Crossref journal-article
American Society for Microbiology
Journal of Bacteriology (235)
Abstract

The REV1 gene of Saccharomyces cerevisiae is required for normal induction of mutations by physical and chemical agents. We have determined the sequence of a 3,485-base-pair segment of DNA that complements the rev1-1 mutant. Gene disruption was used to confirm that this DNA contained the REV1 gene. The sequenced segment contains a single long open reading frame, which can encode a polypeptide of 985 amino acid residues. The REV1 transcript is 3.1 kilobase pairs in length. Frameshift mutations introduced into the open reading frame yielded a Rev-phenotype. A base substitution, encoding Gly-193 to Arg-193, was found in this open reading frame in rev1-1. Deletion mutants, lacking segments of the 5' region of REV1, had intermediate mutability relative to REV1 and rev1-1; a complete deletion exhibited lower mutability than rev1-1. REV1 is not an essential gene. An in-frame fusion of the 5' end of the REV1 open reading frame to the lacZ gene produced beta-galactosidase activity constitutively. The predicted REV1 protein is hydrophilic, with a predicted pI of 9.82. No homologies to RAD1, RAD2, RAD3, RAD7, or RAD10 proteins were noted. A 152-residue internal segment displayed 25% identity with UMUC protein.

Bibliography

Larimer, F. W., Perry, J. R., & Hardigree, A. A. (1989). The REV1 gene of Saccharomyces cerevisiae: isolation, sequence, and functional analysis. Journal of Bacteriology, 171(1), 230–237.

Authors 3
  1. F W Larimer (first)
  2. J R Perry (additional)
  3. A A Hardigree (additional)
References 57 Referenced 111
  1. Angulo , J. F. , J. Schwenke , P. L. Moreau , E. Mouustacchi , and R. Devoret . 1985 . A yeast protein analogous to Escherichia coli RecA protein whose cellular level is enhanced after UV irradiation . Mol. Gen. Genet. 201 : 20 - 24 . (10.1007/BF00397980) / Mol. Gen. Genet. / A yeast protein analogous to Escherichia coli RecA protein whose cellular level is enhanced after UV irradiation by Angulo J. F. (1985)
  2. Bennetzen , J. L. , and B. D. Hall . 1982 . The primary structure of the Saccharomyces cerevisiae gene for alcohol dehydrogenase I . J. Biol. Chem. 257 : 3018 - 3025 . (10.1016/S0021-9258(19)81067-0) / J. Biol. Chem. / The primary structure of the Saccharomyces cerevisiae gene for alcohol dehydrogenase I by Bennetzen J. L. (1982)
  3. Bennetzen , J. L. , and B. D. Hall . 1982 . Codon selection in yeast . J. Biol. Chem. 257 : 3026 - 3031 . (10.1016/S0021-9258(19)81068-2) / J. Biol. Chem. / Codon selection in yeast by Bennetzen J. L. (1982)
  4. Braus , G. , G. Panvivini , and R. Hitter . 1988 . A consensus transcription termination sequence in the promoter region is necessary for efficient gene expression of the TRPI gene of Saccharomyces cerevisiae . Mol. Gen. Genet. 212 : 495 - 504 . (10.1007/BF00330855) / Mol. Gen. Genet. / A consensus transcription termination sequence in the promoter region is necessary for efficient gene expression of the TRPI gene of Saccharomyces cerevisiae by Braus G. (1988)
  5. Breathnach , R. , and P. Chambon . 1981 . Organization and expression of eucaryotic split genes coding for proteins. Annu . Rev. Biochem. 50 : 349 - 383 . (10.1146/annurev.bi.50.070181.002025) / Rev. Biochem. / Organization and expression of eucaryotic split genes coding for proteins. Annu by Breathnach R. (1981)
