DOI: 10.1371/journal.pbio.1000074. A Computational Framework for Ultrastructural Mapping of Neural Circuitry

A Computational Framework for Ultrastructural Mapping of Neural Circuitry

10.1371/journal.pbio.1000074

Crossref journal-article

Public Library of Science (PLoS)

PLoS Biology (340)

Bibliography

Anderson, J. R., Jones, B. W., Yang, J.-H., Shaw, M. V., Watt, C. B., Koshevoy, P., Spaltenstein, J., Jurrus, E., UV, K., Whitaker, R. T., Mastronarde, D., Tasdizen, T., & Marc, R. E. (2009). A Computational Framework for Ultrastructural Mapping of Neural Circuitry. PLoS Biology, 7(3), e1000074.

Authors 13

James R Anderson (first)
Bryan W Jones (additional)
Jia-Hui Yang (additional)
Marguerite V Shaw (additional)
Carl B Watt (additional)
Pavel Koshevoy (additional)
Joel Spaltenstein (additional)
Elizabeth Jurrus (additional)
Kannan UV (additional)
Ross T Whitaker (additional)
David Mastronarde (additional)
Tolga Tasdizen (additional)
Robert E Marc (additional)

References 71 Referenced 112

10.1371/journal.pcbi.0010042 / PLoS Comput Biol by Sporns (2005)
{'key': 'journal-pbio-1000074-b002', 'first-page': '417', 'volume': '9', 'author': 'Lichtman', 'year': '2008', 'journal-title': 'Nat Rev Neurosci', 'ISSN': 'http://id.crossref.org/issn/1471-0048', 'issn-type': 'print'} / Nat Rev Neurosci by Lichtman (2008)
{'key': 'journal-pbio-1000074-b003', 'first-page': '305', 'volume': '413', 'author': 'MacNeil', 'year': '1999', 'journal-title': 'J Comp Neurol', 'ISSN': 'http://id.crossref.org/issn/0021-9967', 'issn-type': 'print'} / J Comp Neurol by MacNeil (1999)
{'key': 'journal-pbio-1000074-b004', 'first-page': '73', 'volume': '472', 'author': 'MacNeil', 'year': '2004', 'journal-title': 'J Comp Neurol', 'ISSN': 'http://id.crossref.org/issn/0021-9967', 'issn-type': 'print'} / J Comp Neurol by MacNeil (2004)
{'key': 'journal-pbio-1000074-b005', 'first-page': '413', 'volume': '22', 'author': 'Marc', 'year': '2002', 'journal-title': 'J Neurosci', 'ISSN': 'http://id.crossref.org/issn/0270-6474', 'issn-type': 'print'} / J Neurosci by Marc (2002)
{'key': 'journal-pbio-1000074-b006', 'first-page': '928', 'volume': '497', 'author': 'Otsuna', 'year': '2006', 'journal-title': 'J Comp Neurol', 'ISSN': 'http://id.crossref.org/issn/0021-9967', 'issn-type': 'print'} / J Comp Neurol by Otsuna (2006)
{'key': 'journal-pbio-1000074-b007', 'first-page': '25', 'volume': '55', 'author': 'Micheva', 'year': '2007', 'journal-title': 'Neuron', 'ISSN': 'http://id.crossref.org/issn/0896-6273', 'issn-type': 'print'} / Neuron by Micheva (2007)
{'key': 'journal-pbio-1000074-b008', 'first-page': '49', 'author': 'Vaney', 'year': '1990', 'journal-title': 'The mosaic of amacrine cells in the mammalian retina. Progress in retinal research'} / The mosaic of amacrine cells in the mammalian retina. Progress in retinal research by Vaney (1990)
{'key': 'journal-pbio-1000074-b009', 'first-page': '405', 'volume': '7', 'author': 'Peters', 'year': '1997', 'journal-title': 'Cereb Cortex', 'ISSN': 'http://id.crossref.org/issn/1047-3211', 'issn-type': 'print'} / Cereb Cortex by Peters (1997)
{'key': 'journal-pbio-1000074-b010', 'first-page': '15', 'volume': '13', 'author': 'Lund', 'year': '2003', 'journal-title': 'Cereb Cortex', 'ISSN': 'http://id.crossref.org/issn/1047-3211', 'issn-type': 'print'} / Cereb Cortex by Lund (2003)
{'key': 'journal-pbio-1000074-b012', 'first-page': '935', 'volume': '15', 'author': 'Kolb', 'year': '1974', 'journal-title': 'Invest Ophthal', 'ISSN': 'http://id.crossref.org/issn/0020-9988', 'issn-type': 'print'} / Invest Ophthal by Kolb (1974)
{'key': 'journal-pbio-1000074-b013', 'first-page': '613', 'volume': '381', 'author': 'Calkins', 'year': '1996', 'journal-title': 'Nature', 'ISSN': 'http://id.crossref.org/issn/1476-4687', 'issn-type': 'print'} / Nature by Calkins (1996)
{'key': 'journal-pbio-1000074-b014', 'first-page': '9881', 'volume': '23', 'author': 'Klug', 'year': '2003', 'journal-title': 'J Neurosci', 'ISSN': 'http://id.crossref.org/issn/0270-6474', 'issn-type': 'print'} / J Neurosci by Klug (2003)
{'key': 'journal-pbio-1000074-b015', 'first-page': '809', 'volume': '57', 'author': 'Crawley', 'year': '2008', 'journal-title': 'Neuron', 'ISSN': 'http://id.crossref.org/issn/0896-6273', 'issn-type': 'print'} / Neuron by Crawley (2008)
{'key': 'journal-pbio-1000074-b016', 'first-page': '607', 'volume': '22', 'author': 'Marc', 'year': '2003', 'journal-title': 'Prog Ret Eye Res', 'ISSN': 'http://id.crossref.org/issn/1350-9462', 'issn-type': 'print'} / Prog Ret Eye Res by Marc (2003)
