Abstract
The gene encoding cytochrome c553 from Desulfovibrio vulgaris Hildenborough was cloned by using two synthetic deoxyoligonucleotide probes. The amino acid sequence derived from the sequence of the gene differs from that reported by Bruschi and LeGall (Biochim. Biophys. Acta 271:48-60, 1972). Renewed protein sequencing confirmed the correctness of the DNA-derived sequence. The gene sequence indicates cytochrome c553 to be synthesized as a precursor protein with an NH2-terminal signal sequence of 24 residues.
References
29
Referenced
42
-
Ambler , R. P. 1963 . The amino acid sequence of Pseudomonas cytochrome c-551 . Biochem. J. 89 : 349 - 378 .
(
10.1042/bj0890349
) / Biochem. J. / The amino acid sequence of Pseudomonas cytochrome c-551 by Ambler R. P. (1963) -
Ambler , R. P. , M. Daniel , L. McLellan , T. E. Meyer , M. A. Cusanovich , and M. D. Kamen . 1987 . Amino acid sequences of cytochrome c-554(548) and cytochrome c' from a halophylic denitrifying bacterium of the genus Paracoccus . Biochem. J. 248 : 365 - 371 .
(
10.1042/bj2480365
) / Biochem. J. / Amino acid sequences of cytochrome c-554(548) and cytochrome c' from a halophylic denitrifying bacterium of the genus Paracoccus by Ambler R. P. (1987) - Bankier A. T. and B. G. Barrell. 1983. Shotgun DNA sequencing p. 1-34. In R. A. Flavell (ed.) Techniques in the life sciences B5. Nucleic acid biochemistry B508. Elsevier Scientific Publishers New York.
-
Benson , S. A. , M. N. Hall , and T. J. Silhavy . 1985 . Genetic analysis of protein export in Escherichia coli K12. Annu . Rev. Biochem. 54 : 101 - 134 .
(
10.1146/annurev.bi.54.070185.000533
) / Rev. Biochem. / Genetic analysis of protein export in Escherichia coli K12. Annu by Benson S. A. (1985) -
Bonicel , J. , P. Couchoud , E. Foglizzo , P. Desnuelle , and C. Chapus . 1981 . Amino acid sequence of horse colipase B . Biochim. Biophys. Acta 669 : 39 - 45 .
(
10.1016/0005-2795(81)90221-X
) / Biochim. Biophys. Acta / Amino acid sequence of horse colipase B by Bonicel J. (1981) -
Bruschi , M. , and J. LeGall . 1972 . c-Type cytochromes of Desulfovibrio vulgaris. The primary structure of cytochrome C553 . Biochim. Biophys. Acta 271 : 48 - 60 .
(
10.1016/0005-2795(72)90131-6
) / Biochim. Biophys. Acta / c-Type cytochromes of Desulfovibrio vulgaris. The primary structure of cytochrome C553 by Bruschi M. (1972) -
Crestfield , A. M. , S. Moore , and W. H. Stein . 1963 . The preparation and enzymatic hydrolysis of reduced and S-carboxymethylated proteins . J. Biol. Chem. 238 : 622 - 627 .
(
10.1016/S0021-9258(18)81308-4
) / J. Biol. Chem. / The preparation and enzymatic hydrolysis of reduced and S-carboxymethylated proteins by Crestfield A. M. (1963) -
Curley , G. P. , and G. Voordouw . 1988 . Cloning and sequencing of the gene encoding flavodoxin from Desulfovibrio ulgaris Hildenborough . FEMS Microbiol. Lett. 49 : 295 - 299 .
(
10.1111/j.1574-6968.1988.tb02733.x
) / FEMS Microbiol. Lett. / Cloning and sequencing of the gene encoding flavodoxin from Desulfovibrio ulgaris Hildenborough by Curley G. P. (1988) -
Daldal , F. , S. Cheng , J. Applebaum , E. Davidson , and R. C. Prince . 1986 . Cytochrome c, is not essential for photosynthetic growth of Rhodopseudomonas capsulata . Proc. Natl. Acad. Sci. USA 83 : 2012 - 2016 .
(
10.1073/pnas.83.7.2012
) / Proc. Natl. Acad. Sci. USA / Cytochrome c, is not essential for photosynthetic growth of Rhodopseudomonas capsulata by Daldal F. (1986) -
Donohue , T. J. , A. G. McEwan , and S. Kaplan . 1986 . Cloning, DNA sequence, and expression of the Rhodobacter sphaeroides cytochrome c2 gene . J. Bacteriol. 168 : 962 - 972 .
