DOI: 10.1186/gb-2004-5-5-r35. Prolinks: a database of protein functional linkages derived from coevolution

Prolinks: a database of protein functional linkages derived from coevolution

10.1186/gb-2004-5-5-r35

Crossref journal-article

Springer Science and Business Media LLC

Genome Biology (297)

Bibliography

Bowers, P. M., Pellegrini, M., Thompson, M. J., Fierro, J., Yeates, T. O., & Eisenberg, D. (2004). Prolinks: a database of protein functional linkages derived from coevolution. Genome Biology, 5(5).

Authors 6

Peter M Bowers (first)
Matteo Pellegrini (additional)
Mike J Thompson (additional)
Joe Fierro (additional)
Todd O Yeates (additional)
David Eisenberg (additional)

References 30 Referenced 228

Eisenberg D, Marcotte EM, Xenarios I, Yeates TO: Protein function in the post-genomic era. Nature. 2000, 405: 823-826. 10.1038/35015694. (10.1038/35015694) / Nature by D Eisenberg (2000)
Marcotte EM: Computational genetics: finding protein function by nonhomology methods. Curr Opin Struct Biol. 2000, 10: 359-365. 10.1016/S0959-440X(00)00097-X. (10.1016/S0959-440X(00)00097-X) / Curr Opin Struct Biol by EM Marcotte (2000)
Pellegrini M: Computational methods for protein functional analysis. Curr Opin Chem Biol. 2001, 5: 46-50. 10.1016/S1367-5931(00)00165-4. (10.1016/S1367-5931(00)00165-4) / Curr Opin Chem Biol by M Pellegrini (2001)
Jenssen TK, Laegreid A, Komorowski J, Hovig E: A literature network of human genes for high-throughput analysis of gene expression. Nat Genet. 2001, 28: 21-28. 10.1038/88213. (10.1038/88213) / Nat Genet by TK Jenssen (2001)
Mellor JC, Yanai I, Clodfelter KH, Mintseris J, DeLisi C: Predictome: a database of putative functional links between proteins. Nucleic Acids Res. 2002, 30: 306-309. 10.1093/nar/30.1.306. (10.1093/nar/30.1.306) / Nucleic Acids Res by JC Mellor (2002)
von Mering C, Huynen M, Jaeggi D, Schmidt S, Bork P, Snel B: String: a database of predicted functional associations between proteins. Nucleic Acids Res. 2003, 31: 258-261. 10.1093/nar/gkg034. (10.1093/nar/gkg034) / Nucleic Acids Res by C von Mering (2003)
Pellegrini M, Marcotte EM, Thompson MJ, Eisenberg D, Yeates TO: Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. Proc Natl Acad Sci USA. 1999, 96: 4285-4288. 10.1073/pnas.96.8.4285. (10.1073/pnas.96.8.4285) / Proc Natl Acad Sci USA by M Pellegrini (1999)
Huynen MA, Bork P: Measuring genome evolution. Proc Natl Acad Sci USA. 1998, 95: 5849-5856. 10.1073/pnas.95.11.5849. (10.1073/pnas.95.11.5849) / Proc Natl Acad Sci USA by MA Huynen (1998)
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acid Res. 1997, 25: 3389-3402. 10.1093/nar/25.17.3389. (10.1093/nar/25.17.3389) / Nucleic Acid Res by SF Altschul (1997)
Wu J, Kasif S, DeLisi C: Identification of functional links between genes using phylogenetic profiles. Bioinformatics. 2003, 19: 1524-1530. 10.1093/bioinformatics/btg187. (10.1093/bioinformatics/btg187) / Bioinformatics by J Wu (2003)
Ermolaeva MD, White O, Salzberg SL: Prediction of operons in microbial genomes. Nucleic Acids Res. 2001, 29: 1216-1221. 10.1093/nar/29.5.1216. (10.1093/nar/29.5.1216) / Nucleic Acids Res by MD Ermolaeva (2001)
Moreno-Hagelsieb G, Collado-Vides J: A powerful non-homology method for the prediction of operons in prokaryotes. Bioinformatics. 2002, 18 (Suppl 1): S329-S336. (10.1093/bioinformatics/18.suppl_1.S329) / Bioinformatics by G Moreno-Hagelsieb (2002)
Strong M, Mallick P, Pellegrini M, Thompson MJ, Eisenberg D: Inference of protein function and protein linkages in Mycobacterium tuberculosis based on prokaryotic genome organization: a combined computational approach. Genome Biol. 2003, 4: R59-10.1186/gb-2003-4-9-r59. (10.1186/gb-2003-4-9-r59) / Genome Biol by M Strong (2003)