{'key': 'journal-pbio-1000074-b017', 'first-page': '560', 'volume': '425', 'author': 'Marc', 'year': '2000', 'journal-title': 'J Comp Neurol', 'ISSN': 'http://id.crossref.org/issn/0021-9967', 'issn-type': 'print'} / J Comp Neurol by Marc (2000)
{'key': 'journal-pbio-1000074-b018', 'first-page': '1', 'volume': '8', 'author': 'Fiala', 'year': '2001', 'journal-title': 'J Am Med Inform Assoc', 'ISSN': 'http://id.crossref.org/issn/1067-5027', 'issn-type': 'print'} / J Am Med Inform Assoc by Fiala (2001)
{'key': 'journal-pbio-1000074-b019', 'first-page': '52', 'volume': '218', 'author': 'Fiala', 'year': '2005', 'journal-title': 'J Microscopy', 'ISSN': 'http://id.crossref.org/issn/0022-2720', 'issn-type': 'print'} / J Microscopy by Fiala (2005)
{'key': 'journal-pbio-1000074-b020', 'author': 'Fiala', 'year': '2002', 'journal-title': 'Proceedings of the 2002 World Congress on Computational Intelligence;'} / Proceedings of the 2002 World Congress on Computational Intelligence; by Fiala (2002)
{'key': 'journal-pbio-1000074-b021', 'first-page': '12101', 'volume': '26', 'author': 'Harris', 'year': '2006', 'journal-title': 'J Neurosci', 'ISSN': 'http://id.crossref.org/issn/0270-6474', 'issn-type': 'print'} / J Neurosci by Harris (2006)
10.1371/journal.pbio.0020329 / PLoS Biol by Denk (2004)
{'key': 'journal-pbio-1000074-b023', 'first-page': '562', 'volume': '16', 'author': 'Briggman', 'year': '2006', 'journal-title': 'Curr Opin Neurobiol', 'ISSN': 'http://id.crossref.org/issn/0959-4388', 'issn-type': 'print'} / Curr Opin Neurobiol by Briggman (2006)
{'key': 'journal-pbio-1000074-b024', 'first-page': '86', 'volume': '12', 'author': 'Hayworth', 'year': '2006', 'journal-title': 'Microsc Microanal', 'ISSN': 'http://id.crossref.org/issn/1431-9276', 'issn-type': 'print'} / Microsc Microanal by Hayworth (2006)
{'key': 'journal-pbio-1000074-b025', 'first-page': '2959', 'volume': '28', 'author': 'Knott', 'year': '2008', 'journal-title': 'J Neurosci', 'ISSN': 'http://id.crossref.org/issn/0270-6474', 'issn-type': 'print'} / J Neurosci by Knott (2008)
{'key': 'journal-pbio-1000074-b026', 'first-page': '782', 'volume': '431', 'author': 'Chklovskii', 'year': '2004', 'journal-title': 'Nature', 'ISSN': 'http://id.crossref.org/issn/1476-4687', 'issn-type': 'print'} / Nature by Chklovskii (2004)
{'key': 'journal-pbio-1000074-b027', 'first-page': '593', 'volume': '30', 'author': 'Marc', 'year': '2002', 'journal-title': 'J Neurocytol', 'ISSN': 'http://id.crossref.org/issn/0300-4864', 'issn-type': 'print'} / J Neurocytol by Marc (2002)
{'key': 'journal-pbio-1000074-b028', 'first-page': '431', 'volume': '11', 'author': 'Masland', 'year': '2001', 'journal-title': 'Curr Opinion Neurobiol', 'ISSN': 'http://id.crossref.org/issn/0959-4388', 'issn-type': 'print'} / Curr Opinion Neurobiol by Masland (2001)
{'key': 'journal-pbio-1000074-b029', 'first-page': '234', 'author': 'Sterling', 'year': '2004', 'journal-title': 'The visual neurosciences'} / The visual neurosciences by Sterling (2004)
{'key': 'journal-pbio-1000074-b030', 'first-page': '3069', 'volume': '80', 'author': 'Miller', 'year': '1983', 'journal-title': 'Proc Natl Acad Sci U S A', 'ISSN': 'http://id.crossref.org/issn/1091-6490', 'issn-type': 'print'} / Proc Natl Acad Sci U S A by Miller (1983)
{'key': 'journal-pbio-1000074-b032', 'author': 'Weiss', 'year': '1996', 'journal-title': 'Cellular biophysics: electrical properties'} / Cellular biophysics: electrical properties by Weiss (1996)
{'key': 'journal-pbio-1000074-b033', 'first-page': '3831', 'volume': '22', 'author': 'Rockhill', 'year': '2002', 'journal-title': 'J Neurosci', 'ISSN': 'http://id.crossref.org/issn/0270-6474', 'issn-type': 'print'} / J Neurosci by Rockhill (2002)
{'key': 'journal-pbio-1000074-b034', 'first-page': '491', 'author': 'Berson', 'year': '2008', 'journal-title': 'The senses: a comprehensive reference vision'} / The senses: a comprehensive reference vision by Berson (2008)
{'key': 'journal-pbio-1000074-b035', 'first-page': '1657', 'volume': '59', 'author': 'Muller', 'year': '1988', 'journal-title': 'J Neurophysiol', 'ISSN': 'http://id.crossref.org/issn/1522-1598', 'issn-type': 'print'} / J Neurophysiol by Muller (1988)
{'key': 'journal-pbio-1000074-b036', 'first-page': '703', 'volume': '36', 'author': 'Deans', 'year': '2002', 'journal-title': 'Neuron', 'ISSN': 'http://id.crossref.org/issn/0896-6273', 'issn-type': 'print'} / Neuron by Deans (2002)
