DOI: 10.1186/1471-2105-8-s7-s12. Analysis of nanopore detector measurements using Machine-Learning methods, with application to single-molecule kinetic analysis

Analysis of nanopore detector measurements using Machine-Learning methods, with application to single-molecule kinetic analysis

10.1186/1471-2105-8-s7-s12

Crossref journal-article

Springer Science and Business Media LLC

BMC Bioinformatics (297)

Bibliography

Landry, M., & Winters-Hilt, S. (2007). Analysis of nanopore detector measurements using Machine-Learning methods, with application to single-molecule kinetic analysis. BMC Bioinformatics, 8(S7).

Authors 2

Matthew Landry (first)
Stephen Winters-Hilt (additional)

References 18 Referenced 14

Winters-Hilt S, Vercoutere W, DeGuzman VS, Deamer DW, Akeson M, Haussler D: Highly Accurate Classification of Watson-Crick Basepairs on Termini of Single DNA Molecules. Biophys J. 2003, 84: 967-976. (10.1016/S0006-3495(03)74913-3) / Biophys J by S Winters-Hilt (2003)
Winters-Hilt S: Hidden Markov Model Variants and their Application. BMC Bioinformatics. 2006, 7 (Suppl 2): S14- (10.1186/1471-2105-7-S2-S14) / BMC Bioinformatics by S Winters-Hilt (2006)
Baribault C, Winters-Hilt S: A novel, fast, HMM-with-Duration implementation – for application with a new, pattern recognition informed, nanopore detector. BMC Bioinformatics. 2007, 8 (Suppl 7): S19- (10.1186/1471-2105-8-S7-S19) / BMC Bioinformatics by C Baribault (2007)
Churbanov A, Baribault C, Winters-Hilt S: Duration learning for nanopore ionic flow blockade analysis. BMC Bioinformatics. 2007 / BMC Bioinformatics by A Churbanov (2007)
Iqbal R, Landry M, Winters-Hilt S: DNA Molecule Classification Using Feature Primitives. BMC Bioinformatics. 2006, 7 (Suppl 2): S15- (10.1186/1471-2105-7-S2-S15) / BMC Bioinformatics by R Iqbal (2006)
Winters-Hilt S, Akeson M: Nanopore cheminformatics. DNA and Cell Biology. 2004 / DNA and Cell Biology by S Winters-Hilt (2004)
Vercoutere W, Winters-Hilt S, DeGuzman VS, Deamer D, Ridino S, Rogers JT, Olsen HE, Marziali A, Akeson M: Discrimination Among Individual Watson-Crick Base-Pairs at the Termini of Single DNA Hairpin Molecules. Nucl Acids Res. 2003, 31: 1311-1318. (10.1093/nar/gkg218) / Nucl Acids Res by W Vercoutere (2003)
Vercoutere W, Winters-Hilt S, Olsen H, Deamer DW, Haussler D, Akeson M: Rapid discrimination among individual DNA hairpin molecules at single-nucleotide resolution using an ion channel. Nat Biotechnol. 2001, 19 (3): 248-252. (10.1038/85696) / Nat Biotechnol by W Vercoutere (2001)
Winters-Hilt S, Landry M, Akeson M, Tanase M, Amin I, Coombs A, Morales E, Millet J, Baribault C, Sendamangalam S: Cheminformatics Methods for Novel Nanopore analysis of HIV DNA termini. BMC Bioinformatics. 2006, 7 (Suppl 2): S22- (10.1186/1471-2105-7-S2-S22) / BMC Bioinformatics by S Winters-Hilt (2006)
Winters-Hilt S, Davis A, Amin I, Morales E: Nanopore current transduction analysis of protein binding to non-terminal and terminal DNA regions: analysis of transcription factor binding, retroviral DNA terminus dynamics, and retroviral integrase-DNA binding. BMC Bioinformatics. 2007, 8 (Suppl 7): S10- (10.1186/1471-2105-8-S7-S10) / BMC Bioinformatics by S Winters-Hilt (2007)
Cormen TH, Leiserson CE, Rivest RL: Introduction to Algorithms. 1989, MIT-Press, Cambridge, USA / Introduction to Algorithms by TH Cormen (1989)
Durbin R: Biological sequence analysis : probalistic models of proteins and nucleic acids. 1998, Cambridge, UK New York: Cambridge University Press, xi: 356- (10.1017/CBO9780511790492) / Biological sequence analysis : probalistic models of proteins and nucleic acids by R Durbin (1998)
Vapnik VN: The Nature of Statistical Learning Theory. 1998, Springer-Verlag, New York, 2 / The Nature of Statistical Learning Theory by VN Vapnik (1998)
Burges CJC: A tutorial on support vector machines for pattern recognition. Data Min Knowl Discov. 1998, 2: 121-67. (10.1023/A:1009715923555) / Data Min Knowl Discov by CJC Burges (1998)
Winters-Hilt S, Yelundur A, McChesney C, Landry M: Support Vector Machine Implementations for Classification & Clustering. BMC Bioinformatics. 2006, 7 (Suppl 2): S4- (10.1186/1471-2105-7-S2-S4) / BMC Bioinformatics by S Winters-Hilt (2006)
Prabhakaran A: Power Signal analysis of Channel Current Signal using HMM-EM and Time-domain FSA. 2005, University of New Orleans Masters Thesis in Computer Science / Power Signal analysis of Channel Current Signal using HMM-EM and Time-domain FSA by A Prabhakaran (2005)
Osuna E, Freund R, Girosi F: An improved training algorithm for support vector machines. Neural Networks for Signal Processing VII. Edited by: Principe J, Gile L, Morgan N, Wilson E. 1997, IEEE, New York, 276-85. / Neural Networks for Signal Processing VII by E Osuna (1997)
Thomson K, Amin I, Morales E, Winters-Hilt S: Preliminary Nanopore Cheminformatics Analysis of Aptamer-Target Binding Strength. BMC Bioinformatics. 2007, 8 (Suppl 7): S11- (10.1186/1471-2105-8-S7-S11) / BMC Bioinformatics by K Thomson (2007)

Dates

Type	When
Created	17 years, 10 months ago (Nov. 1, 2007, 11:14 a.m.)
Deposited	6 years, 7 months ago (Jan. 22, 2019, 11:03 p.m.)
Indexed	2 days, 9 hours ago (Sept. 3, 2025, 6:42 a.m.)
Issued	17 years, 10 months ago (Nov. 1, 2007)
Published	17 years, 10 months ago (Nov. 1, 2007)
Published Online	17 years, 10 months ago (Nov. 1, 2007)
Published Print	17 years, 10 months ago (Nov. 1, 2007)

Funders 0

None

BibTeX

@article{Landry_2007, title={Analysis of nanopore detector measurements using Machine-Learning methods, with application to single-molecule kinetic analysis}, volume={8}, ISSN={1471-2105}, url={http://dx.doi.org/10.1186/1471-2105-8-s7-s12}, DOI={10.1186/1471-2105-8-s7-s12}, number={S7}, journal={BMC Bioinformatics}, publisher={Springer Science and Business Media LLC}, author={Landry, Matthew and Winters-Hilt, Stephen}, year={2007}, month=nov }

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