Overbeek R, Fonstein M, D'Souza M, Pusch GD, Maltsev N: Use of contiguity on the chromosome to predict functional coupling. In Silico Biol. 1999, 1: 93-108. / In Silico Biol by R Overbeek (1999)
Overbeek R, Fonstein M, D'Souza M, Pusch GD, Maltsev N: The use of gene clusters to infer functional coupling. Proc Natl Acad Sci USA. 1999, 96: 2896-2901. 10.1073/pnas.96.6.2896. (10.1073/pnas.96.6.2896) / Proc Natl Acad Sci USA by R Overbeek (1999)
Dandekar T, Snel B, Huygen M, Bork P: Conservation of gene order: a fingerprint of proteins that physically interact. Trends Biochem Sci. 1998, 23: 324-328. 10.1016/S0968-0004(98)01274-2. (10.1016/S0968-0004(98)01274-2) / Trends Biochem Sci by T Dandekar (1998)
Marcotte EM, Pellegrini M, Ng HL, Rice DW, Yeates TO, Eisenberg D: Detecting protein function and protein-protein interactions from genome sequences. Science. 1999, 285: 751-753. 10.1126/science.285.5428.751. (10.1126/science.285.5428.751) / Science by EM Marcotte (1999)
Enright AJ, Ilioupolos I, Kyrpides NC, Ouzounis CA: Protein interaction maps for complete genomes based on gene fusion events. Nature. 1999, 402: 86-90. (10.1038/47056) / Nature by AJ Enright (1999)
Marcotte CJV, Marcotte EM: Predicting functional linkages from gene fusions with confidence. Appl Bioinformatics. 2002, 1: 93-100. / Appl Bioinformatics by CJV Marcotte (2002)
NCBI PubMed Database. [http://www.ncbi.nih.gov/PubMed]
NCBI Genbank Protein Annotation. [ftp://ftp.ncbi.nih.gov/genbank/genomes]
Tatusov RL, Koonin EV, Lipman DJ: A genomic perspective on protein families. Science. 1997, 278: 631-637. 10.1126/science.278.5338.631. (10.1126/science.278.5338.631) / Science by RL Tatusov (1997)
The Proteome Navigator and Prolinks Database. [http://169.232.137.207/cgi-dev/functionator/pronav]
Marcotte EM, Pellegrini M, Thompson MJ, Yeates TO, Eisenberg D: A combined algorithm for genome-wide prediction of protein function. Nature. 1999, 402: 83-86. 10.1038/47048. (10.1038/47048) / Nature by EM Marcotte (1999)
Huynen M, Snel B, Lathe W, Bork P: Predicting protein function by genomic context: quantitative evaluation and qualitative inferences. Genome Res. 2000, 10: 1204-1210. 10.1101/gr.10.8.1204. (10.1101/gr.10.8.1204) / Genome Res by M Huynen (2000)
Pellegrini M, Thompson M, Fierro J, Bowers PM: Computational method to assign microbial genes to pathways. J Cell Biochem Suppl. 2001, Suppl 37: 106-109. 10.1002/jcb.10071. (10.1002/jcb.10071) / J Cell Biochem Suppl by M Pellegrini (2001)
Karp PD, Riley M, Saier M, Paulsen IT, Collado-Vides J, Paley SM, Pellegrini-Toole A, Bonavides C, Gama-Castro S: The EcoCyc Database. Nucleic Acids Res. 2002, 30: 56-58. 10.1093/nar/30.1.56. (10.1093/nar/30.1.56) / Nucleic Acids Res by PD Karp (2002)
Xenarios I, Salwinski L, Duan XJ, Higney P, Kim SM, Eisenberg D: DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions. Nucleic Acids Res. 2002, 30: 303-305. 10.1093/nar/30.1.303. (10.1093/nar/30.1.303) / Nucleic Acids Res by I Xenarios (2002)
Matthews LR, Vaglio P, Reboul J, Ge H, Davis BP, Garrels J, Vincent S, Vidal M: Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs". Genome Res. 2001, 11: 2120-2126. 10.1101/gr.205301. (10.1101/gr.205301) / Genome Res by LR Matthews (2001)
Deane CM, Salwinski L, Xenarios I, Eisenberg D: Protein interactions: two methods for assessment of the reliability of high-throughput observations. Mol Cell Proteomics. 2002, 1: 349-356. 10.1074/mcp.M100037-MCP200. (10.1074/mcp.M100037-MCP200) / Mol Cell Proteomics by CM Deane (2002)

