Crossref journal-article
Springer Science and Business Media LLC
BMC Microbiology (297)
Abstract

Abstract Plant diseases caused by fungi and oomycetes result in significant economic losses every year. Although phylogenetically distant, the infection processes by these organisms share many common features. These include dispersal of an infectious particle, host adhesion, recognition, penetration, invasive growth, and lesion development. Previously, many of these common processes did not have corresponding Gene Ontology (GO) terms. For example, no GO terms existed to describe processes related to the appressorium, an important structure for infection by many fungi and oomycetes. In this mini-review, we identify common features of the pathogenic processes of fungi and oomycetes and create a pathogenesis model using 256 newly developed and 38 extant GO terms, with an emphasis on the appressorium and signal transduction. This set of standardized GO terms provides a solid base to further compare and contrast the molecular underpinnings of fungal and oomycete pathogenesis.

Bibliography

Meng, S., Torto-Alalibo, T., Chibucos, M. C., Tyler, B. M., & Dean, R. A. (2009). Common processes in pathogenesis by fungal and oomycete plant pathogens, described with Gene Ontology terms. BMC Microbiology, 9(S1).

Authors 5
  1. Shaowu Meng (first)
  2. Trudy Torto-Alalibo (additional)
  3. Marcus C Chibucos (additional)
  4. Brett M Tyler (additional)
  5. Ralph A Dean (additional)
References 46 Referenced 38
  1. Money NP: Why oomycetes have not stopped being fungi. Mycology Research. 1998, 102 (6): 767-768. 10.1017/S095375629700556X. (10.1017/S095375629700556X) / Mycology Research by NP Money (1998)
  2. Latijnhouwers M, Wit PJGMD, Govers F: Oomycetes and fungi: similar weaponry to attack plants. Trends in Microbiology. 2003, 11 (10): 462-469. 10.1016/j.tim.2003.08.002. (10.1016/j.tim.2003.08.002) / Trends in Microbiology by M Latijnhouwers (2003)
  3. Epstein L, Nicholson RL: Adhesion and adhesives of fungi and oomycetes. Biological Adhesives. Edited by: Smith AM, Callow JA. 2006, Springer-Verlag Berlin Heidelberg / Biological Adhesives by L Epstein (2006)
  4. Soanes DM, Richards TA, Talbot NJ: Insights from sequencing fungal and oomycete genomes: what can we learn about plant disease and the evolution of pathogenicity?. The Plant Cell. 2007, 19: 3318-3326. 10.1105/tpc.107.056663. (10.1105/tpc.107.056663) / The Plant Cell by DM Soanes (2007)
  5. Agrios GN: Plant pathology. 2005, Elsevier Academic Press, London, UK, Fifth / Plant pathology by GN Agrios (2005)
  6. Colditz F, Krajinski F, Niehaus K: Plant proteomics upon fungal attack. Plant Proteomics. Edited by: Šamaj J, Thelen J. 2007, Springer / Plant Proteomics by F Colditz (2007)
  7. Ingold GT: Dispersal in Fungi. 1953, Clarendon Press, Oxford; Oxford University Press, New York / Dispersal in Fungi by GT Ingold (1953)
  8. Trail F: Fungal cannons: explosive spore discharge in the Ascomycota. FEMS Microbiol Lett. 2007, 276: 12-18. 10.1111/j.1574-6968.2007.00900.x. (10.1111/j.1574-6968.2007.00900.x) / FEMS Microbiol Lett by F Trail (2007)
  9. James TY, Letcher PM, Longcore JE, Mozley-Standridge SE, Porter D, Powell MJ, Griffith GW, Vilgalys R: A molecular phylogeny of the flagellated fungi (Chytridiomycota) and description of a new phylum (Blastocladiomycota). Mycologia. 2006, 98 (6): 860-871. 10.3852/mycologia.98.6.860. (10.3852/mycologia.98.6.860) / Mycologia by TY James (2006)
  10. Griffin DH: Fungal Physiology. 1996, Published by Wiley_Default / Fungal Physiology by DH Griffin (1996)
