Abstract
A philosophy for defining what constitutes a virtual high-throughput screen is discussed, and the choices that influence decisions at each stage of the computational funnel are investigated, including an in-depth discussion of the generation of molecular libraries. Additionally, we provide advice on the storing, analysis, and visualization of data on the basis of extensive experience in our research group.
References
82
Referenced
236
10.1039/c0md00020e
- 2. Cedar G, Persson K. 2013. How supercomputers will yield a golden age of materials science. Sci. Am., Nov. 19
10.1038/nature03193
10.1016/S1359-6446(05)03686-X
10.1021/ja0572046
10.1021/ct400706g
10.1021/ci300031s
10.1021/ja401184g
10.1021/ci400107k
10.1186/1758-2946-6-7
10.1002/anie.200462457
10.1021/ja902302h
10.1021/ci300415d
10.1021/ci200240e
10.1021/ci1002087
10.1021/ci400529h
10.1021/ci400469u
10.1016/j.cbpa.2005.03.002
10.1186/1758-2946-5-26
10.1021/jm401411z
10.1007/BF00126441
10.1021/jm950792l
10.1023/A:1008184403558
10.1016/S1093-3263(01)00150-4
10.1021/jm030809x
10.1007/s10822-004-6986-2
{'key': 'B27', 'first-page': '316', 'volume': '10', 'author': 'Nicolaou C', 'year': '2007', 'journal-title': 'Curr. Opin. Drug Discov. Devel.'}
/ Curr. Opin. Drug Discov. Devel. by Nicolaou C (2007)10.1021/jm070750k
10.1021/ci700424b
10.1038/nature11691
10.1039/c3ee24138f
10.1021/jp202765c
10.1021/jz400215j
10.1021/ja00402a071
10.1021/jm050054p
10.1016/j.ejmech.2012.06.024
10.1021/ci900301v
10.1002/minf.201400052
10.1021/jz200866s
10.1039/c1ee02056k
10.1038/nature12909
- 41a. Er S, Suh C, Marshak MP, Aspuru-Guzik A. 2015. A computational design of molecules for an all-quinone redox flow battery. Chem. Sci. In press
10.1038/nphoton.2012.31
10.1038/nphoton.2014.12
10.1039/C4CP00547C
10.1016/j.commatsci.2012.10.028
10.1016/0927-0256(96)00008-0
10.1103/PhysRevB.50.17953
10.1103/PhysRevLett.77.3865
10.1103/PhysRevB.44.943
10.1016/j.commatsci.2011.02.023
10.1063/1.4812323
10.1039/C3EE42756K
10.1002/adma.200501717
10.1063/1.1736034
10.1021/ja952478m
10.1021/ci00020a039
10.1021/j100389a010
10.1016/j.drudis.2006.08.006
10.1021/jm010535i
10.1016/j.drudis.2006.06.006
10.2174/138620708783877726
10.2174/157340908786786010
{'key': 'B63', 'volume-title': 'Pharmacology and Therapeutics', 'author': 'Goktug AN', 'year': '2013'}
/ Pharmacology and Therapeutics by Goktug AN (2013)10.1021/cr0780006
10.1021/cc800194j
10.1021/ci300513m
{'key': 'B67', 'first-page': '393', 'volume-title': 'J. Comput. Chem.', 'volume': '13', 'author': 'Klopmand G', 'year': '1992'}
/ J. Comput. Chem. by Klopmand G (1992)10.1021/ci9800211
10.1021/ci025531g
10.1021/ci050510i
10.1021/ci700413a
10.1016/j.acha.2006.04.006
10.1021/ci980339t
10.1007/s11837-006-0226-2
10.1039/c1cp00051a
10.1063/1.3206326
10.1038/srep02810
10.1002/sam.10031
10.1016/S0040-4020(01)82995-1
10.1021/ci0001482
10.1038/nrd1608
Dates
Type | When |
---|---|
Created | 10 years, 5 months ago (March 6, 2015, 12:48 p.m.) |
Deposited | 3 years, 10 months ago (Oct. 13, 2021, 4:38 p.m.) |
Indexed | 18 hours, 39 minutes ago (Aug. 27, 2025, 11:33 a.m.) |
Issued | 10 years, 1 month ago (July 1, 2015) |
Published | 10 years, 1 month ago (July 1, 2015) |
Published Print | 10 years, 1 month ago (July 1, 2015) |
@article{Pyzer_Knapp_2015, title={What Is High-Throughput Virtual Screening? A Perspective from Organic Materials Discovery}, volume={45}, ISSN={1545-4118}, url={http://dx.doi.org/10.1146/annurev-matsci-070214-020823}, DOI={10.1146/annurev-matsci-070214-020823}, number={1}, journal={Annual Review of Materials Research}, publisher={Annual Reviews}, author={Pyzer-Knapp, Edward O. and Suh, Changwon and Gómez-Bombarelli, Rafael and Aguilera-Iparraguirre, Jorge and Aspuru-Guzik, Alán}, year={2015}, month=jul, pages={195–216} }