Dates

Type	When
Created	21 years, 4 months ago (April 17, 2004, 2:22 a.m.)
Deposited	1 year, 4 months ago (April 25, 2024, 12:15 p.m.)
Indexed	3 months, 4 weeks ago (April 30, 2025, 9:34 p.m.)
Issued	21 years, 4 months ago (April 16, 2004)
Published	21 years, 4 months ago (April 16, 2004)
Published Online	21 years, 4 months ago (April 16, 2004)

Funders 0

None

BibTeX

@article{Bowers_2004, title={Prolinks: a database of protein functional linkages derived from coevolution}, volume={5}, ISSN={1474-760X}, url={http://dx.doi.org/10.1186/gb-2004-5-5-r35}, DOI={10.1186/gb-2004-5-5-r35}, number={5}, journal={Genome Biology}, publisher={Springer Science and Business Media LLC}, author={Bowers, Peter M and Pellegrini, Matteo and Thompson, Mike J and Fierro, Joe and Yeates, Todd O and Eisenberg, David}, year={2004}, month=apr }

JSON

{
  "indexed": {
    "date-parts": [
      [
        2025,
        5,
        1
      ]
    ],
    "date-time": "2025-05-01T01:34:12Z",
    "timestamp": 1746063252862
  },
  "reference-count": 30,
  "publisher": "Springer Science and Business Media LLC",
  "issue": "5",
  "license": [
    {
      "start": {
        "date-parts": [
          [
            2004,
            4,
            16
          ]
        ],
        "date-time": "2004-04-16T00:00:00Z",
        "timestamp": 1082073600000
      },
      "content-version": "tdm",
      "delay-in-days": 0,
      "URL": "https://www.springernature.com/gp/researchers/text-and-data-mining"
    },
    {
      "start": {
        "date-parts": [
          [
            2004,
            4,
            16
          ]
        ],
        "date-time": "2004-04-16T00:00:00Z",
        "timestamp": 1082073600000
      },
      "content-version": "vor",
      "delay-in-days": 0,
      "URL": "https://www.springernature.com/gp/researchers/text-and-data-mining"
    }
  ],
  "content-domain": {
    "domain": [
      "link.springer.com"
    ],
    "crossmark-restriction": false
  },
  "DOI": "10.1186/gb-2004-5-5-r35",
  "type": "journal-article",
  "created": {
    "date-parts": [
      [
        2004,
        4,
        17
      ]
    ],
    "date-time": "2004-04-17T06:22:48Z",
    "timestamp": 1082182968000
  },
  "update-policy": "http://dx.doi.org/10.1007/springer_crossmark_policy",
  "source": "Crossref",
  "is-referenced-by-count": 228,
  "title": "Prolinks: a database of protein functional linkages derived from coevolution",
  "prefix": "10.1186",
  "volume": "5",
  "author": [
    {
      "given": "Peter M",
      "family": "Bowers",
      "sequence": "first",
      "affiliation": []
    },
    {
      "given": "Matteo",
      "family": "Pellegrini",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Mike J",
      "family": "Thompson",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Joe",
      "family": "Fierro",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Todd O",
      "family": "Yeates",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "David",
      "family": "Eisenberg",
      "sequence": "additional",
      "affiliation": []
    }
  ],
  "member": "297",
  "published-online": {
    "date-parts": [
      [
        2004,
        4,
        16
      ]
    ]
  },
  "reference": [
    {
      "key": "839_CR1",
      "doi-asserted-by": "publisher",
      "first-page": "823",
      "DOI": "10.1038/35015694",
      "volume": "405",
      "author": "D Eisenberg",
      "year": "2000",
      "unstructured": "Eisenberg D, Marcotte EM, Xenarios I, Yeates TO: Protein function in the post-genomic era. Nature. 2000, 405: 823-826. 10.1038/35015694.",
      "journal-title": "Nature"
    },
    {
      "key": "839_CR2",
      "doi-asserted-by": "publisher",