(
10.1128/JB.168.2.962-972.1986
) / J. Bacteriol. / Cloning, DNA sequence, and expression of the Rhodobacter sphaeroides cytochrome c2 gene by Donohue T. J. (1986) -
Higuchi , M. , K. Inaka , N. Yasuoka , and T. Yagi . 1987 . Isolation and crystallization of high molecular weight cytochrome from Desulfovibrio vulgaris Hildenborough. Biochim. Biophys. Acta 911 : 341 - 348 .
(
10.1016/0167-4838(87)90075-6
) / Hildenborough. Biochim. Biophys. Acta / Isolation and crystallization of high molecular weight cytochrome from Desulfovibrio vulgaris by Higuchi M. (1987) -
Higuchi , Y. , M. Kusunoki , Y. Matsuura , W. Yasuoka , and M. Kakudo . 1984 . Refined structure of cytochrome C3 at 1.8 A resolution . J. Mol. Biol. 172 : 109 - 139 .
(
10.1016/0022-2836(84)90417-0
) / J. Mol. Biol. / Refined structure of cytochrome C3 at 1.8 A resolution by Higuchi Y. (1984) - Le Gall J. and M. Bruschi-Heriaud. 1968. Purification and some properties of a new cytochrome from Desulfovibrio desulfuricans p. 467-470. In K. Okunuki M. D. Kamen and I. Sekuzo (ed.). Structure and function of cytochromes. University of Tokyo Press Tokyo.
-
Le Gall , J. , and H. D. Peck , Jr. 1987 . Amino-terminal amino acid sequences of electron transfer proteins from gram-negative bacteria as indicators of their cellular localization: the sulfate reducing bacteria . FEMS Microbiol. Rev. 46 : 35 - 40 .
(
10.1111/j.1574-6968.1987.tb02450.x
) / FEMS Microbiol. Rev. / Amino-terminal amino acid sequences of electron transfer proteins from gram-negative bacteria as indicators of their cellular localization: the sulfate reducing bacteria by Le Gall J. (1987) - Maniatis T. E. F. Fritsch and J. Sambrook. 1982. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Cold Spring Harbor N.Y.
-
Moura , I. , G. Fauque , J. LeGall , A. V. Xavier , and J. J. G. Moura . 1987 . Characterization of the cytochrome system of a nitrogen-fixing strain of a sulfate-reducing bacterium: Desulfovibrio desulfuricans strain Berre-Eau . Eur. J. Biochem. 162 : 547 - 554 .
(
10.1111/j.1432-1033.1987.tb10674.x
) / Eur. J. Biochem. / Characterization of the cytochrome system of a nitrogen-fixing strain of a sulfate-reducing bacterium: Desulfovibrio desulfuricans strain Berre-Eau by Moura I. (1987) -
Nakagawa , A. , E. Nagashima , Y. Higuchi , M. Kusunoki , Y. Matsuura , N. Yasuoka , Y. Katsube , H. Chichara , and T. Yagi . 1986 . Crystallographic study of cytochrome C553 from Desulfovibrio i'ulgaris . J. Biochem. 99 : 605 - 606 .
(
10.1093/oxfordjournals.jbchem.a135518
) / J. Biochem. / Crystallographic study of cytochrome C553 from Desulfovibrio i'ulgaris by Nakagawa A. (1986) -
Nakano , K. , Y. Kikumoto , and T. Yagi . 1983 . Amino acid sequence of cytochrome c-553 from Desulfovibrio vulgaris Miyazaki . J. Biol. Chem. 258 : 12409 - 12412 .
(
10.1016/S0021-9258(17)44190-1
) / J. Biol. Chem. / Amino acid sequence of cytochrome c-553 from Desulfovibrio vulgaris Miyazaki by Nakano K. (1983) -
Odom , J. M. , and H. D. Peck , Jr. 1984 . Hydrogenase, electron transferring proteins and energy coupling in the sulfate-reducing bacteria Desulfovibrio. Annu. Rev. Microbiol. 38 : 551 - 592 .
(
10.1146/annurev.mi.38.100184.003003
) / Desulfovibrio. Annu. Rev. Microbiol. / Hydrogenase, electron transferring proteins and energy coupling in the sulfate-reducing bacteria by Odom J. M. (1984) -
Ogata , M. , K. Arihara , and T. Yagi . 1981 . D-Lactate dehydrogenase of Desulfovibrio vulgaris . J. Biochem. 89 : 1423 - 1431 .