  6. Broach , J. R. , J. N. Strathern , and J. B. Hcks . 1979 . Transformation in yeast: development of a hybrid cloning vector and isolation of the CAN) gene . Gene 8 : 121 - 133 . (10.1016/0378-1119(79)90012-X) / Gene / Transformation in yeast: development of a hybrid cloning vector and isolation of the CAN) gene by Broach J. R. (1979)
  7. C n, M. J., A. Martinez-Arias , S. K. Shapira, and J. Chou . 1983 . (3-Galactosidase gene fusions for analyzing gene expression in Escherichia coli and yeast . Methods Enzymol. 100 : 293 - 308 . (10.1016/0076-6879(83)00063-4) / Methods Enzymol. / (3-Galactosidase gene fusions for analyzing gene expression in Escherichia coli and yeast by Martinez-Arias S. K. (1983)
  8. Cian , A. M. , and T. F. Donahue . 1987 . Sequence and structural features associated with translational initiator regions in yeasta review . Gene 59 : 1 - 18 . (10.1016/0378-1119(87)90261-7) / Gene / Sequence and structural features associated with translational initiator regions in yeasta review by Cian A. M. (1987)
  9. Cole , G. M. , D. Schild , S. T. Lovett , and R. K. Mortimer . 1987 . Regulation of RAD54- and RAD52-lacZ gene fusions in Saccharomyces cerevisiae in response to DNA damage . Mol. Cell. Biol. 7 : 1078 - 1084 . (10.1128/MCB.7.3.1078) / Mol. Cell. Biol. / Regulation of RAD54- and RAD52-lacZ gene fusions in Saccharomyces cerevisiae in response to DNA damage by Cole G. M. (1987)
  10. Filetici , P. , N. Junakovic , and P. Ballario . 1985 . Rapid alkaline preparation for yeast circular covalently closed DNA molecules . Curr. Genet. 9 : 123 - 126 . (10.1007/BF00436959) / Curr. Genet. / Rapid alkaline preparation for yeast circular covalently closed DNA molecules by Filetici P. (1985)
  11. Gannon , F. , K. O'Hare , F. Perrin , J. P. LePennec , C. Benoist , M. Cochet , R. Brentnach , A. Royal , A. Garapin , B. Can M , and P. Chambon . 1979 . Organization and sequences at the 5' end of a cloned complete ovalbumin gene . Nature (London) 278 : 428 - 434 . (10.1038/278428a0) / Nature (London) / Organization and sequences at the 5' end of a cloned complete ovalbumin gene by Gannon F. (1979)
  12. Hames B. D. and S. J. Higgins. 1985. Nucleic acid hybridization. IRL Press Oxford.
  13. Hanan , D. 1983 . Studies on transformation of Escherichia coli with plasmids . J. Mol. Biol. 155 : 557 - 580 . (10.1016/S0022-2836(83)80284-8) / J. Mol. Biol. / Studies on transformation of Escherichia coli with plasmids by Hanan D. (1983)
  14. Haynes R. H. and B. A. Kunz. 1981. DNA repair and mutagenesis in yeast p. 371-414. In J. N. Strathern E. W. Jones and J. R. Broach (ed.) The molecular biology of the yeast Saccharomyces. Life cycle and inheritance. Cold Spring Harbor Laboratory Cold Spring Harbor N.Y.
  15. Hohn , B. , knd J. Coins . 1980 . A small cosmid for efficient cloning of large DNA fragments . Gene 11 : 291 - 298 . (10.1016/0378-1119(80)90069-4) / Gene / A small cosmid for efficient cloning of large DNA fragments by Hohn B. (1980)
  16. Hu , N. T. , and J. Messing . 1982 . The making of strand-specific M13 probes . Gene 17 : 271 - 277 . (10.1016/0378-1119(82)90143-3) / Gene / The making of strand-specific M13 probes by Hu N. T. (1982)
  17. Ito , H. , Y. Fukuda , K. Murata , and A. Kinura . 1983 . Transformation of intact yeast cells treated with alkali cations . J. Bacteriol. 153 : 163 - 168 . (10.1128/JB.153.1.163-168.1983) / J. Bacteriol. / Transformation of intact yeast cells treated with alkali cations by Ito H. (1983)
