Crossref
journal-article
Springer Science and Business Media LLC
BMC Evolutionary Biology (297)
References
39
Referenced
150
-
Haldane JBS: The part played by recurrent mutation in evolution. Am Nat. 1933, 67: 5-19. 10.1086/280465.
(
10.1086/280465
) / Am Nat by JBS Haldane (1933) -
Fisher RA: The possible modification of the response of the wild type to recurrent mutations. Am Nat. 1928, 62: 115-126. 10.1086/280193.
(
10.1086/280193
) / Am Nat by RA Fisher (1928) -
Pauling L, Zuckerkandl E: Chemical paleogenetics: molecular restoration studies of extinct forms of life. Acta Chem Scand. 1963, 17: S9-S16.
(
10.3891/acta.chem.scand.17s-0009
) / Acta Chem Scand by L Pauling (1963) -
Ohno S: Evolution by gene duplication. 1970, Berlin-Heidelberg-New York, Springer-Verlag
(
10.1007/978-3-642-86659-3
) / Evolution by gene duplication by S Ohno (1970) -
Lynch M, Conery JS: The evolutionary fate and consequences of duplicate genes. Science. 2000, 290: 1151-1155. 10.1126/science.290.5494.1151.
(
10.1126/science.290.5494.1151
) / Science by M Lynch (2000) -
Kondrashov FA, Rogozin IB, Wolf YI, Koonin EV: Selection in the evolution of gene duplications. Genome Biol. 2002, 3: RESEARCH0008-10.1186/gb-2002-3-2-research0008.
(
10.1186/gb-2002-3-2-research0008
) / Genome Biol by FA Kondrashov (2002) -
Conant GC, Wagner A: Asymmetric sequence divergence of duplicate genes. Genome Res. 2003, 13: 2052-2058. 10.1101/gr.1252603.
(
10.1101/gr.1252603
) / Genome Res by GC Conant (2003) -
Zhang P, Gu Z, Li WH: Different evolutionary patterns between young duplicate genes in the human genome. Genome Biol. 2003, 4: R56-10.1186/gb-2003-4-9-r56.
(
10.1186/gb-2003-4-9-r56
) / Genome Biol by P Zhang (2003) - Li WH: Molecular Evolution. 1997, Sunderland, MA, Sinauer / Molecular Evolution by WH Li (1997)
- Hughes AL: Adaptive Evolution of Genes and Genomes. 1999, New York - Oxford, Oxford University Press / Adaptive Evolution of Genes and Genomes by AL Hughes (1999)
-
Lynch M, Force A: The probability of duplicate gene preservation by subfunctionalization. Genetics. 2000, 154: 459-473.
(
10.1093/genetics/154.1.459
) / Genetics by M Lynch (2000) -
Lynch M, O'Hely M, Walsh B, Force A: The probability of preservation of a newly arisen gene duplicate. Genetics. 2001, 159: 1789-1804.
(
10.1093/genetics/159.4.1789
) / Genetics by M Lynch (2001) -
Fares MA, Wolfe KH: Positive selection and subfunctionalization of duplicated CCT chaperonin subunits. Mol Biol Evol. 2003, 20: 1588-1597. 10.1093/molbev/msg160.
(
10.1093/molbev/msg160
) / Mol Biol Evol by MA Fares (2003) -
Braun FN, Liberles DA: Retention of enzyme gene duplicates by subfunctionalization. Int J Biol Macromol. 2003, 33: 19-22. 10.1016/S0141-8130(03)00059-X.
(
10.1016/S0141-8130(03)00059-X
) / Int J Biol Macromol by FN Braun (2003) -
Yu WP, Brenner S, Venkatesh B: Duplication, degeneration and subfunctionalization of the nested synapsin-Timp genes in Fugu. Trends Genet. 2003, 19: 180-183. 10.1016/S0168-9525(03)00048-9.
(
10.1016/S0168-9525(03)00048-9
) / Trends Genet by WP Yu (2003) -
Altschmied J, Delfgaauw J, Wilde B, Duschl J, Bouneau L, Volff JN, Schartl M: Subfunctionalization of duplicate mitf genes associated with differential degeneration of alternative exons in fish. Genetics. 2002, 161: 259-267.
(
10.1093/genetics/161.1.259
) / Genetics by J Altschmied (2002) -
Massingham T, Davies LJ, Lio P: Analysing gene function after duplication. Bioessays. 2001, 23: 873-876. 10.1002/bies.1128.
(
10.1002/bies.1128
) / Bioessays by T Massingham (2001) -
Seoighe C, Johnston CR, Shields DC: Significantly different patterns of amino acid replacement after gene duplication as compared to after speciation. Mol Biol Evol. 2003, 20: 484-490. 10.1093/molbev/msg059.
(
10.1093/molbev/msg059
) / Mol Biol Evol by C Seoighe (2003) -
Tatusov RL, Koonin EV, Lipman DJ: A genomic perspective on protein families. Science. 1997, 278: 631-637. 10.1126/science.278.5338.631.
(
10.1126/science.278.5338.631
) / Science by RL Tatusov (1997) -
Remm M, Storm CE, Sonnhammer EL: Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J Mol Biol. 2001, 314: 1041-1052. 10.1006/jmbi.2000.5197.