{'key': 'journal-pbio-1000074-b037', 'first-page': '241', 'volume': '232', 'author': 'Marc', 'year': '1985', 'journal-title': 'J Comp Neurol', 'ISSN': 'http://id.crossref.org/issn/0021-9967', 'issn-type': 'print'} / J Comp Neurol by Marc (1985)
{'key': 'journal-pbio-1000074-b038', 'first-page': '1314', 'volume': '6', 'author': 'Sterling', 'year': '1986', 'journal-title': 'J Neurosci', 'ISSN': 'http://id.crossref.org/issn/0270-6474', 'issn-type': 'print'} / J Neurosci by Sterling (1986)
{'key': 'journal-pbio-1000074-b039', 'first-page': '67', 'author': 'Marc', 'year': '1989', 'journal-title': 'Progress in retinal research'} / Progress in retinal research by Marc (1989)
{'key': 'journal-pbio-1000074-b040', 'first-page': '152', 'volume': '325', 'author': 'Strettoi', 'year': '1992', 'journal-title': 'J Comp Neurol', 'ISSN': 'http://id.crossref.org/issn/0021-9967', 'issn-type': 'print'} / J Comp Neurol by Strettoi (1992)
{'key': 'journal-pbio-1000074-b041', 'first-page': '444', 'volume': '233', 'author': 'Vaney', 'year': '1986', 'journal-title': 'Science', 'ISSN': 'http://id.crossref.org/issn/0193-4511', 'issn-type': 'print'} / Science by Vaney (1986)
{'key': 'journal-pbio-1000074-b042', 'first-page': '119', 'volume': '19', 'author': 'Li', 'year': '2002', 'journal-title': 'Vis Neurosci', 'ISSN': 'http://id.crossref.org/issn/0952-5238', 'issn-type': 'print'} / Vis Neurosci by Li (2002)
{'key': 'journal-pbio-1000074-b043', 'first-page': '481', 'volume': '21', 'author': 'Soucy', 'year': '1998', 'journal-title': 'Neuron', 'ISSN': 'http://id.crossref.org/issn/0896-6273', 'issn-type': 'print'} / Neuron by Soucy (1998)
{'key': 'journal-pbio-1000074-b044', 'first-page': '8616', 'volume': '21', 'author': 'Tsukamoto', 'year': '2001', 'journal-title': 'J Neurosci', 'ISSN': 'http://id.crossref.org/issn/0270-6474', 'issn-type': 'print'} / J Neurosci by Tsukamoto (2001)
{'key': 'journal-pbio-1000074-b045', 'first-page': '1121', 'volume': '3', 'author': 'Peng', 'year': '2000', 'journal-title': 'Nat Neurosci', 'ISSN': 'http://id.crossref.org/issn/1097-6256', 'issn-type': 'print'} / Nat Neurosci by Peng (2000)
{'key': 'journal-pbio-1000074-b046', 'first-page': '1', 'volume': '11', 'author': 'Hall', 'year': '1991', 'journal-title': 'J Neurosci', 'ISSN': 'http://id.crossref.org/issn/0270-6474', 'issn-type': 'print'} / J Neurosci by Hall (1991)
{'key': 'journal-pbio-1000074-b047', 'first-page': '395', 'volume': '48', 'author': 'Hall', 'year': '1995', 'journal-title': 'Methods Cell Biol', 'ISSN': 'http://id.crossref.org/issn/0091-679X', 'issn-type': 'print'} / Methods Cell Biol by Hall (1995)
{'key': 'journal-pbio-1000074-b048', 'author': 'Altun', 'year': '2002–2006', 'journal-title': 'WormAtlas.'} / WormAtlas. by Altun (2002–2006)
{'key': 'journal-pbio-1000074-b049', 'first-page': '4723', 'volume': '103', 'author': 'Chen', 'year': '2006', 'journal-title': 'Proc Natl Acad Sci U S A', 'ISSN': 'http://id.crossref.org/issn/1091-6490', 'issn-type': 'print'} / Proc Natl Acad Sci U S A by Chen (2006)
{'key': 'journal-pbio-1000074-b050', 'first-page': '327', 'volume': '275', 'author': 'White', 'year': '1976', 'journal-title': 'Philos Trans R Soc Lond B Biol Sci', 'ISSN': 'http://id.crossref.org/issn/1471-2970', 'issn-type': 'print'} / Philos Trans R Soc Lond B Biol Sci by White (1976)
{'key': 'journal-pbio-1000074-b051', 'first-page': '207', 'volume': '236', 'author': 'Levinthal', 'year': '1972', 'journal-title': 'Nature', 'ISSN': 'http://id.crossref.org/issn/1476-4687', 'issn-type': 'print'} / Nature by Levinthal (1972)
{'key': 'journal-pbio-1000074-b052', 'first-page': '343', 'volume': '466', 'author': 'Eglen', 'year': '2003', 'journal-title': 'J Comp Neurol', 'ISSN': 'http://id.crossref.org/issn/0021-9967', 'issn-type': 'print'} / J Comp Neurol by Eglen (2003)
{'key': 'journal-pbio-1000074-b053', 'first-page': '43', 'volume': '374', 'author': 'Deerinck', 'year': '2007', 'journal-title': 'Methods Mol Biol', 'ISSN': 'http://id.crossref.org/issn/1064-3745', 'issn-type': 'print'} / Methods Mol Biol by Deerinck (2007)
{'key': 'journal-pbio-1000074-b054', 'first-page': '5106', 'volume': '15', 'author': 'Marc', 'year': '1995', 'journal-title': 'J Neurosci', 'ISSN': 'http://id.crossref.org/issn/0270-6474', 'issn-type': 'print'} / J Neurosci by Marc (1995)