  18. Jentsch , S. , J. P. McGrath , and A. Varshavsky . 1987 . The yeast DNA repair gene RAD6 encodes a ubiquitin-conjugating enzyme . Nature (London) 329 : 131 - 134 . (10.1038/329131a0) / Nature (London) / The yeast DNA repair gene RAD6 encodes a ubiquitin-conjugating enzyme by Jentsch S. (1987)
  19. Kuo , C. - L. , and J. L. Campbeld . 1983 . Cloning of Saccharomyces cerevisiae DNA replication genes: isolation of the CDC8 gene and two genes that compensate for the cdc 8-1 mutation . Mol. Cell. Biol. 3 : 1730 - 1737 . / Mol. Cell. Biol. / Cloning of Saccharomyces cerevisiae DNA replication genes: isolation of the CDC8 gene and two genes that compensate for the cdc 8-1 mutation by Kuo C. (1983)
  20. Lawrence , C. W. 1982 . Mutagenesis in Saccharomyces cerevisiae . Adv. Genet. 21 : 173 - 274 . (10.1016/S0065-2660(08)60299-0) / Adv. Genet. / Mutagenesis in Saccharomyces cerevisiae by Lawrence C. W. (1982)
  21. Lawrence , C. W. , G. Das , and R. B. Christensen . 1985 . REV7, a new gene concerned with UV mutagenesis in yeast . Mol. Gen. Genet. 200 : 80 - 85 . (10.1007/BF00383316) / Mol. Gen. Genet. / REV7, a new gene concerned with UV mutagenesis in yeast by Lawrence C. W. (1985)
  22. Lawrence , C. W. , P. E. Nisson , and R. B. Christensen . 1985 . UV and chemical mutagenesis in rev 7 mutants of yeast . Mol. Gen. Genet. 200 : 86 - 91 . (10.1007/BF00383317) / Mol. Gen. Genet. / UV and chemical mutagenesis in rev 7 mutants of yeast by Lawrence C. W. (1985)
  23. Lawrence , C. W. , T. O'Brien , and J. Bond . 1984 . UV-induced reversion of his 4 frameshift mutations in rad 6, revi, and rev 3 mutants of yeast . Mol. Gen. Genet. 195 : 487 - 490 . (10.1007/BF00341451) / Mol. Gen. Genet. / UV-induced reversion of his 4 frameshift mutations in rad 6, revi, and rev 3 mutants of yeast by Lawrence C. W. (1984)
  24. Lemontt , J. F. 1971 . Mutants of yeast defective in mutation induced by ultraviolet light . Genetics 68 : 21 - 23 . (10.1093/genetics/68.1.21) / Genetics / Mutants of yeast defective in mutation induced by ultraviolet light by Lemontt J. F. (1971)
  25. Lemontt J. F. 1980. Genetic and physiological factors affecting repair and mutagenesis in yeast p. 85-120. In W. M. Generoso M. D. Shelby and F. J. deSerres (ed.) DNA repair artid mutagenesis in eukaryotes. Plenum Publishing Corp. New York. (10.1007/978-1-4684-3842-0_7)
  26. Lipman , D. J. , and W. R. Pearson . 1985 . Rapid and sensitive protein similarity searches . Science 227 : 1435 - 1441 . (10.1126/science.2983426) / Science / Rapid and sensitive protein similarity searches by Lipman D. J. (1985)
  27. McClanahan , T. , and K. McEntee . 1984 . Specific transcripts are elevated in Saccharomyces cerevisiae in response to DNA damage . Mol. Cell. Biol. 4 : 2356 - 2363 . (10.1128/MCB.4.11.2356) / Mol. Cell. Biol. / Specific transcripts are elevated in Saccharomyces cerevisiae in response to DNA damage by McClanahan T. (1984)
  28. Madura , K. , and S. Prakash . 1986 . Nucleotide sequence, transcript mapping, and regulation of the RAD2 gene of Saccharomyces cerevisiae . J. Bacteriol. 166 : 914 - 923 . (10.1128/JB.166.3.914-923.1986) / J. Bacteriol. / Nucleotide sequence, transcript mapping, and regulation of the RAD2 gene of Saccharomyces cerevisiae by Madura K. (1986)
  29. Maniatis T. E. F. Fritsch and J. Sambrook. 1982. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Cold Spring Harbor N.Y.