(
10.1006/jmbi.2000.5197
) / J Mol Biol by M Remm (2001) -
Jordan IK, Rogozin IB, Wolf YI, Koonin EV: Microevolutionary genomics of bacteria. Theor Popul Biol. 2002, 61: 435-447. 10.1006/tpbi.2002.1588.
(
10.1006/tpbi.2002.1588
) / Theor Popul Biol by IK Jordan (2002) -
Nembaware V, Crum K, Kelso J, Seoighe C: Impact of the presence of paralogs on sequence divergence in a set of mouse-human orthologs. Genome Res. 2002, 12: 1370-1376. 10.1101/gr.270902.
(
10.1101/gr.270902
) / Genome Res by V Nembaware (2002) -
Yang J, Gu Z, Li WH: Rate of protein evolution versus fitness effect of gene deletion. Mol Biol Evol. 2003, 20: 772-774. 10.1093/molbev/msg078.
(
10.1093/molbev/msg078
) / Mol Biol Evol by J Yang (2003) -
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA: The COG database: an updated version includes eukaryotes. BMC Bioinformatics. 2003, 4: 41-10.1186/1471-2105-4-41.
(
10.1186/1471-2105-4-41
) / BMC Bioinformatics by RL Tatusov (2003) -
Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Rogozin IB, Smirnov S, Sorokin AV, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA: A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes. Genome Biol. 2004, 5: R7-10.1186/gb-2004-5-2-r7.
(
10.1186/gb-2004-5-2-r7
) / Genome Biol by EV Koonin (2004) -
Papp B, Pal C, Hurst LD: Dosage sensitivity and the evolution of gene families in yeast. Nature. 2003, 424: 194-197. 10.1038/nature01771.
(
10.1038/nature01771
) / Nature by B Papp (2003) -
Davis JC, Petrov DA: Preferential duplication of conserved proteins in eukaryotic genomes. PLoS Biol. 2004, 2: E55-10.1371/journal.pbio.0020055.
(
10.1371/journal.pbio.0020055
) / PLoS Biol by JC Davis (2004) - Tanaka T, Nei M: Positive darwinian selection observed at the variable-region genes of immunoglobulins. Mol Biol Evol. 1989, 6: 447-459. / Mol Biol Evol by T Tanaka (1989)
-
Hughes AL: Rapid evolution of immunoglobulin superfamily C2 domains expressed in immune system cells. Mol Biol Evol. 1997, 14: 1-5.
(
10.1093/oxfordjournals.molbev.a025694
) / Mol Biol Evol by AL Hughes (1997) -
Lespinet O, Wolf YI, Koonin EV, Aravind L: The role of lineage-specific gene family expansion in the evolution of eukaryotes. Genome Res. 2002, 12: 1048-1059. 10.1101/gr.174302.
(
10.1101/gr.174302
) / Genome Res by O Lespinet (2002) -
Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL: GenBank. Nucleic Acids Res. 2003, 31: 23-27. 10.1093/nar/gkg057.
(
10.1093/nar/gkg057
) / Nucleic Acids Res by DA Benson (2003) - GenBank: . [http://www.ncbi.nlm.nih.gov]
- Walker DR, Koonin EV: SEALS: a system for easy analysis of lots of sequences. Ismb. 1997, 5: 333-339. / Ismb by DR Walker (1997)
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25: 3389-3402. 10.1093/nar/25.17.3389.
(
10.1093/nar/25.17.3389
) / Nucleic Acids Res by SF Altschul (1997) -
Higgins DG, Thompson JD, Gibson TJ: Using CLUSTAL for multiple sequence alignments. Methods Enzymol. 1996, 266: 383-402. 10.1016/S0076-6879(96)66024-8.
(
10.1016/S0076-6879(96)66024-8
) / Methods Enzymol by DG Higgins (1996) - Ota T, Nei M: Variance and covariances of the numbers of synonymous and nonsynonymous substitutions per site. Mol Biol Evol. 1994, 11: 613-619. / Mol Biol Evol by T Ota (1994)
- Nei M, Gojobori T: Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol. 1986, 3: 418-426. / Mol Biol Evol by M Nei (1986)
- Yang Z: PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci. 1997, 13: 555-556. / Comput Appl Biosci by Z Yang (1997)
- KOGs: . [http://www.ncbi.nlm.nih.gov/COG]
Dates
Type | When |
---|---|
Created | 21 years, 1 month ago (July 10, 2004, 2:25 a.m.) |
Deposited | 11 months, 3 weeks ago (Sept. 13, 2024, 12:10 p.m.) |
Indexed | 11 months, 3 weeks ago (Sept. 13, 2024, 1:10 p.m.) |
Issued | 21 years, 2 months ago (July 6, 2004) |
Published | 21 years, 2 months ago (July 6, 2004) |
Published Online | 21 years, 2 months ago (July 6, 2004) |
@article{Jordan_2004, title={Duplicated genes evolve slower than singletons despite the initial rate increase}, volume={4}, ISSN={1471-2148}, url={http://dx.doi.org/10.1186/1471-2148-4-22}, DOI={10.1186/1471-2148-4-22}, number={1}, journal={BMC Evolutionary Biology}, publisher={Springer Science and Business Media LLC}, author={Jordan, I King and Wolf, Yuri I and Koonin, Eugene V}, year={2004}, month=jul }