DOI: 10.1186/gb-2001-2-9-research0034. Functional associations of proteins in entire genomes by means of exhaustive detection of gene fusions

Functional associations of proteins in entire genomes by means of exhaustive detection of gene fusions

10.1186/gb-2001-2-9-research0034

Crossref journal-article

Springer Science and Business Media LLC

Genome Biology (297)

Bibliography

Enright, A. J., & Ouzounis, C. A. (2001). Functional associations of proteins in entire genomes by means of exhaustive detection of gene fusions. Genome Biology, 2(9).

Authors 2

Anton J Enright (first)
Christos A Ouzounis (additional)

References 23 Referenced 87

Enright AJ, Iliopoulos I, Kyrpides NC, Ouzounis CA: Protein interaction maps for complete genomes based on gene fusion events. Nature. 1999, 402: 86-90. 10.1038/47056. (10.1038/47056) / Nature by AJ Enright (1999)
Marcotte EM, Pellegrini M, Thompson MJ, Yeates TO, Eisenberg D: A combined algorithm for genome-wide prediction of protein function. Nature. 1999, 402: 83-86. 10.1038/47048. (10.1038/47048) / Nature by EM Marcotte (1999)
Marcotte EM, Pellegrini M, Ng H-L, Rice DW, Yeates TO, Eisenberg D: Detecting protein function and protein-protein interactions from genome sequences. Science. 1999, 285: 751-753. 10.1006/bbrc.2001.5221. (10.1126/science.285.5428.751) / Science by EM Marcotte (1999)
Sali A: Functional links between proteins. Nature. 1999, 402: 23-26. 10.1016/S0027-5107(97)00278-9. (10.1038/46915) / Nature by A Sali (1999)
Doolittle RF: Do you dig my groove?. Nat Genet. 1999, 23: 6-8. 10.1038/12597. (10.1038/12597) / Nat Genet by RF Doolittle (1999)
Overbeek R, Fonstein M, D'Souza M, Pusch GD, Maltsev N: The use of gene clusters to infer functional coupling. Proc Natl Acad Sci USA. 1999, 96: 2896-2901. 10.1073/pnas.96.6.2896. (10.1073/pnas.96.6.2896) / Proc Natl Acad Sci USA by R Overbeek (1999)
Ito T, Tashiro K, Muta S, Ozawa R, Chiba T, Nishizawa M, Yamamoto K, Kuhara S, Sakaki Y: Toward a protein-protein interaction map of the budding yeast: a comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins. Proc Natl Acad Sci USA. 2000, 97: 1143-1147. 10.1073/pnas.97.3.1143. (10.1073/pnas.97.3.1143) / Proc Natl Acad Sci USA by T Ito (2000)
Enright AJ, Ouzounis CA: GeneRAGE: a robust algorithm for sequence clustering and domain detection. Bioinformatics. 2000, 16: 451-457. 10.1093/bioinformatics/16.5.451. (10.1093/bioinformatics/16.5.451) / Bioinformatics by AJ Enright (2000)
DeRisi JL, Iyer VR, Brown PO: Exploring the metabolic and genetic control of gene expression on a genomic scale. Science. 1997, 278: 680-686. 10.1126/science.278.5338.680. (10.1126/science.278.5338.680) / Science by JL DeRisi (1997)
Uetz P, Giot L, Cagney G, Mansfield TA, Judson RS, Knight JR, Lockshon D, Narayan V, Srinivasan M, Pochart P, et al: A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature. 2000, 403: 623-627. 10.1038/35001009. (10.1038/35001009) / Nature by P Uetz (2000)
Lim AL, Powers-Lee SG: Requirement for the carboxyl-terminal domain of Saccharomyces cerevisiae carbamoyl-phosphate synthetase. J Biol Chem. 1996, 271: 11400-11409. 10.1074/jbc.271.19.11400. (10.1074/jbc.271.50.31839) / J Biol Chem by AL Lim (1996)
Blaiseau PL, Isnard AD, Surdin-Kerjan Y, Thomas D: Met31p and Met32p, two related zinc finger proteins, are involved in transcriptional regulation of yeast sulfur amino acid metabolism. Mol Cell Biol. 1997, 17: 3640-3648. (10.1128/MCB.17.7.3640) / Mol Cell Biol by PL Blaiseau (1997)