{'key': 'journal-pbio-1000074-b055', 'first-page': '65', 'volume': '407', 'author': 'Marc', 'year': '1999', 'journal-title': 'J Comp Neurol', 'ISSN': 'http://id.crossref.org/issn/0021-9967', 'issn-type': 'print'} / J Comp Neurol by Marc (1999)
{'key': 'journal-pbio-1000074-b056', 'first-page': '1', 'volume': '464', 'author': 'Jones', 'year': '2003', 'journal-title': 'J Comp Neurol', 'ISSN': 'http://id.crossref.org/issn/0021-9967', 'issn-type': 'print'} / J Comp Neurol by Jones (2003)
{'key': 'journal-pbio-1000074-b057', 'first-page': '1132', 'volume': '10', 'author': 'Hill', 'year': '2000', 'journal-title': 'Cereb Cortex', 'ISSN': 'http://id.crossref.org/issn/1047-3211', 'issn-type': 'print'} / Cereb Cortex by Hill (2000)
{'key': 'journal-pbio-1000074-b058', 'first-page': '679', 'volume': '11', 'author': 'Hill', 'year': '2001', 'journal-title': 'Cereb Cortex', 'ISSN': 'http://id.crossref.org/issn/1047-3211', 'issn-type': 'print'} / Cereb Cortex by Hill (2001)
{'key': 'journal-pbio-1000074-b059', 'first-page': '6807', 'volume': '16', 'author': 'Kalloniatis', 'year': '1996', 'journal-title': 'J Neurosci', 'ISSN': 'http://id.crossref.org/issn/0270-6474', 'issn-type': 'print'} / J Neurosci by Kalloniatis (1996)
{'key': 'journal-pbio-1000074-b060', 'first-page': '47', 'volume': '407', 'author': 'Marc', 'year': '1999', 'journal-title': 'J Comp Neurol', 'ISSN': 'http://id.crossref.org/issn/0021-9967', 'issn-type': 'print'} / J Comp Neurol by Marc (1999)
{'key': 'journal-pbio-1000074-b061', 'first-page': '265', 'volume': '2', 'author': 'Stevens', 'year': '1980', 'journal-title': 'Brain Res', 'ISSN': 'http://id.crossref.org/issn/0006-8993', 'issn-type': 'print'} / Brain Res by Stevens (1980)
{'key': 'journal-pbio-1000074-b062', 'first-page': '561', 'volume': '243', 'author': 'Linberg', 'year': '1986', 'journal-title': 'J Comp Neurol', 'ISSN': 'http://id.crossref.org/issn/0021-9967', 'issn-type': 'print'} / J Comp Neurol by Linberg (1986)
{'key': 'journal-pbio-1000074-b063', 'first-page': '85', 'volume': '329', 'author': 'Kolb', 'year': '1993', 'journal-title': 'J Comp Neurol', 'ISSN': 'http://id.crossref.org/issn/0021-9967', 'issn-type': 'print'} / J Comp Neurol by Kolb (1993)
{'key': 'journal-pbio-1000074-b064', 'first-page': '2646', 'volume': '27', 'author': 'Calkins', 'year': '2007', 'journal-title': 'J Neurosci', 'ISSN': 'http://id.crossref.org/issn/0270-6474', 'issn-type': 'print'} / J Neurosci by Calkins (2007)
{'key': 'journal-pbio-1000074-b065', 'first-page': '2685', 'volume': '12', 'author': 'Harris', 'year': '1997', 'journal-title': 'J Neurosci', 'ISSN': 'http://id.crossref.org/issn/0270-6474', 'issn-type': 'print'} / J Neurosci by Harris (1997)
{'key': 'journal-pbio-1000074-b066', 'first-page': '317', 'volume': '207', 'author': 'Stevens', 'year': '1980', 'journal-title': 'Science', 'ISSN': 'http://id.crossref.org/issn/0193-4511', 'issn-type': 'print'} / Science by Stevens (1980)
{'key': 'journal-pbio-1000074-b067', 'first-page': '3364', 'volume': '48', 'author': 'Marc', 'year': '2007', 'journal-title': 'Invest Ophthal Vis Sci', 'ISSN': 'http://id.crossref.org/issn/0146-0404', 'issn-type': 'print'} / Invest Ophthal Vis Sci by Marc (2007)
{'key': 'journal-pbio-1000074-b068', 'first-page': '349', 'volume': '167', 'author': 'Macke', 'year': '2008', 'journal-title': 'J Neurosci Methods', 'ISSN': 'http://id.crossref.org/issn/0165-0270', 'issn-type': 'print'} / J Neurosci Methods by Macke (2008)
{'key': 'journal-pbio-1000074-b069', 'first-page': '180', 'volume': '13', 'author': 'Jurrus', 'year': '2008', 'journal-title': 'Med Image Anal', 'ISSN': 'http://id.crossref.org/issn/1361-8415', 'issn-type': 'print'} / Med Image Anal by Jurrus (2008)
{'key': 'journal-pbio-1000074-b070', 'first-page': '782', 'volume': '14', 'author': 'Marc', 'year': '2008', 'journal-title': 'Mol Vis', 'ISSN': 'http://id.crossref.org/issn/1090-0535', 'issn-type': 'print'} / Mol Vis by Marc (2008)
{'key': 'journal-pbio-1000074-b071', 'first-page': '4006', 'volume': '10', 'author': 'Marc', 'year': '1990', 'journal-title': 'J Neurosci', 'ISSN': 'http://id.crossref.org/issn/0270-6474', 'issn-type': 'print'} / J Neurosci by Marc (1990)
{'key': 'journal-pbio-1000074-b072', 'first-page': '36', 'volume': '152', 'author': 'Mastronarde', 'year': '2005', 'journal-title': 'J Struct Biol', 'ISSN': 'http://id.crossref.org/issn/1047-8477', 'issn-type': 'print'} / J Struct Biol by Mastronarde (2005)
{'key': 'journal-pbio-1000074-b073', 'author': 'Rasband', 'year': '2007', 'journal-title': 'ImageJ'} / ImageJ by Rasband (2007)