      "first-page": "359",
      "DOI": "10.1016/S0959-440X(00)00097-X",
      "volume": "10",
      "author": "EM Marcotte",
      "year": "2000",
      "unstructured": "Marcotte EM: Computational genetics: finding protein function by nonhomology methods. Curr Opin Struct Biol. 2000, 10: 359-365. 10.1016/S0959-440X(00)00097-X.",
      "journal-title": "Curr Opin Struct Biol"
    },
    {
      "key": "839_CR3",
      "doi-asserted-by": "publisher",
      "first-page": "46",
      "DOI": "10.1016/S1367-5931(00)00165-4",
      "volume": "5",
      "author": "M Pellegrini",
      "year": "2001",
      "unstructured": "Pellegrini M: Computational methods for protein functional analysis. Curr Opin Chem Biol. 2001, 5: 46-50. 10.1016/S1367-5931(00)00165-4.",
      "journal-title": "Curr Opin Chem Biol"
    },
    {
      "key": "839_CR4",
      "doi-asserted-by": "publisher",
      "first-page": "21",
      "DOI": "10.1038/88213",
      "volume": "28",
      "author": "TK Jenssen",
      "year": "2001",
      "unstructured": "Jenssen TK, Laegreid A, Komorowski J, Hovig E: A literature network of human genes for high-throughput analysis of gene expression. Nat Genet. 2001, 28: 21-28. 10.1038/88213.",
      "journal-title": "Nat Genet"
    },
    {
      "key": "839_CR5",
      "doi-asserted-by": "publisher",
      "first-page": "306",
      "DOI": "10.1093/nar/30.1.306",
      "volume": "30",
      "author": "JC Mellor",
      "year": "2002",
      "unstructured": "Mellor JC, Yanai I, Clodfelter KH, Mintseris J, DeLisi C: Predictome: a database of putative functional links between proteins. Nucleic Acids Res. 2002, 30: 306-309. 10.1093/nar/30.1.306.",
      "journal-title": "Nucleic Acids Res"
    },
    {
      "key": "839_CR6",
      "doi-asserted-by": "publisher",
      "first-page": "258",
      "DOI": "10.1093/nar/gkg034",
      "volume": "31",
      "author": "C von Mering",
      "year": "2003",
      "unstructured": "von Mering C, Huynen M, Jaeggi D, Schmidt S, Bork P, Snel B: String: a database of predicted functional associations between proteins. Nucleic Acids Res. 2003, 31: 258-261. 10.1093/nar/gkg034.",
      "journal-title": "Nucleic Acids Res"
    },
    {
      "key": "839_CR7",
      "doi-asserted-by": "publisher",
      "first-page": "4285",
      "DOI": "10.1073/pnas.96.8.4285",
      "volume": "96",
      "author": "M Pellegrini",
      "year": "1999",
      "unstructured": "Pellegrini M, Marcotte EM, Thompson MJ, Eisenberg D, Yeates TO: Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. Proc Natl Acad Sci USA. 1999, 96: 4285-4288. 10.1073/pnas.96.8.4285.",
      "journal-title": "Proc Natl Acad Sci USA"
    },
    {
      "key": "839_CR8",
      "doi-asserted-by": "publisher",
      "first-page": "5849",
      "DOI": "10.1073/pnas.95.11.5849",
      "volume": "95",
      "author": "MA Huynen",
      "year": "1998",
      "unstructured": "Huynen MA, Bork P: Measuring genome evolution. Proc Natl Acad Sci USA. 1998, 95: 5849-5856. 10.1073/pnas.95.11.5849.",
      "journal-title": "Proc Natl Acad Sci USA"
    },
    {
      "key": "839_CR9",
      "doi-asserted-by": "publisher",
      "first-page": "3389",
      "DOI": "10.1093/nar/25.17.3389",
      "volume": "25",
      "author": "SF Altschul",
      "year": "1997",
      "unstructured": "Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acid Res. 1997, 25: 3389-3402. 10.1093/nar/25.17.3389.",
      "journal-title": "Nucleic Acid Res"
    },
    {
      "key": "839_CR10",
      "doi-asserted-by": "publisher",
      "first-page": "1524",
      "DOI": "10.1093/bioinformatics/btg187",
      "volume": "19",
      "author": "J Wu",
      "year": "2003",