Cho RJ, Campbell MJ, Winzeler EA, Steinmetz L, Conway A, Wodicka L, Wolfsberg TG, Gabrielian AE, Landsman D, Lockhart DJ, Davis RW: A genome-wide transcriptional analysis of the mitotic cell cycle. Mol Cell. 1998, 2: 65-73. (10.1016/S1097-2765(00)80114-8) / Mol Cell by RJ Cho (1998)
Chu S, DeRisi J, Eisen M, Mulholland J, Botstein D, Brown PO, Herskowitz I: The transcriptional program of sporulation in budding yeast [Erratum: Science 282:1421]. Science. 1998, 282: 699-705. 10.1006/jmbi.1998.2134. (10.1126/science.282.5389.699) / Science by S Chu (1998)
Moskovitz J, Berlett BS, Poston JM, Stadtman ER: The yeast peptide-methionine sulfoxide reductase functions as an antioxidant in vivo. Proc Natl Acad Sci USA. 1997, 94: 9585-9589. 10.1073/pnas.94.18.9585. (10.1073/pnas.94.18.9585) / Proc Natl Acad Sci USA by J Moskovitz (1997)
Lescure A, Gautheret D, Carbon P, Krol A: Novel selenoproteins identified in silico and in vivo by using a conserved RNA structural motif. J Biol Chem. 1999, 274: 38147-38154. 10.1074/jbc.274.53.38147. (10.1074/jbc.274.53.38147) / J Biol Chem by A Lescure (1999)
Helliwell SB, Howald I, Barbet N, Hall MN: TOR2 is part of two related signaling pathways coordinating cell growth in Saccharomyces cerevisiae. Genetics. 1998, 148: 99-112. (10.1093/genetics/148.1.99) / Genetics by SB Helliwell (1998)
Stoldt V, Rademacher F, Kehren V, Ernst JF, Pearce DA, Sherman F: The Cct eukaryotic chaperonin subunits of Saccharomyces cerevisiae and other yeasts. Yeast. 1996, 12: 523-529. 10.1002/(SICI)1097-0061(199605)12:6<523::AID-YEA962>3.3.CO;2-3. (10.1002/(SICI)1097-0061(199605)12:6<523::AID-YEA962>3.0.CO;2-C) / Yeast by V Stoldt (1996)
Kyrpides NC: Genomes OnLine Database (GOLD 1.0): a monitor of complete and ongoing genome projects worldwide. Bioinformatics. 1999, 15: 773-774. 10.1093/bioinformatics/15.9.773. (10.1093/bioinformatics/15.9.773) / Bioinformatics by NC Kyrpides (1999)
Promponas VJ, Enright AJ, Tsoka S, Kreil DP, Leroy C, Hamodrakas S, Sander C, Ouzounis CA: CAST: an iterative algorithm for the complexity analysis of sequence tracts. Complexity analysis of sequence tracts. Bioinformatics. 2000, 16: 915-922. 10.1093/bioinformatics/16.10.915. (10.1093/bioinformatics/16.10.915) / Bioinformatics by VJ Promponas (2000)
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl Acids Res. 1997, 25: 3389-3402. 10.1093/nar/25.17.3389. (10.1093/nar/25.17.3389) / Nucl Acids Res by SF Altschul (1997)
Snel B, Bork P, Huynen MA: Genome phylogeny based on gene content. Nature Genet. 1999, 21: 108-110. 10.1038/5052. (10.1038/5052) / Nature Genet by B Snel (1999)
Computational Genomics Group. [http://www.ebi.ac.uk/research/cgg/diffuse]

Dates

Type	When
Created	22 years, 10 months ago (Sept. 26, 2002, 8:07 a.m.)
Deposited	1 year, 3 months ago (April 25, 2024, 12:18 p.m.)
Indexed	3 months, 2 weeks ago (May 8, 2025, 8:42 a.m.)
Issued	23 years, 11 months ago (Aug. 28, 2001)
Published	23 years, 11 months ago (Aug. 28, 2001)
Published Online	23 years, 11 months ago (Aug. 28, 2001)

Funders 0

None

BibTeX

@article{Enright_2001, title={Functional associations of proteins in entire genomes by means of exhaustive detection of gene fusions}, volume={2}, ISSN={1474-760X}, url={http://dx.doi.org/10.1186/gb-2001-2-9-research0034}, DOI={10.1186/gb-2001-2-9-research0034}, number={9}, journal={Genome Biology}, publisher={Springer Science and Business Media LLC}, author={Enright, Anton J and Ouzounis, Christos A}, year={2001}, month=aug }

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}