Dates

Type	When
Created	16 years, 5 months ago (March 30, 2009, 10:18 a.m.)
Deposited	5 years, 3 months ago (May 8, 2020, 2:56 p.m.)
Indexed	5 days, 22 hours ago (Aug. 26, 2025, 3:08 a.m.)
Issued	16 years, 5 months ago (March 31, 2009)
Published	16 years, 5 months ago (March 31, 2009)
Published Online	16 years, 5 months ago (March 31, 2009)

Funders 0

None

BibTeX

@article{Anderson_2009, title={A Computational Framework for Ultrastructural Mapping of Neural Circuitry}, volume={7}, ISSN={1545-7885}, url={http://dx.doi.org/10.1371/journal.pbio.1000074}, DOI={10.1371/journal.pbio.1000074}, number={3}, journal={PLoS Biology}, publisher={Public Library of Science (PLoS)}, author={Anderson, James R and Jones, Bryan W and Yang, Jia-Hui and Shaw, Marguerite V and Watt, Carl B and Koshevoy, Pavel and Spaltenstein, Joel and Jurrus, Elizabeth and UV, Kannan and Whitaker, Ross T and Mastronarde, David and Tasdizen, Tolga and Marc, Robert E}, editor={Harris, Kristen M}, year={2009}, month=mar, pages={e1000074} }

