DOI: 10.1186/1471-213x-4-10. MPSS profiling of human embryonic stem cells

MPSS profiling of human embryonic stem cells

10.1186/1471-213x-4-10

Crossref journal-article

Springer Science and Business Media LLC

BMC Developmental Biology (297)

Abstract

Abstract Background Pooled human embryonic stem cells (hESC) cell lines were profiled to obtain a comprehensive list of genes common to undifferentiated human embryonic stem cells. Results Pooled hESC lines were profiled to obtain a comprehensive list of genes common to human ES cells. Massively parallel signature sequencing (MPSS) of approximately three million signature tags (signatures) identified close to eleven thousand unique transcripts, of which approximately 25% were uncharacterised or novel genes. Expression of previously identified ES cell markers was confirmed and multiple genes not known to be expressed by ES cells were identified by comparing with public SAGE databases, EST libraries and parallel analysis by microarray and RT-PCR. Chromosomal mapping of expressed genes failed to identify major hotspots and confirmed expression of genes that map to the X and Y chromosome. Comparison with published data sets confirmed the validity of the analysis and the depth and power of MPSS. Conclusions Overall, our analysis provides a molecular signature of genes expressed by undifferentiated ES cells that can be used to monitor the state of ES cells isolated by different laboratories using independent methods and maintained under differing culture conditions

Bibliography

Brandenberger, R., Khrebtukova, I., Thies, R. S., Miura, T., Jingli, C., Puri, R., Vasicek, T., Lebkowski, J., & Rao, M. (2004). MPSS profiling of human embryonic stem cells. BMC Developmental Biology, 4(1).

Authors 9

Ralph Brandenberger (first)
Irina Khrebtukova (additional)
R Scott Thies (additional)
Takumi Miura (additional)
Cai Jingli (additional)
Raj Puri (additional)
Tom Vasicek (additional)
Jane Lebkowski (additional)
Mahendra Rao (additional)

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Dates

Type	When
Created	21 years ago (Aug. 14, 2004, 2:22 a.m.)
Deposited	10 months, 3 weeks ago (Oct. 7, 2024, 9:02 a.m.)
Indexed	10 months, 3 weeks ago (Oct. 8, 2024, 12:16 a.m.)
Issued	21 years ago (Aug. 10, 2004)
Published	21 years ago (Aug. 10, 2004)
Published Online	21 years ago (Aug. 10, 2004)

Funders 0

None

BibTeX

@article{Brandenberger_2004, title={MPSS profiling of human embryonic stem cells}, volume={4}, ISSN={1471-213X}, url={http://dx.doi.org/10.1186/1471-213x-4-10}, DOI={10.1186/1471-213x-4-10}, number={1}, journal={BMC Developmental Biology}, publisher={Springer Science and Business Media LLC}, author={Brandenberger, Ralph and Khrebtukova, Irina and Thies, R Scott and Miura, Takumi and Jingli, Cai and Puri, Raj and Vasicek, Tom and Lebkowski, Jane and Rao, Mahendra}, year={2004}, month=aug }

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