  11. Mitchell HJ, Hardham AR: Characterisation of the water expulsion vacuole in Phytophthora nicotianae zoospores. Protoplasma. 1999, 206: 118-130. 10.1007/BF01279258. (10.1007/BF01279258) / Protoplasma by HJ Mitchell (1999)
  12. Choi W, Dean RA: The adenylate cyclase gene MAC1 of Magnaporthe grisea controls appressorium formation and other aspects of growth and development. Plant Cell. 1997, 9 (11): 1973-1983. 10.1105/tpc.9.11.1973. (10.1105/tpc.9.11.1973) / Plant Cell by W Choi (1997)
  13. Hardham AR: The cell biology behind Phytophthora pathogenicity. Australasian Plant Pathology. 2001, 30: 91-98. 10.1071/AP01006. (10.1071/AP01006) / Australasian Plant Pathology by AR Hardham (2001)
  14. Veneault-Fourrey C, Barooah MK, Egan MJ, Talbot NJ: Autophagic fungal cell death is necessary for infection by the rice blast fungus. Science. 2006, 312 (5773): 580-583. 10.1126/science.1124550. (10.1126/science.1124550) / Science by C Veneault-Fourrey (2006)
  15. Talbot NJ: Fungal genomics goes industrial. Nature Biotechnology. 2007, 25 (5): 542-543. 10.1038/nbt0507-542. (10.1038/nbt0507-542) / Nature Biotechnology by NJ Talbot (2007)
  16. Grenville-Briggs LJ, Anderson VL, Fugelstad J, Avrova AO, Bouzenzana J, Williams A, Wawra S, Whisson SC, Birch PRJ, Bulone V, West PV: Cellulose synthesis in Phytophthora infestans is required for normal appressorium formation and successful infection of potato. The Plant Cell. 2008, 20: 720-738. 10.1105/tpc.107.052043. (10.1105/tpc.107.052043) / The Plant Cell by LJ Grenville-Briggs (2008)
  17. Onyile AB, Edwards HH, Gessner RV: Adhesive material of the hyphopodia of Buergenerula spartinae. Mycologia. 1982, 74 (5): 777-784. 10.2307/3792864. (10.2307/3792864) / Mycologia by AB Onyile (1982)
  18. Du M, Schard CL, Nuckles EM, Vaillancourt LJ: Using mating-type gene sequences for improved phylogenetic resolution of Collectotrichum species complexes. Mycologia. 2005, 97 (3): 641-658. 10.3852/mycologia.97.3.641. (10.3852/mycologia.97.3.641) / Mycologia by M Du (2005)
  19. Sukno SA, García VM, Shaw BD, Thon MR: Root infection and systemic colonization of maize by Colletotrichum graminicola. Applied and environmental microbiology. 2008, 74 (3): 823-832. 10.1128/AEM.01165-07. (10.1128/AEM.01165-07) / Applied and environmental microbiology by SA Sukno (2008)
  20. Heath MC, Heath IB: Ultrastructural changes associated with the haustorial mother cell ceptum during haustorium formation in Uromyces phaseoli var. vignae. Protoplasma. 1975, 84: 297-314. 10.1007/BF01279359. (10.1007/BF01279359) / Protoplasma by MC Heath (1975)
  21. Glidewell DC, Mims CW: Ultrastructure of the haustorial apparatus in the rust fungus Kunkelia nitens. Botanical Gazette. 1979, 140 (2): 148-152. 10.1086/337071. (10.1086/337071) / Botanical Gazette by DC Glidewell (1979)
  22. Mendgen K, Dressler E: Culturing Puccinia coronata on a cell monolayer of the Avena saliva coleoptile. Phytopath. 1983, 108: 226-234. 10.1111/j.1439-0434.1983.tb00583.x. (10.1111/j.1439-0434.1983.tb00583.x) / Phytopath by K Mendgen (1983)
  23. Wiethölter N, Horn S, Reisige K, Beike U, Moerschbacher BM: In vitro differentiation of haustorial mother cells of the wheat stem rust fungus, Puccinia graminis f. sp. tritici, triggered by the synergistic action of chemical and physical signals. Fungal Genetics and Biology. 2003, 38: 320-326. 10.1016/S1087-1845(02)00539-X. (10.1016/S1087-1845(02)00539-X) / Fungal Genetics and Biology by N Wiethölter (2003)
  24. Demirci E, Döken MT: Host penetration and infection by the anastomosis groups of Rhizoctonia solani Kühn isolated from potatoes. Tr J of Agriculture and Forestry. 1998, 22: 609-613. / Tr J of Agriculture and Forestry by E Demirci (1998)