JSON

{
  "indexed": {
    "date-parts": [
      [
        2025,
        8,
        26
      ]
    ],
    "date-time": "2025-08-26T07:08:35Z",
    "timestamp": 1756192115510
  },
  "reference-count": 71,
  "publisher": "Public Library of Science (PLoS)",
  "issue": "3",
  "license": [
    {
      "start": {
        "date-parts": [
          [
            2009,
            3,
            31
          ]
        ],
        "date-time": "2009-03-31T00:00:00Z",
        "timestamp": 1238457600000
      },
      "content-version": "unspecified",
      "delay-in-days": 0,
      "URL": "http://creativecommons.org/licenses/by/4.0/"
    }
  ],
  "content-domain": {
    "domain": [
      "www.plosbiology.org"
    ],
    "crossmark-restriction": false
  },
  "DOI": "10.1371/journal.pbio.1000074",
  "type": "journal-article",
  "created": {
    "date-parts": [
      [
        2009,
        3,
        30
      ]
    ],
    "date-time": "2009-03-30T14:18:23Z",
    "timestamp": 1238422703000
  },
  "page": "e1000074",
  "update-policy": "http://dx.doi.org/10.1371/journal.pbio.corrections_policy",
  "source": "Crossref",
  "is-referenced-by-count": 112,
  "title": "A Computational Framework for Ultrastructural Mapping of Neural Circuitry",
  "prefix": "10.1371",
  "volume": "7",
  "author": [
    {
      "given": "James R",
      "family": "Anderson",
      "sequence": "first",
      "affiliation": []
    },
    {
      "given": "Bryan W",
      "family": "Jones",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Jia-Hui",
      "family": "Yang",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Marguerite V",
      "family": "Shaw",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Carl B",
      "family": "Watt",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Pavel",
      "family": "Koshevoy",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Joel",
      "family": "Spaltenstein",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Elizabeth",
      "family": "Jurrus",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Kannan",
      "family": "UV",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Ross T",
      "family": "Whitaker",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "David",
      "family": "Mastronarde",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Tolga",
      "family": "Tasdizen",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Robert E",
      "family": "Marc",
      "sequence": "additional",
      "affiliation": []
    }
  ],
  "member": "340",
  "published-online": {
    "date-parts": [
      [
        2009,
        3,
        31
      ]
    ]
  },
  "reference": [
    {
      "key": "journal-pbio-1000074-b001",
      "doi-asserted-by": "crossref",
      "DOI": "10.1371/journal.pcbi.0010042",
      "volume": "1",
      "author": "Sporns",
      "year": "2005",
      "journal-title": "PLoS Comput Biol"
    },
    {
      "key": "journal-pbio-1000074-b002",
      "first-page": "417",
      "volume": "9",
      "author": "Lichtman",
      "year": "2008",
      "journal-title": "Nat Rev Neurosci",
      "ISSN": "http://id.crossref.org/issn/1471-0048",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b003",
      "first-page": "305",
      "volume": "413",
      "author": "MacNeil",
      "year": "1999",
      "journal-title": "J Comp Neurol",
      "ISSN": "http://id.crossref.org/issn/0021-9967",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b004",
      "first-page": "73",
      "volume": "472",
      "author": "MacNeil",
      "year": "2004",
      "journal-title": "J Comp Neurol",
      "ISSN": "http://id.crossref.org/issn/0021-9967",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b005",
      "first-page": "413",
      "volume": "22",
      "author": "Marc",
      "year": "2002",
      "journal-title": "J Neurosci",
      "ISSN": "http://id.crossref.org/issn/0270-6474",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b006",
      "first-page": "928",
      "volume": "497",
      "author": "Otsuna",
      "year": "2006",
      "journal-title": "J Comp Neurol",
      "ISSN": "http://id.crossref.org/issn/0021-9967",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b007",
      "first-page": "25",
      "volume": "55",
      "author": "Micheva",
      "year": "2007",
      "journal-title": "Neuron",
      "ISSN": "http://id.crossref.org/issn/0896-6273",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b008",
      "first-page": "49",
      "author": "Vaney",
      "year": "1990",
      "journal-title": "The mosaic of amacrine cells in the mammalian retina. Progress in retinal research"
    },
    {
      "key": "journal-pbio-1000074-b009",
      "first-page": "405",
      "volume": "7",
      "author": "Peters",
      "year": "1997",
      "journal-title": "Cereb Cortex",
      "ISSN": "http://id.crossref.org/issn/1047-3211",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b010",
      "first-page": "15",
      "volume": "13",
      "author": "Lund",
      "year": "2003",
      "journal-title": "Cereb Cortex",
      "ISSN": "http://id.crossref.org/issn/1047-3211",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b012",
      "first-page": "935",
      "volume": "15",
      "author": "Kolb",
      "year": "1974",
      "journal-title": "Invest Ophthal",
      "ISSN": "http://id.crossref.org/issn/0020-9988",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b013",
      "first-page": "613",
      "volume": "381",
      "author": "Calkins",
      "year": "1996",
      "journal-title": "Nature",
      "ISSN": "http://id.crossref.org/issn/1476-4687",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b014",
      "first-page": "9881",
      "volume": "23",
      "author": "Klug",
      "year": "2003",
      "journal-title": "J Neurosci",
      "ISSN": "http://id.crossref.org/issn/0270-6474",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b015",
      "first-page": "809",
      "volume": "57",
      "author": "Crawley",
      "year": "2008",
      "journal-title": "Neuron",
      "ISSN": "http://id.crossref.org/issn/0896-6273",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b016",
      "first-page": "607",
      "volume": "22",
      "author": "Marc",
      "year": "2003",
      "journal-title": "Prog Ret Eye Res",
      "ISSN": "http://id.crossref.org/issn/1350-9462",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b017",
      "first-page": "560",
      "volume": "425",
      "author": "Marc",
      "year": "2000",
      "journal-title": "J Comp Neurol",
      "ISSN": "http://id.crossref.org/issn/0021-9967",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b018",
      "first-page": "1",
      "volume": "8",
      "author": "Fiala",
      "year": "2001",
      "journal-title": "J Am Med Inform Assoc",
      "ISSN": "http://id.crossref.org/issn/1067-5027",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b019",
      "first-page": "52",
      "volume": "218",
      "author": "Fiala",