(
10.1093/oxfordjournals.jbchem.a133334
) / J. Biochem. / D-Lactate dehydrogenase of Desulfovibrio vulgaris by Ogata M. (1981) -
Pierrot , M. , R. Haser , M. Frey , F. Payan , and J. P. Astier . 1982 . Crystal structure and electron transfer properties of cytochrome c3 . J. Biol. Chem. 257 : 14341 - 14348 .
(
10.1016/S0021-9258(19)45386-6
) / J. Biol. Chem. / Crystal structure and electron transfer properties of cytochrome c3 by Pierrot M. (1982) - Postgate J. R. 1984. The sulphate-reducing bacteria 2nd ed. Cambridge University Press Cambridge.
- Sanger , F. , S. Nicklen , and A. R. Coulsen . 1977 . DNA sequencing with chain-terminating inhibitors . Proc. Nati. Acad. Aci. USA 74 : 5363 - 5367 . / Proc. Nati. Acad. Aci. USA / DNA sequencing with chain-terminating inhibitors by Sanger F. (1977)
-
Staden , R. 1982 . Automation of the computer handling of gel reading data produced by the shotgun method of DNA sequencing . Nucleic Acids Res. 10 : 4731 - 4751 .
(
10.1093/nar/10.15.4731
) / Nucleic Acids Res. / Automation of the computer handling of gel reading data produced by the shotgun method of DNA sequencing by Staden R. (1982) - Voordouw G. 1987. Molecular biology of redox proteins in sulphate reduction p. 147-160. In J. A. Cole and S. Ferguson (ed.) The nitrogen and sulphur cycles. Cambridge University Press Cambridge.
-
Voordouw , G. 1988 . Cloning of genes encoding redox proteins of known amino acid sequence from a library of the Desulfovibrio vutlgaris (Hildenborough) genome . Gene 69 : 75 - 83 .
(
10.1016/0378-1119(88)90010-8
) / Gene / Cloning of genes encoding redox proteins of known amino acid sequence from a library of the Desulfovibrio vutlgaris (Hildenborough) genome by Voordouw G. (1988) -
Voordouw , G. , and S. Brenner . 1986 . Cloning and sequencing of the gene encoding cytochrome C3 from Desulfovibrio vulgaris (Hildenborough) . Eur. J. Biochem. 159 : 347 - 351 .
(
10.1111/j.1432-1033.1986.tb09874.x
) / Eur. J. Biochem. / Cloning and sequencing of the gene encoding cytochrome C3 from Desulfovibrio vulgaris (Hildenborough) by Voordouw G. (1986) -
Yagi , T. 1979 . Purification and properties of cytochrome c-553, an electron acceptor for formate dehydrogenase of Desulfovibrio vulgaris Miyazaki. Biochim. Biophys. Acta 548 : 96 - 105 .
(
10.1016/0005-2728(79)90190-7
) / Miyazaki. Biochim. Biophys. Acta / Purification and properties of cytochrome c-553, an electron acceptor for formate dehydrogenase of Desulfovibrio vulgaris by Yagi T. (1979) -
Yanisch-Perron , C. , J. Vieira , and J. Messing . 1985 . Improved M13 phage cloning vectors and host strains: nucleotide sequences of M13mpl 8 and pUC19 vectors . Gene 33 : 103 - 119 .
(
10.1016/0378-1119(85)90120-9
) / Gene / Improved M13 phage cloning vectors and host strains: nucleotide sequences of M13mpl 8 and pUC19 vectors by Yanisch-Perron C. (1985)
Dates
Type | When |
---|---|
Created | 8 years, 9 months ago (Nov. 4, 2016, 10:12 a.m.) |
Deposited | 4 years ago (July 29, 2021, 1:11 p.m.) |
Indexed | 1 year, 9 months ago (Nov. 23, 2023, 2:17 p.m.) |
Issued | 36 years, 2 months ago (June 1, 1989) |
Published | 36 years, 2 months ago (June 1, 1989) |
Published Print | 36 years, 2 months ago (June 1, 1989) |
@article{van_Rooijen_1989, title={Cloning and sequencing of the gene encoding cytochrome c553 from Desulfovibrio vulgaris Hildenborough}, volume={171}, ISSN={1098-5530}, url={http://dx.doi.org/10.1128/jb.171.6.3575-3578.1989}, DOI={10.1128/jb.171.6.3575-3578.1989}, number={6}, journal={Journal of Bacteriology}, publisher={American Society for Microbiology}, author={van Rooijen, G J and Bruschi, M and Voordouw, G}, year={1989}, month=jun, pages={3575–3578} }