Abstract
ClpB is thought to be involved in proteolysis because of its sequence similarity to the ClpA subunit of the ClpA-ClpP protease. It has recently been shown that ClpP is a heat shock protein. Here we show that ClpB is the Escherichia coli heat shock protein F84.1. The F84.1 protein was overproduced in strains containing the clpB gene on a plasmid and was absent from two-dimensional gels from a clpB null mutation. Besides possessing a slower growth rate at 44 degrees C, the null mutant strain had a higher rate of death at 50 degrees C. We used reverse transcription of in vivo mRNA to show that the clpB gene was expressed from a sigma 32-specific promoter consensus sequence at both 37 and 42 degrees C. We noted that the clpB+ gene also caused the appearance of a second protein spot, F68.5, on two-dimensional gels. This spot was approximately 147 amino acids smaller than F84.1 and most probably is the result of a second translational start on the clpB mRNA. F68.5 can be observed on many published two-dimensional gels of heat-induced E. coli proteins, but the original catalog of 17 heat shock proteins did not include this spot.
References
42
Referenced
293
- Aksoy S. 1982. Ph.D. thesis. Columbia University New York N.Y.
-
Arps , P. J. , and M. E. Winkler . 1987 . Structural analysis of the Escherichia coli K-12 hisT operon by using a kanamycin resistance cassette . J. Bacteriol. 169 : 1061 - 1070 .
(
10.1128/jb.169.3.1061-1070.1987
) / J. Bacteriol. / Structural analysis of the Escherichia coli K-12 hisT operon by using a kanamycin resistance cassette by Arps P. J. (1987) - Berg K. 1988. Ph.D. thesis. Columbia University New York N.Y.
-
Brosius , J. 1984 . Plasmid vectors for the selection of promoters . Gene 27 : 151 - 160 .
(
10.1016/0378-1119(84)90136-7
) / Gene / Plasmid vectors for the selection of promoters by Brosius J. (1984) -
Casadaban , M. , and S. Cohen . 1980 . Analysis of gene control signals by DNA fusion and cloning in Escherichia coli . J. Mol. Biol. 138 : 179 - 207 .
(
10.1016/0022-2836(80)90283-1
) / J. Mol. Biol. / Analysis of gene control signals by DNA fusion and cloning in Escherichia coli by Casadaban M. (1980) -
Chin , D. T. , S. A. Goff , T. Webster , T. Smith , and A. L. Goldberg . 1988 . Sequence of the Ion gene in Escherichia coli. A heat-shock gene which encodes the ATP-dependent protease La . J. Biol. Chem. 263 : 11718 - 11728 .
(
10.1016/S0021-9258(18)37843-8
) / J. Biol. Chem. / Sequence of the Ion gene in Escherichia coli. A heat-shock gene which encodes the ATP-dependent protease La by Chin D. T. (1988) -
Clarke , L. , and J. Carbon . 1976 . A colony bank containing synthetic ColEl hybrid plasmids representative of the entire E. coli genome . Cell 9 : 91 - 99 .
(
10.1016/0092-8674(76)90055-6
) / Cell / A colony bank containing synthetic ColEl hybrid plasmids representative of the entire E. coli genome by Clarke L. (1976) -
Cone , K. C. , and D. A. Steege . 1985 . Messenger RNA conformation and ribosome selection of translational reinitiation sites in the lac repressor mRNA . J. Mol. Biol. 186 : 725 - 732 .
(
10.1016/0022-2836(85)90392-4
) / J. Mol. Biol. / Messenger RNA conformation and ribosome selection of translational reinitiation sites in the lac repressor mRNA by Cone K. C. (1985) -
Eliason , R. , M. Fontecave , H. Jornvall , M. Krook , and P. Reichard . 1990 . The anaerobic ribonucleoside triphosphate reductase from Escherichia coli requires S-adenosylmethionine as a cofactor . Proc. Natl. Acad. Sci. USA 87 : 3314 - 3318 .