  30. Marinus , M. G. 1973 . Location of DNA methylation genes on the Escherichia coli K-12 genetic map . Mol. Gen. Genet. 127 : 47 - 55 . (10.1007/BF00267782) / Mol. Gen. Genet. / Location of DNA methylation genes on the Escherichia coli K-12 genetic map by Marinus M. G. (1973)
  31. Murray , N. E. , W. J. Brammer , and K. Murray . 1977 . Lambdoid phages that sinmplify the recovery of in vitro recombinants . Mol. Gen. Genet. 150 : 53 - 61 . (10.1007/BF02425325) / Mol. Gen. Genet. / Lambdoid phages that sinmplify the recovery of in vitro recombinants by Murray N. E. (1977)
  32. Nagpal , M. L. , D. R. Higgins , and S. Prakash . 1985 . Expression of the RADI and RAD3 genes of Saccharomyces cerevisiae is not affected by DNA damage or during the cell division cycle . Mol. Gen. Genet. 199 : 59 - 63 . (10.1007/BF00327510) / Mol. Gen. Genet. / Expression of the RADI and RAD3 genes of Saccharomyces cerevisiae is not affected by DNA damage or during the cell division cycle by Nagpal M. L. (1985)
  33. Naumovski , L. , G. Chu , P. Berg , and E. C. Friedberg . 1985 . RAD3 gene of Saccharomyces cerevisiae: nucleotide sequence of wild-type and mutant alleles, transcript mapping, and aspects of gene regulation . Mol. Cell. Biol. 5 : 17 - 26 . (10.1128/MCB.5.1.17) / Mol. Cell. Biol. / RAD3 gene of Saccharomyces cerevisiae: nucleotide sequence of wild-type and mutant alleles, transcript mapping, and aspects of gene regulation by Naumovski L. (1985)
  34. Nisson , P. E. , and C. W. Lawrence . 1986 . The isolation and characterization of ngm 2, a mutation that affects nitrosoguanidine mutagenesis in yeast . Mol. Gen. Genet. 204 : 90 - 97 . (10.1007/BF00330193) / Mol. Gen. Genet. / The isolation and characterization of ngm 2, a mutation that affects nitrosoguanidine mutagenesis in yeast by Nisson P. E. (1986)
  35. Njagi , G. D. E. , and B. J. Kilbey . 1982 . cdc 7-1, a temperature sensitive cell-cycle mutant which interferes with induced mutation in Saccharomyces cerevisiae . Mol. Gen. Genet. 186 : 478 - 481 . (10.1007/BF00337951) / Mol. Gen. Genet. / cdc 7-1, a temperature sensitive cell-cycle mutant which interferes with induced mutation in Saccharomyces cerevisiae by Njagi G. D. E. (1982)
  36. Olson , M. V. , K. Loughney , and B. D. Hall . 1979 . Identification of the yeast DNA sequences that correspond to specific tyrosine-inserting nonsense suppressor loci . J. Mol. Biol. 132 : 387 - 410 . (10.1016/0022-2836(79)90267-5) / J. Mol. Biol. / Identification of the yeast DNA sequences that correspond to specific tyrosine-inserting nonsense suppressor loci by Olson M. V. (1979)
  37. Orr-Weaver , T. L. , J. W. Szostak , and R. J. Rothstein . 1983 . Genetic applications of yeast transformation with linear and gapped plasmids . Methods Enzymol. 101 : 228 - 245 . (10.1016/0076-6879(83)01017-4) / Methods Enzymol. / Genetic applications of yeast transformation with linear and gapped plasmids by Orr-Weaver T. L. (1983)
  38. Patterson , M. , R. A. Sclafani , W. L. Fangman , and J. Rosamond . 1986 . Molecular characterization of cell cycle gene CDC7 from Saccharomyces cerevisiae . Mol. Cell. Biol. 6 : 1590 - 1598 . (10.1128/MCB.6.5.1590) / Mol. Cell. Biol. / Molecular characterization of cell cycle gene CDC7 from Saccharomyces cerevisiae by Patterson M. (1986)
  39. Perozzi , G. , and S. Prakash . 1986 . RAD7 gene of Saccharomyces cerevisiae: transcripts, nucleotide sequence analysis, and functional relationship between the RAD7 and RAD23 gene products . Mol. Cell. Biol. 6 : 1497 - 1507 . (10.1128/MCB.6.5.1497) / Mol. Cell. Biol. / RAD7 gene of Saccharomyces cerevisiae: transcripts, nucleotide sequence analysis, and functional relationship between the RAD7 and RAD23 gene products by Perozzi G. (1986)
  40. Perry , K. L. , S. J. Elledge , B. B. Mitchell , L. Marsh , and G. C. Walker . 1985 . umuDC and mucAB operons whose products are required for UV light- and chemical-induced mutagenesis: UmuD, MucA, and LexA proteins share homology . Proc. Natl. Acad. Sci. USA 82 : 4331 - 4335 . (10.1073/pnas.82.13.4331) / Proc. Natl. Acad. Sci. USA / umuDC and mucAB operons whose products are required for UV light- and chemical-induced mutagenesis: UmuD, MucA, and LexA proteins share homology by Perry K. L. (1985)