      "year": "2005",
      "journal-title": "J Microscopy",
      "ISSN": "http://id.crossref.org/issn/0022-2720",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b020",
      "author": "Fiala",
      "year": "2002",
      "journal-title": "Proceedings of the 2002 World Congress on Computational Intelligence;"
    },
    {
      "key": "journal-pbio-1000074-b021",
      "first-page": "12101",
      "volume": "26",
      "author": "Harris",
      "year": "2006",
      "journal-title": "J Neurosci",
      "ISSN": "http://id.crossref.org/issn/0270-6474",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b022",
      "doi-asserted-by": "crossref",
      "DOI": "10.1371/journal.pbio.0020329",
      "volume": "2",
      "author": "Denk",
      "year": "2004",
      "journal-title": "PLoS Biol"
    },
    {
      "key": "journal-pbio-1000074-b023",
      "first-page": "562",
      "volume": "16",
      "author": "Briggman",
      "year": "2006",
      "journal-title": "Curr Opin Neurobiol",
      "ISSN": "http://id.crossref.org/issn/0959-4388",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b024",
      "first-page": "86",
      "volume": "12",
      "author": "Hayworth",
      "year": "2006",
      "journal-title": "Microsc Microanal",
      "ISSN": "http://id.crossref.org/issn/1431-9276",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b025",
      "first-page": "2959",
      "volume": "28",
      "author": "Knott",
      "year": "2008",
      "journal-title": "J Neurosci",
      "ISSN": "http://id.crossref.org/issn/0270-6474",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b026",
      "first-page": "782",
      "volume": "431",
      "author": "Chklovskii",
      "year": "2004",
      "journal-title": "Nature",
      "ISSN": "http://id.crossref.org/issn/1476-4687",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b027",
      "first-page": "593",
      "volume": "30",
      "author": "Marc",
      "year": "2002",
      "journal-title": "J Neurocytol",
      "ISSN": "http://id.crossref.org/issn/0300-4864",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b028",
      "first-page": "431",
      "volume": "11",
      "author": "Masland",
      "year": "2001",
      "journal-title": "Curr Opinion Neurobiol",
      "ISSN": "http://id.crossref.org/issn/0959-4388",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b029",
      "first-page": "234",
      "author": "Sterling",
      "year": "2004",
      "journal-title": "The visual neurosciences"
    },
    {
      "key": "journal-pbio-1000074-b030",
      "first-page": "3069",
      "volume": "80",
      "author": "Miller",
      "year": "1983",
      "journal-title": "Proc Natl Acad Sci U S A",
      "ISSN": "http://id.crossref.org/issn/1091-6490",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b032",
      "author": "Weiss",
      "year": "1996",
      "journal-title": "Cellular biophysics: electrical properties"
    },
    {
      "key": "journal-pbio-1000074-b033",
      "first-page": "3831",
      "volume": "22",
      "author": "Rockhill",
      "year": "2002",
      "journal-title": "J Neurosci",
      "ISSN": "http://id.crossref.org/issn/0270-6474",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b034",
      "first-page": "491",
      "author": "Berson",
      "year": "2008",
      "journal-title": "The senses: a comprehensive reference vision"
    },
    {
      "key": "journal-pbio-1000074-b035",
      "first-page": "1657",
      "volume": "59",
      "author": "Muller",
      "year": "1988",
      "journal-title": "J Neurophysiol",
      "ISSN": "http://id.crossref.org/issn/1522-1598",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b036",
      "first-page": "703",
      "volume": "36",
      "author": "Deans",
      "year": "2002",
      "journal-title": "Neuron",
      "ISSN": "http://id.crossref.org/issn/0896-6273",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b037",
      "first-page": "241",
      "volume": "232",
      "author": "Marc",
      "year": "1985",
      "journal-title": "J Comp Neurol",
      "ISSN": "http://id.crossref.org/issn/0021-9967",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b038",
      "first-page": "1314",
      "volume": "6",
      "author": "Sterling",
      "year": "1986",
      "journal-title": "J Neurosci",
      "ISSN": "http://id.crossref.org/issn/0270-6474",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b039",
      "first-page": "67",
      "author": "Marc",
      "year": "1989",
      "journal-title": "Progress in retinal research"
    },
    {
      "key": "journal-pbio-1000074-b040",
      "first-page": "152",
      "volume": "325",
      "author": "Strettoi",
      "year": "1992",
      "journal-title": "J Comp Neurol",
      "ISSN": "http://id.crossref.org/issn/0021-9967",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b041",
      "first-page": "444",
      "volume": "233",
      "author": "Vaney",
      "year": "1986",
      "journal-title": "Science",
      "ISSN": "http://id.crossref.org/issn/0193-4511",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b042",
      "first-page": "119",
      "volume": "19",
      "author": "Li",
      "year": "2002",
      "journal-title": "Vis Neurosci",
      "ISSN": "http://id.crossref.org/issn/0952-5238",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b043",
      "first-page": "481",
      "volume": "21",
      "author": "Soucy",
      "year": "1998",
      "journal-title": "Neuron",
      "ISSN": "http://id.crossref.org/issn/0896-6273",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b044",
      "first-page": "8616",
      "volume": "21",
      "author": "Tsukamoto",
      "year": "2001",
      "journal-title": "J Neurosci",
      "ISSN": "http://id.crossref.org/issn/0270-6474",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b045",
      "first-page": "1121",
      "volume": "3",
      "author": "Peng",
      "year": "2000",
      "journal-title": "Nat Neurosci",
      "ISSN": "http://id.crossref.org/issn/1097-6256",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b046",
      "first-page": "1",
      "volume": "11",
      "author": "Hall",
      "year": "1991",
      "journal-title": "J Neurosci",
      "ISSN": "http://id.crossref.org/issn/0270-6474",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b047",
      "first-page": "395",
      "volume": "48",
      "author": "Hall",
      "year": "1995",
      "journal-title": "Methods Cell Biol",
      "ISSN": "http://id.crossref.org/issn/0091-679X",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b048",
      "author": "Altun",
      "year": "2002&ndash;2006",
      "journal-title": "WormAtlas."
    },
    {
      "key": "journal-pbio-1000074-b049",
      "first-page": "4723",
      "volume": "103",
      "author": "Chen",
      "year": "2006",
      "journal-title": "Proc Natl Acad Sci U S A",
      "ISSN": "http://id.crossref.org/issn/1091-6490",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b050",