      "unstructured": "Wu J, Kasif S, DeLisi C: Identification of functional links between genes using phylogenetic profiles. Bioinformatics. 2003, 19: 1524-1530. 10.1093/bioinformatics/btg187.",
      "journal-title": "Bioinformatics"
    },
    {
      "key": "839_CR11",
      "doi-asserted-by": "publisher",
      "first-page": "1216",
      "DOI": "10.1093/nar/29.5.1216",
      "volume": "29",
      "author": "MD Ermolaeva",
      "year": "2001",
      "unstructured": "Ermolaeva MD, White O, Salzberg SL: Prediction of operons in microbial genomes. Nucleic Acids Res. 2001, 29: 1216-1221. 10.1093/nar/29.5.1216.",
      "journal-title": "Nucleic Acids Res"
    },
    {
      "issue": "Suppl 1",
      "key": "839_CR12",
      "doi-asserted-by": "publisher",
      "first-page": "S329",
      "DOI": "10.1093/bioinformatics/18.suppl_1.S329",
      "volume": "18",
      "author": "G Moreno-Hagelsieb",
      "year": "2002",
      "unstructured": "Moreno-Hagelsieb G, Collado-Vides J: A powerful non-homology method for the prediction of operons in prokaryotes. Bioinformatics. 2002, 18 (Suppl 1): S329-S336.",
      "journal-title": "Bioinformatics"
    },
    {
      "key": "839_CR13",
      "doi-asserted-by": "publisher",
      "first-page": "R59",
      "DOI": "10.1186/gb-2003-4-9-r59",
      "volume": "4",
      "author": "M Strong",
      "year": "2003",
      "unstructured": "Strong M, Mallick P, Pellegrini M, Thompson MJ, Eisenberg D: Inference of protein function and protein linkages in Mycobacterium tuberculosis based on prokaryotic genome organization: a combined computational approach. Genome Biol. 2003, 4: R59-10.1186/gb-2003-4-9-r59.",
      "journal-title": "Genome Biol"
    },
    {
      "key": "839_CR14",
      "first-page": "93",
      "volume": "1",
      "author": "R Overbeek",
      "year": "1999",
      "unstructured": "Overbeek R, Fonstein M, D'Souza M, Pusch GD, Maltsev N: Use of contiguity on the chromosome to predict functional coupling. In Silico Biol. 1999, 1: 93-108.",
      "journal-title": "In Silico Biol"
    },
    {
      "key": "839_CR15",
      "doi-asserted-by": "publisher",
      "first-page": "2896",
      "DOI": "10.1073/pnas.96.6.2896",
      "volume": "96",
      "author": "R Overbeek",
      "year": "1999",
      "unstructured": "Overbeek R, Fonstein M, D'Souza M, Pusch GD, Maltsev N: The use of gene clusters to infer functional coupling. Proc Natl Acad Sci USA. 1999, 96: 2896-2901. 10.1073/pnas.96.6.2896.",
      "journal-title": "Proc Natl Acad Sci USA"
    },
    {
      "key": "839_CR16",
      "doi-asserted-by": "publisher",
      "first-page": "324",
      "DOI": "10.1016/S0968-0004(98)01274-2",
      "volume": "23",
      "author": "T Dandekar",
      "year": "1998",
      "unstructured": "Dandekar T, Snel B, Huygen M, Bork P: Conservation of gene order: a fingerprint of proteins that physically interact. Trends Biochem Sci. 1998, 23: 324-328. 10.1016/S0968-0004(98)01274-2.",
      "journal-title": "Trends Biochem Sci"
    },
    {
      "key": "839_CR17",
      "doi-asserted-by": "publisher",
      "first-page": "751",
      "DOI": "10.1126/science.285.5428.751",
      "volume": "285",
      "author": "EM Marcotte",
      "year": "1999",
      "unstructured": "Marcotte EM, Pellegrini M, Ng HL, Rice DW, Yeates TO, Eisenberg D: Detecting protein function and protein-protein interactions from genome sequences. Science. 1999, 285: 751-753. 10.1126/science.285.5428.751.",
      "journal-title": "Science"
    },
    {
      "key": "839_CR18",
      "doi-asserted-by": "publisher",
      "first-page": "86",
      "DOI": "10.1038/47056",
      "volume": "402",
      "author": "AJ Enright",
      "year": "1999",
