biol / A survey of flexible protein binding mechanisms and their transition states using native topology based energy landscapes. by Y Levy (2005)10.1073/pnas.0702580104
/ Proc Natl Acad Sci U S A / Polyelectrostatic interactions of disordered ligands suggest a physical basis for ultrasensitivity. by M Borg (2007)10.1021/bi9923555
/ Biochemistry / Intrinsic structural disorder of the C-terminal activation domain from the bZIP transcription factor Fos. by KM Campbell (2000)10.1073/pnas.082121399
/ Proc Natl Acad Sci U S A / Structural basis for Hif-1 alpha/CBP recognition in the cellular hypoxic response. by SA Dames (2002)10.1038/nsb936
/ Nat Struct Biol / Structural basis for negative regulation of hypoxia-inducible factor-1alpha by CITED2. by SJ Freedman (2003)10.1073/pnas.082117899
/ Proc Natl Acad Sci U S A / Structural basis for recruitment of CBP/p300 by hypoxia-inducible factor-1 alpha. by SJ Freedman (2002)10.1002/prot.21089
/ Proteins / Intrinsically unstructured N-terminal domain of bZIP transcription factor HY5. by MK Yoon (2006)10.1016/j.jmb.2004.01.038
/ J Mol Biol / Solution structure of the KIX domain of CBP bound to the transactivation domain of c-Myb. by T Zor (2004)10.1016/j.jmb.2003.09.047
/ J Mol Biol / Improved Go-like models demonstrate the robustness of protein folding mechanisms towards non-native interactions. by J Karanicolas (2003)10.1006/jmbi.1996.0114
/ J Mol Biol / Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading. by S Miyazawa (1996)10.1002/jcc.540040211
/ J Comp Chem / Charmm-A program for macromolecular energy, minimization, and dynamics calculations. by BR Brooks (1983)10.1016/0009-2614(84)80098-6
/ Chem Phys Lett / Stochastic boundary-conditions for molecular-dynamics simulations of St2 water. by A Brunger (1984)10.1080/00268978800101881
/ Mol Phys / An analysis of the accuracy of Langevin and molecular-dynamics algorithms. by RW Pastor (1988)10.1016/0021-9991(77)90098-5
/ J Comput Phys / Numerical-integration of Cartesian equations of motion of a system with constraints - Molecular-dynamics of N-alkanes. by JP Ryckaert (1977)10.1016/j.str.2005.08.009
/ Structure / Slow protein conformational dynamics from multiple experimental structures: The helix/sheet transition of arc repressor. by RB Best (2005)10.1103/PhysRevLett.96.228104
/ Phys Rev Lett / Diffusive model of protein folding dynamics with Kramers turnover in rate. by RB Best (2006)
Dates
Type | When |
---|---|
Created | 17 years, 4 months ago (April 10, 2008, 5:33 p.m.) |
Deposited | 3 years, 11 months ago (Sept. 7, 2021, 3:13 p.m.) |
Indexed | 1 month ago (July 25, 2025, 6:14 a.m.) |
Issued | 17 years, 4 months ago (April 11, 2008) |
Published | 17 years, 4 months ago (April 11, 2008) |
Published Online | 17 years, 4 months ago (April 11, 2008) |
@article{Turjanski_2008, title={Binding-Induced Folding of a Natively Unstructured Transcription Factor}, volume={4}, ISSN={1553-7358}, url={http://dx.doi.org/10.1371/journal.pcbi.1000060}, DOI={10.1371/journal.pcbi.1000060}, number={4}, journal={PLoS Computational Biology}, publisher={Public Library of Science (PLoS)}, author={Turjanski, Adrian Gustavo and Gutkind, J. Silvio and Best, Robert B. and Hummer, Gerhard}, editor={Shakhnovich, Eugene I.}, year={2008}, month=apr, pages={e1000060} }