(
10.1073/pnas.87.9.3314
) / Proc. Natl. Acad. Sci. USA / The anaerobic ribonucleoside triphosphate reductase from Escherichia coli requires S-adenosylmethionine as a cofactor by Eliason R. (1990) - Giliman , E. C. , L. B. Slusher , N. C. Martin , and A. K. Hopper . 1991 . MOD5 translation initiation sites determine N6-isopentyladenosine modification of mitochondrial and cytoplasmic tRNA . Mol. Cell. Biol. 11 : 2382 - 2390 . / Mol. Cell. Biol. / MOD5 translation initiation sites determine N6-isopentyladenosine modification of mitochondrial and cytoplasmic tRNA by Giliman E. C. (1991)
-
Gottesman , S. , C. Squires , E. Pichersky , M. Carrington , M. Hobbs , J. S. Mattick , B. Dalrymple , H. Kuramitsu , T. Shiroza , T. Foster , W. P. Clark , B. Ross , C. L. Squires , and M. R. Maurizi . 1990 . Conservation of the regulatory subunit for the Clp ATP-dependent protease in prokaryotes and eukaryotes . Proc. Natl. Acad. Sci. USA 87 : 3513 - 3517 .
(
10.1073/pnas.87.9.3513
) / Proc. Natl. Acad. Sci. USA / Conservation of the regulatory subunit for the Clp ATP-dependent protease in prokaryotes and eukaryotes by Gottesman S. (1990) - Gross C. A. D. B. Straus J. W. Erickson and T. Yura. 1990. The function and regulation of heat shock proteins in Escherichia coli p. 167-189. In R. I. Morimoto A. Tissieres and C. Georgeopoulos (ed.) Stress proteins in biology and medicine. Cold Spring Harbor Laboratory Cold Spring Harbor N.Y.
-
Hwang , B. J. , W. J. Park , C. H. Chung , and A. L. Goldberg . 1987 . Escherichia coli contains a soluble ATP-dependent protease (Ti) distinct from protease La . Proc. Natl. Acad. Sci. USA 84 : 5550 - 5554 .
(
10.1073/pnas.84.16.5550
) / Proc. Natl. Acad. Sci. USA / Escherichia coli contains a soluble ATP-dependent protease (Ti) distinct from protease La by Hwang B. J. (1987) -
Katayama-Fujimura , Y. , S. Gottesman , and M. R. Maurizi . 1987 . A multiple-component, ATP-dependent protease from Escherichia coli . J. Biol. Chem. 262 : 4477 - 4485 .
(
10.1016/S0021-9258(18)61217-7
) / J. Biol. Chem. / A multiple-component, ATP-dependent protease from Escherichia coli by Katayama-Fujimura Y. (1987) -
Kitagawa , M. , C. Wada , S. Yoshioka , and T. Yura . 1991 . Expression of ClpB, an analog of the ATP-dependent protease regulatory subunit in Escherichia coli, is controlled by a heat shock (T factor (u32) . J. Bacteriol. 173 : 4247 - 4253 .
(
10.1128/jb.173.14.4247-4253.1991
) / J. Bacteriol. / Expression of ClpB, an analog of the ATP-dependent protease regulatory subunit in Escherichia coli, is controlled by a heat shock (T factor (u32) by Kitagawa M. (1991) -
Kroh , H. E. , and L. D. Simon . 1990 . The ClpP component of Clp protease is the a32-dependent heat shock protein F21.5 . J. Bacteriol. 172 : 6026 - 6034 .
(
10.1128/jb.172.10.6026-6034.1990
) / J. Bacteriol. / The ClpP component of Clp protease is the a32-dependent heat shock protein F21.5 by Kroh H. E. (1990) -
Lindquist , S. 1986 . The heat shock response. Annu . Rev. Biochem. 55 : 1151 - 1191 .
(
10.1146/annurev.bi.55.070186.005443
) / Rev. Biochem. / The heat shock response. Annu by Lindquist S. (1986) - Lindquist S. (University of Chicago). 1991. Personal communication.
-
Matthews , R. G. , and F. C. Neidhardt . 1989 . Elevated serine catabolism is associated with the heat shock response in Escherichia coli . J. Bacteriol. 171 : 2619 - 2625 .
(
10.1128/jb.171.5.2619-2625.1989
) / J. Bacteriol. / Elevated serine catabolism is associated with the heat shock response in Escherichia coli by Matthews R. G. (1989) - Miller J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory Cold Spring Harbor N.Y.
-
Nath , I. , and S. Laal . 1990 . Nucleotide sequence and deduced amino acid sequence of Mycobacterium leprae gene showing homology to bacterial atp operon . Nucleic Acids Res. 18 : 4935 .