      "unstructured": "Enright AJ, Ilioupolos I, Kyrpides NC, Ouzounis CA: Protein interaction maps for complete genomes based on gene fusion events. Nature. 1999, 402: 86-90.",
      "journal-title": "Nature"
    },
    {
      "key": "839_CR19",
      "first-page": "93",
      "volume": "1",
      "author": "CJV Marcotte",
      "year": "2002",
      "unstructured": "Marcotte CJV, Marcotte EM: Predicting functional linkages from gene fusions with confidence. Appl Bioinformatics. 2002, 1: 93-100.",
      "journal-title": "Appl Bioinformatics"
    },
    {
      "key": "839_CR20",
      "unstructured": "NCBI PubMed Database. [http://www.ncbi.nih.gov/PubMed]"
    },
    {
      "key": "839_CR21",
      "unstructured": "NCBI Genbank Protein Annotation. [ftp://ftp.ncbi.nih.gov/genbank/genomes]"
    },
    {
      "key": "839_CR22",
      "doi-asserted-by": "publisher",
      "first-page": "631",
      "DOI": "10.1126/science.278.5338.631",
      "volume": "278",
      "author": "RL Tatusov",
      "year": "1997",
      "unstructured": "Tatusov RL, Koonin EV, Lipman DJ: A genomic perspective on protein families. Science. 1997, 278: 631-637. 10.1126/science.278.5338.631.",
      "journal-title": "Science"
    },
    {
      "key": "839_CR23",
      "unstructured": "The Proteome Navigator and Prolinks Database. [http://169.232.137.207/cgi-dev/functionator/pronav]"
    },
    {
      "key": "839_CR24",
      "doi-asserted-by": "publisher",
      "first-page": "83",
      "DOI": "10.1038/47048",
      "volume": "402",
      "author": "EM Marcotte",
      "year": "1999",
      "unstructured": "Marcotte EM, Pellegrini M, Thompson MJ, Yeates TO, Eisenberg D: A combined algorithm for genome-wide prediction of protein function. Nature. 1999, 402: 83-86. 10.1038/47048.",
      "journal-title": "Nature"
    },
    {
      "key": "839_CR25",
      "doi-asserted-by": "publisher",
      "first-page": "1204",
      "DOI": "10.1101/gr.10.8.1204",
      "volume": "10",
      "author": "M Huynen",
      "year": "2000",
      "unstructured": "Huynen M, Snel B, Lathe W, Bork P: Predicting protein function by genomic context: quantitative evaluation and qualitative inferences. Genome Res. 2000, 10: 1204-1210. 10.1101/gr.10.8.1204.",
      "journal-title": "Genome Res"
    },
    {
      "key": "839_CR26",
      "doi-asserted-by": "publisher",
      "first-page": "106",
      "DOI": "10.1002/jcb.10071",
      "volume": "Suppl 37",
      "author": "M Pellegrini",
      "year": "2001",
      "unstructured": "Pellegrini M, Thompson M, Fierro J, Bowers PM: Computational method to assign microbial genes to pathways. J Cell Biochem Suppl. 2001, Suppl 37: 106-109. 10.1002/jcb.10071.",
      "journal-title": "J Cell Biochem Suppl"
    },
    {
      "key": "839_CR27",
      "doi-asserted-by": "publisher",
      "first-page": "56",
      "DOI": "10.1093/nar/30.1.56",
      "volume": "30",
      "author": "PD Karp",
      "year": "2002",
      "unstructured": "Karp PD, Riley M, Saier M, Paulsen IT, Collado-Vides J, Paley SM, Pellegrini-Toole A, Bonavides C, Gama-Castro S: The EcoCyc Database. Nucleic Acids Res. 2002, 30: 56-58. 10.1093/nar/30.1.56.",
      "journal-title": "Nucleic Acids Res"
    },
    {
      "key": "839_CR28",
      "doi-asserted-by": "publisher",
      "first-page": "303",
      "DOI": "10.1093/nar/30.1.303",
      "volume": "30",
      "author": "I Xenarios",
      "year": "2002",
      "unstructured": "Xenarios I, Salwinski L, Duan XJ, Higney P, Kim SM, Eisenberg D: DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions. Nucleic Acids Res. 2002, 30: 303-305. 10.1093/nar/30.1.303.",
      "journal-title": "Nucleic Acids Res"