  25. Birch PRJ, Cooke DEL: Mechanisms of infection: Oomycetes. Encyclopedia of Plant and Crop Science. 2004, 1 (1): 697-700. (10.1081/E-EPCS-120019929) / Encyclopedia of Plant and Crop Science by PRJ Birch (2004)
  26. Görnhardt B, Rouhara I, Schmelzer E: Cyst germination proteins of the potato pathogen phytophthora infestans share homology with human mucins. Mol Plant-Micro Interact. 2000, 13 (1): 32-42. 10.1094/MPMI.2000.13.1.32. (10.1094/MPMI.2000.13.1.32) / Mol Plant-Micro Interact by B Görnhardt (2000)
  27. Zhao X, Kim Y, Park G, Xu J-R: A mitogen-activated protein kinase cascade regulating infection-related morphogenesis in Magnaporthe grisea. The Plant Cell. 2005, 17: 1317-1329. 10.1105/tpc.104.029116. (10.1105/tpc.104.029116) / The Plant Cell by X Zhao (2005)
  28. Ligterink W, Kroj T, Nieden UZ, Hirt H, Scheel D: Receptor-mediated activation of a MAP kinase in pathogen defense of plants. Science. 1997, 276 (27): 2054-2057. 10.1126/science.276.5321.2054. (10.1126/science.276.5321.2054) / Science by W Ligterink (1997)
  29. Miwa T, Takagi Y, Shinozaki M, Yun C-W, Schell WA, Perfect JR, Kumagai H, Tamaki H: Gpr1, a putative G-protein-coupled receptor, regulates morphogenesis and hypha formation in the pathogenic fungus Candida albicans. Eukaryotic Cell. 2004, 3 (4): 919-931. 10.1128/EC.3.4.919-931.2004. (10.1128/EC.3.4.919-931.2004) / Eukaryotic Cell by T Miwa (2004)
  30. Lafon A, Han K-H, Seo J-A, Yu J-H, d'Enfert C: G-protein and cAMP-mediated signaling in aspergilli: A genomic perspective. Fungal Genetics and Biology. 2006, 43 (7): 490-502. 10.1016/j.fgb.2006.02.001. (10.1016/j.fgb.2006.02.001) / Fungal Genetics and Biology by A Lafon (2006)
  31. Praveen RJ, Reena G, Subramanyam C: Calmodulin-dependent protein phosphorylation during conidial germination and growth of Neurospora crassa. Mycol Res. 1997, 101: 1484-1488. 10.1017/S0953756297004255. (10.1017/S0953756297004255) / Mycol Res by RJ Praveen (1997)
  32. Xu J-R, Hamer JE: MAP kinase and cAMP signaling regulate infection structure formation and pathogenic growth in the rice blast fungus Magnaporthe grisea. Genes & Dev. 1996, 10: 2696-2706. 10.1101/gad.10.21.2696. (10.1101/gad.10.21.2696) / Genes & Dev by J-R Xu (1996)
  33. DeZwaan TM, Carroll AM, Valent B, Sweigard JA: Magnaporthe grisea Pth11p is a novel plasma membrane protein that mediates appressorium differentiation in response to inductive substrate cues. The Plant Cell. 1999, 11: 2013-2030. 10.2307/3871094. (10.1105/tpc.11.10.2013) / The Plant Cell by TM DeZwaan (1999)
  34. Clergeot P-H, Gourgues M, Cots J, Laurans F, Latorse M-P, Pépin R, Tharreau D, Notteghem J-L, Lebrun M-H: PLS1, a gene encoding a tetraspanin-like protein, is required for penetration of rice leaf by the fungal pathogen Magnaporthe grisea. PNAS. 2001, 98 (12): 6963-6968. 10.1073/pnas.111132998. (10.1073/pnas.111132998) / PNAS by P-H Clergeot (2001)
  35. Park G, Bruno KS, Staiger CJ, Talbot NJ, Xu J-R: Independent genetic mechanisms mediate turgor generation and penetration peg formation during plant infection in the rice blast fungus. Molecular Microbiology. 2004, 53 (6): 1695-1707. 10.1111/j.1365-2958.2004.04220.x. (10.1111/j.1365-2958.2004.04220.x) / Molecular Microbiology by G Park (2004)
  36. Wang ZY, Jenkinson JM, Holcombe LJ, Soanes DM, Veneault-Fourrey C, Bhambra GK, Talbot NJ: The molecular biology of appressorium turgor generation by the rice blast fungus Magnaporthe grisea. Biochem Soc Trans. 2005, 33 (Pt 2): 384-388. (10.1042/BST0330384) / Biochem Soc Trans by ZY Wang (2005)