  41. Peterson , T. A. , L. Prakash , S. Prakash , M. A. Osley , and S. I. Reed . 1985 . Regulation of CDC9, the Saccharomyces cerevisiae gene that encodes DNA ligase . Mol. Cell. Biol. 5 : 226 - 235 . (10.1128/MCB.5.1.226) / Mol. Cell. Biol. / Regulation of CDC9, the Saccharomyces cerevisiae gene that encodes DNA ligase by Peterson T. A. (1985)
  42. Proudfoot , N. J. , and G. G. Brownlee . 1976 . 3' non-coding region sequences in eukaryotic messenger RNA . Nature (London) 263 : 211 - 214 . (10.1038/263211a0) / Nature (London) / 3' non-coding region sequences in eukaryotic messenger RNA by Proudfoot N. J. (1976)
  43. Reynolds , P. , D. R. Higgins , L. Prakash , and S. Prakash . 1985 . The nucleotide sequence of the RAD3 gene of Saccharomyces cerevisiae: a potential adenine nucleotide binding amino acid sequence and a nonessential acidic carboxyl terminal region . Nucleic Acids Res. 13 : 2357 - 2372 . (10.1093/nar/13.7.2357) / Nucleic Acids Res. / The nucleotide sequence of the RAD3 gene of Saccharomyces cerevisiae: a potential adenine nucleotide binding amino acid sequence and a nonessential acidic carboxyl terminal region by Reynolds P. (1985)
  44. Reynolds , P. , L. Prakash , D. Dumais , G. Perozzi , and S. Prakash . 1985 . Nucleotide sequence of the RADIO gene of Saccharomyces cerevisiae . EMBO J. 4 : 3549 - 3552 . (10.1002/j.1460-2075.1985.tb04115.x) / EMBO J. / Nucleotide sequence of the RADIO gene of Saccharomyces cerevisiae by Reynolds P. (1985)
  45. Reynolds , P. , L. Prakash , and S. Prakash . 1987 . Nucleotide sequence and functional analysis of the RADI gene of Saccharomyces cerevisiae . Mol. Cell. Biol. 7 : 1012 - 1020 . (10.1128/MCB.7.3.1012) / Mol. Cell. Biol. / Nucleotide sequence and functional analysis of the RADI gene of Saccharomyces cerevisiae by Reynolds P. (1987)
  46. Robinson , G. , C. Nicolet , D. Kalainov , and E. Friedberg . 1986 . A yeast excision-repair gene is inducible by DNA damaging agents . Proc. Natl. Acad. Sci. USA 83 : 1842 - 1846 . (10.1073/pnas.83.6.1842) / Proc. Natl. Acad. Sci. USA / A yeast excision-repair gene is inducible by DNA damaging agents by Robinson G. (1986)
  47. Rothstein , R. J. 1983 . One-step gene disruption in yeast . Methods Enzymol. 101 : 202 - 211 . (10.1016/0076-6879(83)01015-0) / Methods Enzymol. / One-step gene disruption in yeast by Rothstein R. J. (1983)
  48. Ruby , S. W. , and J. W. Szostak . 1985 . Specific Saccharomyces cerevisiae genes are expressed in response to DNA-damaging agents . Mol. Cell. Biol. 5 : 75 - 84 . (10.1128/MCB.5.1.75) / Mol. Cell. Biol. / Specific Saccharomyces cerevisiae genes are expressed in response to DNA-damaging agents by Ruby S. W. (1985)
  49. Sanger , F. , S. Nicklen , and A. R. Coulson . 1977 . DNA sequencing with chain-terminating inhibitors . Proc. Natl. Acad. Sci. USA 74 : 5463 - 5467 . (10.1073/pnas.74.12.5463) / Proc. Natl. Acad. Sci. USA / DNA sequencing with chain-terminating inhibitors by Sanger F. (1977)
  50. Scherer , S. , and R. W. Davis . 1979 . Replacement of chromosome segments with altered DNA sequences constructed in vitro . Proc. Natl. Acad. Sci. USA 74 : 5463 - 5467 . / Proc. Natl. Acad. Sci. USA / Replacement of chromosome segments with altered DNA sequences constructed in vitro by Scherer S. (1979)
  51. Sclafani , R. A. , M. Patterson , J. Rosamond , and W. L. Fangman . 1988 . Differential regulation of the yeast CDC7 gene during mitosis and meiosis . Mol. Cell. Biol. 8 : 293 - 300 . (10.1128/MCB.8.1.293) / Mol. Cell. Biol. / Differential regulation of the yeast CDC7 gene during mitosis and meiosis by Sclafani R. A. (1988)
  52. Sherman F. G. R. Fink and J. B. Hicks. 1986. Methods in yeast genetics. Cold Spring Harbor Laboratory Cold Spring Harbor N.Y.