    },
    {
      "key": "839_CR29",
      "doi-asserted-by": "publisher",
      "first-page": "2120",
      "DOI": "10.1101/gr.205301",
      "volume": "11",
      "author": "LR Matthews",
      "year": "2001",
      "unstructured": "Matthews LR, Vaglio P, Reboul J, Ge H, Davis BP, Garrels J, Vincent S, Vidal M: Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or \"interologs\". Genome Res. 2001, 11: 2120-2126. 10.1101/gr.205301.",
      "journal-title": "Genome Res"
    },
    {
      "key": "839_CR30",
      "doi-asserted-by": "publisher",
      "first-page": "349",
      "DOI": "10.1074/mcp.M100037-MCP200",
      "volume": "1",
      "author": "CM Deane",
      "year": "2002",
      "unstructured": "Deane CM, Salwinski L, Xenarios I, Eisenberg D: Protein interactions: two methods for assessment of the reliability of high-throughput observations. Mol Cell Proteomics. 2002, 1: 349-356. 10.1074/mcp.M100037-MCP200.",
      "journal-title": "Mol Cell Proteomics"
    }
  ],
  "container-title": "Genome Biology",
  "original-title": [],
  "language": "en",
  "link": [
    {
      "URL": "https://link.springer.com/content/pdf/10.1186/gb-2004-5-5-r35.pdf",
      "content-type": "application/pdf",
      "content-version": "vor",
      "intended-application": "text-mining"
    },
    {
      "URL": "https://link.springer.com/article/10.1186/gb-2004-5-5-r35/fulltext.html",
      "content-type": "text/html",
      "content-version": "vor",
      "intended-application": "text-mining"
    },
    {
      "URL": "https://link.springer.com/content/pdf/10.1186/gb-2004-5-5-r35.pdf",
      "content-type": "application/pdf",
      "content-version": "vor",
      "intended-application": "similarity-checking"
    }
  ],
  "deposited": {
    "date-parts": [
      [
        2024,
        4,
        25
      ]
    ],
    "date-time": "2024-04-25T16:15:00Z",
    "timestamp": 1714061700000
  },
  "score": 1,
  "resource": {
    "primary": {
      "URL": "https://genomebiology.biomedcentral.com/articles/10.1186/gb-2004-5-5-r35"
    }
  },
  "subtitle": [],
  "short-title": [],
  "issued": {
    "date-parts": [
      [
        2004,
        4,
        16
      ]
    ]
  },
  "references-count": 30,
  "journal-issue": {
    "issue": "5",
    "published-online": {
      "date-parts": [
        [
          2004,
          5
        ]
      ]
    }
  },
  "alternative-id": [
    "839"
  ],
  "URL": "http://dx.doi.org/10.1186/gb-2004-5-5-r35",
  "relation": {},
  "ISSN": [
    "1474-760X"
  ],
  "subject": [],
  "container-title-short": "Genome Biol",
  "published": {
    "date-parts": [
      [
        2004,
        4,
        16
      ]
    ]
  },
  "assertion": [
    {
      "value": "7 January 2004",
      "order": 1,
      "name": "received",
      "label": "Received",
      "group": {
        "name": "ArticleHistory",
        "label": "Article History"
      }
    },
    {
      "value": "23 February 2004",
      "order": 2,
      "name": "revised",
      "label": "Revised",
      "group": {
        "name": "ArticleHistory",
        "label": "Article History"
      }
    },
    {
      "value": "4 March 2004",
      "order": 3,
      "name": "accepted",
      "label": "Accepted",
      "group": {
        "name": "ArticleHistory",
        "label": "Article History"
      }
    },
    {
      "value": "16 April 2004",
      "order": 4,
      "name": "first_online",
      "label": "First Online",
      "group": {
        "name": "ArticleHistory",
        "label": "Article History"
      }
    },
    {
      "value": "This content has been made available to all.",
      "name": "free",
      "label": "Free to read"
    }
  ],
  "article-number": "R35"
}