  37. Blanco FA, Judelson HS: A bZIP transcription factor from Phytophthora interacts with a protein kinase and is required for zoospore motility and plant infection. Molecular Microbiology. 2005, 56 (3): 638-648. 10.1111/j.1365-2958.2005.04575.x. (10.1111/j.1365-2958.2005.04575.x) / Molecular Microbiology by FA Blanco (2005)
  38. Liu XH, Lu JP, Zhang L, Dong B, Min H, Lin FC: Involvement of a Magnaporthe grisea serine/threonine kinase gene, MgATG1, in appressorium turgor and pathogenesis. Eukaryot Cell. 2007, 6 (6): 997-1005. 10.1128/EC.00011-07. (10.1128/EC.00011-07) / Eukaryot Cell by XH Liu (2007)
  39. Tonukari NJ, Scott-Craig JS, Walton JD: The Cochliobolus carbonum SNF1 gene is required for cell wall-degrading enzyme expression and virulence on maize. Plant Cell. 2000, 12: 237-248. 10.1105/tpc.12.2.237. (10.1105/tpc.12.2.237) / Plant Cell by NJ Tonukari (2000)
  40. Li D, Ashby AM, Johnstone K: Molecular evidence that the extracellular cutinase Pbc1 is required for pathogenicity of Pyrenopeziza brassicae on oilseed rape. Mol Plant-Micro Interact. 2003, 16: 545-552. 10.1094/MPMI.2003.16.6.545. (10.1094/MPMI.2003.16.6.545) / Mol Plant-Micro Interact by D Li (2003)
  41. Aro N, Pakula T, Penttila M: Transcriptional regulation of plant cell wall degradation by filamentous fungi. FEMS Microbiology Reviews. 2005, 29: 719-739. 10.1016/j.femsre.2004.11.006. (10.1016/j.femsre.2004.11.006) / FEMS Microbiology Reviews by N Aro (2005)
  42. Prats E, Llamas MJ, Jorrin J, Rubiales D: Constitutive coumarin accumulation on sunflower leaf surface prevents rust germ tube growth and appressorium differentiation. Crop science. 2007, 47: 1119-1124. 10.2135/cropsci2006.07.0482. (10.2135/cropsci2006.07.0482) / Crop science by E Prats (2007)
  43. Chumley FG, Valent B: Genetic analysis of melanin-deficient, nonpathogenic mutants of Magnaporthe grisea. Mol Plant-Micro Interact. 1990, 3: 135-143. (10.1094/MPMI-3-135) / Mol Plant-Micro Interact by FG Chumley (1990)
  44. Walker SK, Chitcholtan K, Yu YP, Christenhusz GM, Garrill A: Invasive hyphal growth: An F-actin depleted zone is associated with invasive hyphae of the oomycetes Achlya bisexualis and Phytophthora cinnamomi. Fungal Genetics and Biology. 2006, 43 (5): 357-365. 10.1016/j.fgb.2006.01.004. (10.1016/j.fgb.2006.01.004) / Fungal Genetics and Biology by SK Walker (2006)
  45. Bassilana M, Blyth J, Arkowitz RA: Cdc24, the GDP-GTP exchange factor for Cdc42, is required for invasive hyphal growth of Candida albicans. Eukaryotic cell. 2003, 2 (1): 9-18. 10.1128/EC.2.1.9-18.2003. (10.1128/EC.2.1.9-18.2003) / Eukaryotic cell by M Bassilana (2003)
  46. Park G, Xue C, Zheng L, Lam S, Xu J-R: MST12 regulates infectious growth but not appressorium formation in the rice blast fungus Magnaporthe grisea. Mol Plant-Micro Interact. 2002, 15 (3): 183-192. 10.1094/MPMI.2002.15.3.183. (10.1094/MPMI.2002.15.3.183) / Mol Plant-Micro Interact by G Park (2002)
Dates
Type When
Created 16 years, 6 months ago (Feb. 19, 2009, 2:17 p.m.)
Deposited 4 years ago (Aug. 31, 2021, 5:48 p.m.)
Indexed 4 months, 1 week ago (April 28, 2025, 6:22 p.m.)
Issued 16 years, 7 months ago (Feb. 1, 2009)
Published 16 years, 7 months ago (Feb. 1, 2009)
Published Online 16 years, 6 months ago (Feb. 19, 2009)
Published Print 16 years, 7 months ago (Feb. 1, 2009)
Funders 0

None

@article{Meng_2009, title={Common processes in pathogenesis by fungal and oomycete plant pathogens, described with Gene Ontology terms}, volume={9}, ISSN={1471-2180}, url={http://dx.doi.org/10.1186/1471-2180-9-s1-s7}, DOI={10.1186/1471-2180-9-s1-s7}, number={S1}, journal={BMC Microbiology}, publisher={Springer Science and Business Media LLC}, author={Meng, Shaowu and Torto-Alalibo, Trudy and Chibucos, Marcus C and Tyler, Brett M and Dean, Ralph A}, year={2009}, month=feb }