(
10.1093/nar/18.16.4935
) / Nucleic Acids Res. / Nucleotide sequence and deduced amino acid sequence of Mycobacterium leprae gene showing homology to bacterial atp operon by Nath I. (1990) - Neidhardt F. C. and R. A. VanBogelen. 1987. Heat shock response p. 1334-1345. In F. C. Neidhardt J. L. Ingraham K. B. Low B. Magasanik M. Schaecter and H. E. Umbarger (ed.) Escherichia coli and Salmonella typhimurium: cellular and molecular biology. American Society for Microbiology Washington D.C.
-
Neidhardt , F. C. , R. A. VanBogelen , and E. T. Lau . 1983 . Molecular cloning and expression of a gene that controls the high-temperature regulon of Escherichia coli . J. Bacteriol. 153 : 597 - 603 .
(
10.1128/jb.153.2.597-603.1983
) / J. Bacteriol. / Molecular cloning and expression of a gene that controls the high-temperature regulon of Escherichia coli by Neidhardt F. C. (1983) -
Paek , K. - H. , and G. C. Walker . 1986 . Defect in expression of heat-shock proteins at high temperature in xthA mutants . J. Bacteriol. 165 : 763 - 770 .
(
10.1128/jb.165.3.763-770.1986
) / J. Bacteriol. / Defect in expression of heat-shock proteins at high temperature in xthA mutants by Paek K. (1986) - Pedersen , S. , S. Reeh , J. D. Friesen , P. L. Bloch , and F. C. Neidhardt . 1978 . A nomenclature for E. coli proteins . Cell 14 : 186 - 190 . / Cell / A nomenclature for E. coli proteins by Pedersen S. (1978)
- Pedersen , S. , S. Reeh , J. Parker , R. J. Watson , J. D. Friesen , and N. P. Fill . 1976 . Analysis of proteins synthesized in ultraviolet light-irradiated Escherichia coli following infection with bacteriophage Xdrif'18 and Xdfus-3 . Mol. Gen. Genet. 196 : 135 - 140 . / Mol. Gen. Genet. / Analysis of proteins synthesized in ultraviolet light-irradiated Escherichia coli following infection with bacteriophage Xdrif'18 and Xdfus-3 by Pedersen S. (1976)
-
Raina , S. , and C. Georgeopoulos . 1990 . A new Escherichia coli heat shock gene, htrC, whose product is essential for viability only at high temperatures . J. Bacteriol. 172 : 3417 - 3426 .
(
10.1128/jb.172.6.3417-3426.1990
) / J. Bacteriol. / A new Escherichia coli heat shock gene, htrC, whose product is essential for viability only at high temperatures by Raina S. (1990) - Reichard P. (Karolinska Institute). 1991. Personal communication.
-
Sancar , A. , A. M. Hack , and W. D. Rupp . 1979 . Simple method for identification of plasmid-coded proteins . J. Bacteriol. 137 : 692 - 693 .
(
10.1128/jb.137.1.692-693.1979
) / J. Bacteriol. / Simple method for identification of plasmid-coded proteins by Sancar A. (1979) -
Sanchez , Y. , and S. L. Lindquist . 1990 . HSP104 required for thermotolerance . Science 248 : 1112 - 1115 .
(
10.1126/science.2188365
) / Science / HSP104 required for thermotolerance by Sanchez Y. (1990) -
Schlesinger , M. J. 1990 . Heat shock proteins . J. Biol. Chem. 265 : 12111 - 12114 .
(
10.1016/S0021-9258(19)38314-0
) / J. Biol. Chem. / Heat shock proteins by Schlesinger M. J. (1990) -
Shen , W. - F. , C. Squires , and C. L. Squires . 1982 . Nucleotide sequence of the rrnG ribosomal RNA promoter region of Escherichia coli . Nucleic Acids Res. 10 : 3303 - 3313 .
(
10.1093/nar/10.10.3303
) / Nucleic Acids Res. / Nucleotide sequence of the rrnG ribosomal RNA promoter region of Escherichia coli by Shen W. (1982) -
Shiroza , T. , and H. Kuramitsu . 1988 . Sequence analysis of the Streptococcus mutans fructosyltransferase gene and flanking regions . J. Bacteriol. 170 : 810 - 816 .