      "first-page": "327",
      "volume": "275",
      "author": "White",
      "year": "1976",
      "journal-title": "Philos Trans R Soc Lond B Biol Sci",
      "ISSN": "http://id.crossref.org/issn/1471-2970",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b051",
      "first-page": "207",
      "volume": "236",
      "author": "Levinthal",
      "year": "1972",
      "journal-title": "Nature",
      "ISSN": "http://id.crossref.org/issn/1476-4687",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b052",
      "first-page": "343",
      "volume": "466",
      "author": "Eglen",
      "year": "2003",
      "journal-title": "J Comp Neurol",
      "ISSN": "http://id.crossref.org/issn/0021-9967",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b053",
      "first-page": "43",
      "volume": "374",
      "author": "Deerinck",
      "year": "2007",
      "journal-title": "Methods Mol Biol",
      "ISSN": "http://id.crossref.org/issn/1064-3745",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b054",
      "first-page": "5106",
      "volume": "15",
      "author": "Marc",
      "year": "1995",
      "journal-title": "J Neurosci",
      "ISSN": "http://id.crossref.org/issn/0270-6474",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b055",
      "first-page": "65",
      "volume": "407",
      "author": "Marc",
      "year": "1999",
      "journal-title": "J Comp Neurol",
      "ISSN": "http://id.crossref.org/issn/0021-9967",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b056",
      "first-page": "1",
      "volume": "464",
      "author": "Jones",
      "year": "2003",
      "journal-title": "J Comp Neurol",
      "ISSN": "http://id.crossref.org/issn/0021-9967",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b057",
      "first-page": "1132",
      "volume": "10",
      "author": "Hill",
      "year": "2000",
      "journal-title": "Cereb Cortex",
      "ISSN": "http://id.crossref.org/issn/1047-3211",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b058",
      "first-page": "679",
      "volume": "11",
      "author": "Hill",
      "year": "2001",
      "journal-title": "Cereb Cortex",
      "ISSN": "http://id.crossref.org/issn/1047-3211",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b059",
      "first-page": "6807",
      "volume": "16",
      "author": "Kalloniatis",
      "year": "1996",
      "journal-title": "J Neurosci",
      "ISSN": "http://id.crossref.org/issn/0270-6474",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b060",
      "first-page": "47",
      "volume": "407",
      "author": "Marc",
      "year": "1999",
      "journal-title": "J Comp Neurol",
      "ISSN": "http://id.crossref.org/issn/0021-9967",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b061",
      "first-page": "265",
      "volume": "2",
      "author": "Stevens",
      "year": "1980",
      "journal-title": "Brain Res",
      "ISSN": "http://id.crossref.org/issn/0006-8993",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b062",
      "first-page": "561",
      "volume": "243",
      "author": "Linberg",
      "year": "1986",
      "journal-title": "J Comp Neurol",
      "ISSN": "http://id.crossref.org/issn/0021-9967",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b063",
      "first-page": "85",
      "volume": "329",
      "author": "Kolb",
      "year": "1993",
      "journal-title": "J Comp Neurol",
      "ISSN": "http://id.crossref.org/issn/0021-9967",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b064",
      "first-page": "2646",
      "volume": "27",
      "author": "Calkins",
      "year": "2007",
      "journal-title": "J Neurosci",
      "ISSN": "http://id.crossref.org/issn/0270-6474",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b065",
      "first-page": "2685",
      "volume": "12",
      "author": "Harris",
      "year": "1997",
      "journal-title": "J Neurosci",
      "ISSN": "http://id.crossref.org/issn/0270-6474",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b066",
      "first-page": "317",
      "volume": "207",
      "author": "Stevens",
      "year": "1980",
      "journal-title": "Science",
      "ISSN": "http://id.crossref.org/issn/0193-4511",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b067",
      "first-page": "3364",
      "volume": "48",
      "author": "Marc",
      "year": "2007",
      "journal-title": "Invest Ophthal Vis Sci",
      "ISSN": "http://id.crossref.org/issn/0146-0404",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b068",
      "first-page": "349",
      "volume": "167",
      "author": "Macke",
      "year": "2008",
      "journal-title": "J Neurosci Methods",
      "ISSN": "http://id.crossref.org/issn/0165-0270",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b069",
      "first-page": "180",
      "volume": "13",
      "author": "Jurrus",
      "year": "2008",
      "journal-title": "Med Image Anal",
      "ISSN": "http://id.crossref.org/issn/1361-8415",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b070",
      "first-page": "782",
      "volume": "14",
      "author": "Marc",
      "year": "2008",
      "journal-title": "Mol Vis",
      "ISSN": "http://id.crossref.org/issn/1090-0535",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b071",
      "first-page": "4006",
      "volume": "10",
      "author": "Marc",
      "year": "1990",
      "journal-title": "J Neurosci",
      "ISSN": "http://id.crossref.org/issn/0270-6474",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b072",
      "first-page": "36",
      "volume": "152",
      "author": "Mastronarde",
      "year": "2005",
      "journal-title": "J Struct Biol",
      "ISSN": "http://id.crossref.org/issn/1047-8477",
      "issn-type": "print"
    },
    {
      "key": "journal-pbio-1000074-b073",
      "author": "Rasband",
      "year": "2007",
      "journal-title": "ImageJ"
    }
  ],
  "container-title": "PLoS Biology",
  "original-title": [],
  "language": "en",
  "deposited": {
    "date-parts": [
      [
        2020,
        5,
        8
      ]
    ],
    "date-time": "2020-05-08T18:56:18Z",
    "timestamp": 1588964178000
  },
  "score": 1,
  "resource": {
    "primary": {
      "URL": "https://dx.plos.org/10.1371/journal.pbio.1000074"
    }
  },
  "subtitle": [],
  "editor": [
    {
      "given": "Kristen M",
      "family": "Harris",
      "sequence": "first",
      "affiliation": []
    }
  ],
  "short-title": [],
  "issued": {
    "date-parts": [
      [
        2009,
        3,
        31
      ]
    ]
  },
  "references-count": 71,
  "journal-issue": {
    "issue": "3",
    "published-online": {
      "date-parts": [
        [
          2009,
          3,
          31
        ]
      ]
    }
  },
  "URL": "http://dx.doi.org/10.1371/journal.pbio.1000074",
  "relation": {},
  "ISSN": [
    "1545-7885"
  ],
  "subject": [],
  "container-title-short": "PLoS Biol",
  "published": {
    "date-parts": [
      [
        2009,
        3,
        31
      ]
    ]
  }
}