  53. Siede , W. , and F. Eckardt-Schupp . 1986 . DNA repair genes of Saccharomyces cerevisiae: complementing rad 4 and rev 2 mutations by plasmids which cannot be propagated in Escherichia coli . Curr. Genet. 11 : 205 - 210 . (10.1007/BF00420608) / Curr. Genet. / DNA repair genes of Saccharomyces cerevisiae: complementing rad 4 and rev 2 mutations by plasmids which cannot be propagated in Escherichia coli by Siede W. (1986)
  54. Stephens , R. M. 1985 . A sequencers' sequence analysis package for the IBM PC . Gene Anal. Technol. 2 : 67 - 75 . (10.1016/0735-0651(85)90018-4) / Gene Anal. Technol. / A sequencers' sequence analysis package for the IBM PC by Stephens R. M. (1985)
  55. Struhl , K. 1985 . Naturally occurring poly (dA-dT) sequences are upstream promoter elements for constitutive transcription in yeast . Proc. Natl. Acad. Sci. USA 82 : 8419 - 8423 . (10.1073/pnas.82.24.8419) / Proc. Natl. Acad. Sci. USA / Naturally occurring poly (dA-dT) sequences are upstream promoter elements for constitutive transcription in yeast by Struhl K. (1985)
  56. Walker , G. C. 1984 . Mutagenesis and inducible responses to deoxyribonucleic acid damage in Escherichia coli . Microbiol. Rev. 48 : 60 - 93 . (10.1128/MR.48.1.60-93.1984) / Microbiol. Rev. / Mutagenesis and inducible responses to deoxyribonucleic acid damage in Escherichia coli by Walker G. C. (1984)
  57. Yanisch-Perron , C. , J. Vieira , and J. Messing . 1985 . Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mpl 8 and pUC19 vectors . Gene 33 : 103 - 119 . (10.1016/0378-1119(85)90120-9) / Gene / Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mpl 8 and pUC19 vectors by Yanisch-Perron C. (1985)
Dates
Type When
Created 8 years, 10 months ago (Nov. 4, 2016, 1:33 p.m.)
Deposited 4 years, 1 month ago (July 29, 2021, 1:42 p.m.)
Indexed 1 year, 1 month ago (July 25, 2024, 1:09 p.m.)
Issued 36 years, 8 months ago (Jan. 1, 1989)
Published 36 years, 8 months ago (Jan. 1, 1989)
Published Print 36 years, 8 months ago (Jan. 1, 1989)
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@article{Larimer_1989, title={The REV1 gene of Saccharomyces cerevisiae: isolation, sequence, and functional analysis}, volume={171}, ISSN={1098-5530}, url={http://dx.doi.org/10.1128/jb.171.1.230-237.1989}, DOI={10.1128/jb.171.1.230-237.1989}, number={1}, journal={Journal of Bacteriology}, publisher={American Society for Microbiology}, author={Larimer, F W and Perry, J R and Hardigree, A A}, year={1989}, month=jan, pages={230–237} }