(
10.1128/jb.170.2.810-816.1988
) / J. Bacteriol. / Sequence analysis of the Streptococcus mutans fructosyltransferase gene and flanking regions by Shiroza T. (1988) - Squires C. L. and J. Fu. Unpublished data.
- Squires C. L. S. Pedersen B. M. Ross and C. Squires. Unpublished data.
-
Tybulewicz , V. L. J. , G. Falk , and J. E. Walker . 1984 . Rhodopseudomonas blastica atp operon. Nucleotide sequence and transcription . J. Mol. Biol. 179 : 185 - 214 .
(
10.1016/0022-2836(84)90465-0
) / J. Mol. Biol. / Rhodopseudomonas blastica atp operon. Nucleotide sequence and transcription by Tybulewicz V. L. J. (1984) -
VanBogelen , R. A. , M. A. Acton , and F. C. Neidhardt . 1987 . Induction of the heat shock regulon does not produce thermotolerance in Escherichia coli . Genes Dev. 1 : 525 - 531 .
(
10.1101/gad.1.6.525
) / Genes Dev. / Induction of the heat shock regulon does not produce thermotolerance in Escherichia coli by VanBogelen R. A. (1987) -
VanBogelen , R. A. , M. E. Hutton , and F. C. Neidhardt . 1990 . Gene-protein database of Escherichia coli K-12: edition 3 . Electrophoresis 11 : 1131 - 1166 .
(
10.1002/elps.1150111205
) / Electrophoresis / Gene-protein database of Escherichia coli K-12: edition 3 by VanBogelen R. A. (1990) -
VanBogelen , R. A. , and F. C. Neidhardt . 1990 . Ribosomes as sensors of heat and cold shock in Escherichia coli . Proc. Natl. Acad. Sci. USA 87 : 5589 - 5593 .
(
10.1073/pnas.87.15.5589
) / Proc. Natl. Acad. Sci. USA / Ribosomes as sensors of heat and cold shock in Escherichia coli by VanBogelen R. A. (1990) -
Walker , J. E. , M. Saraste , M. J. Runswick , and N. J. Gay . 1982 . Distantly related sequences in the a- and P-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold . EMBO J. 1 : 945 - 951 .
(
10.1002/j.1460-2075.1982.tb01276.x
) / EMBO J. / Distantly related sequences in the a- and P-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold by Walker J. E. (1982) -
Wong , S. C. , and A. T. Abdelal . 1990 . Unorthodox expression of an enzyme: evidence for an untranslated region within carA from Pseudomonas aeruginosa . J. Bacteriol. 172 : 630 - 642 .
(
10.1128/jb.172.2.630-642.1990
) / J. Bacteriol. / Unorthodox expression of an enzyme: evidence for an untranslated region within carA from Pseudomonas aeruginosa by Wong S. C. (1990) -
Zagursky , R. J. , K. Baumeister , N. Lomax , and M. L. Berman . 1985 . Rapid and easy sequencing of large linear double-stranded DNA and supercoiled plasmid DNA . Gene Anal. Tech. 2 : 89 - 94 .
(
10.1016/0735-0651(85)90011-1
) / Gene Anal. Tech. / Rapid and easy sequencing of large linear double-stranded DNA and supercoiled plasmid DNA by Zagursky R. J. (1985)
Dates
Type | When |
---|---|
Created | 8 years, 9 months ago (Nov. 7, 2016, 11:33 a.m.) |
Deposited | 4 years ago (July 29, 2021, 1:52 p.m.) |
Indexed | 3 weeks, 2 days ago (July 30, 2025, 8:34 p.m.) |
Issued | 34 years, 1 month ago (July 1, 1991) |
Published | 34 years, 1 month ago (July 1, 1991) |
Published Print | 34 years, 1 month ago (July 1, 1991) |
@article{Squires_1991, title={ClpB is the Escherichia coli heat shock protein F84.1}, volume={173}, ISSN={1098-5530}, url={http://dx.doi.org/10.1128/jb.173.14.4254-4262.1991}, DOI={10.1128/jb.173.14.4254-4262.1991}, number={14}, journal={Journal of Bacteriology}, publisher={American Society for Microbiology}, author={Squires, C L and Pedersen, S and Ross, B M and Squires, C}, year={1991}, month=jul, pages={4254–4262} }