Crossref journal-article
American Society for Microbiology
Journal of Bacteriology (235)
Abstract

Structural genes for catechol 2,3-oxygenase (C23O) were cloned from the TOL plasmids pWW5, pWW14, pWW74, pWW84, and pWW88 isolated from Pseudomonas strains of diverse geographical origins. Each pKT230-based C23O+ recombinant plasmid carried a 2.05-kilobase XhoI insert which showed strong homology in Southern hybridizations with the xylE gene from the archetype TOL plasmid pWW0. Fragments were mapped for restriction endonuclease sites and were classified into two closely related groups on the basis of restriction maps. C23O structural genes were located on cloned fragments by a combination of subcloning and site-specific mutagenesis. All five TOL plasmids examined yielded clones whose maps differed from that of xylE of pWW0 by only a single XbaI site, but in addition plasmids pWW5, pWW74, and pWW88 carried a second, homologous C23O gene with seven further restriction site differences. The remaining plasmids, pWW14 and pWW84, carried a second nonhomologous C23O gene related to the second C23O gene (C23OII) of TOL plasmid pWW15 described previously (H. Keil, M. R. Lebens, and P. A. Williams, J. Bacteriol. 163:248-255, 1985). Thus, each naturally occurring TOL plasmid in this study appears to carry genes for two meta cleavage dioxygenases.

Bibliography

Chatfield, L. K., & Williams, P. A. (1986). Naturally occurring TOL plasmids in Pseudomonas strains carry either two homologous or two nonhomologous catechol 2,3-oxygenase genes. Journal of Bacteriology, 168(2), 878–885.

Authors 2
  1. L K Chatfield (first)
  2. P A Williams (additional)
References 40 Referenced 39
  1. Bachmann , B. J. 1972 . Pedigrees of some mutant strains of Escherichia coli K-12 . Bacteriol. Rev. 36 : 525 - 557 . (10.1128/br.36.4.525-557.1972) / Bacteriol. Rev. / Pedigrees of some mutant strains of Escherichia coli K-12 by Bachmann B. J. (1972)
  2. Bagdasarian , M. , F. C. H. Franklin , R. Lurz , B. Ruckert , M. M. Bagdasarian , and K. Timmis . 1981 . Specific purpose plasmid cloning vectors. II. Broad host range, high copy number, RSF1010-derived vectors, and a host-vector system for gene cloning in Pseudomonas . Gene 16 : 237 - 247 . (10.1016/0378-1119(81)90080-9) / Gene / Specific purpose plasmid cloning vectors. II. Broad host range, high copy number, RSF1010-derived vectors, and a host-vector system for gene cloning in Pseudomonas by Bagdasarian M. (1981)
  3. Barth , P. T. , and N. J. Grinter . 1975 . Assay of deoxyribonucleic acid homology using a single-strand-specific nuclease at 75°C . J. Bacteriol. 121 : 434 441. (10.1128/jb.121.2.434-441.1975) / J. Bacteriol. / Assay of deoxyribonucleic acid homology using a single-strand-specific nuclease at 75°C by Barth P. T. (1975)
  4. Bolivar , F. , R. L. Rodriguez , P. J. Greene , M. C. Betlach , H. L. Heynecker , H. W. Boyer , J. J. Crosa , and S. Falkow . 1977 . Construction and characterization of new cloning vehicles. II. A multi-purpose cloning system . Gene 2 : 95 - 113 . (10.1016/0378-1119(77)90000-2) / Gene / Construction and characterization of new cloning vehicles. II. A multi-purpose cloning system by Bolivar F. (1977)
  5. Cohen , S. N. , A. C. Y. Chang , and L. Hsu . 1972 . Non-chromosomal antibiotic resistance in bacteria: genetic transformation of Escherichia coli by R factor DNA . Proc. Natl. Acad. Sci. USA 69 : 2110 - 2114 . (10.1073/pnas.69.8.2110) / Proc. Natl. Acad. Sci. USA / Non-chromosomal antibiotic resistance in bacteria: genetic transformation of Escherichia coli by R factor DNA by Cohen S. N. (1972)
  6. Dagley , S. , and D. T. Gibson . 1965 . The bacterial degradation of catechol . Biochem. J. 95 : 466 - 474 . (10.1042/bj0950466) / Biochem. J. / The bacterial degradation of catechol by Dagley S. (1965)
  7. Duggleby , C. J. , S. A. Bayley , M. J. Worsey , P. A. Williams , and P. Broda . 1977 . Molecular sizes and relationships of TOL plasmids in Pseudomonas . J. Bacteriol. 130 : 1274 - 1280 . (10.1128/JB.130.3.1274-1280.1977) / J. Bacteriol. / Molecular sizes and relationships of TOL plasmids in Pseudomonas by Duggleby C. J. (1977)
  8. FranklIn , F. C. H. , M. Bagdasarian , M. M. Bagdasarian , and K. N. Timmis . 1981 . Molecular and functional analysis of the TOL plasmid pWWO from Pseudomonas putida and cloning of genes for the entire regulated aromatic ring meta cleavage pathway . Proc. Natl. Acad. Sci. USA 78 : 7458 - 7462 . (10.1073/pnas.78.12.7458) / Proc. Natl. Acad. Sci. USA / Molecular and functional analysis of the TOL plasmid pWWO from Pseudomonas putida and cloning of genes for the entire regulated aromatic ring meta cleavage pathway by FranklIn F. C. H. (1981)
  9. Girvitz , S. C. , S. Bacchetti , A. J. Rainbow , and F. W. Graham . 1980 . A rapid and efficient procedure for the purification of DNA from agarose gels . Anal. Biochem. 106 : 492 - 496 . (10.1016/0003-2697(80)90553-9) / Anal. Biochem. / A rapid and efficient procedure for the purification of DNA from agarose gels by Girvitz S. C. (1980)
  10. Guerry , P. , D. J. LeBlanc , and S. Falkow . 1973 . General method for the isolation of plasmid deoxyribonucleic acid . J. Bacteriol. 116 : 1064 - 1066 . (10.1128/JB.116.2.1064-1066.1973) / J. Bacteriol. / General method for the isolation of plasmid deoxyribonucleic acid by Guerry P. (1973)
  11. Harayama , S. , P. R. Lehrbach , and K. N. Timmis . 1984 . Transposon mutagenesis analysis of meta-cleavage pathway operon genes of the TOL plasmid of Pseudomonas putida mt-2 . J. Bacteriol. 160 : 251 - 255 . (10.1128/jb.160.1.251-255.1984) / J. Bacteriol. / Transposon mutagenesis analysis of meta-cleavage pathway operon genes of the TOL plasmid of Pseudomonas putida mt-2 by Harayama S. (1984)
  12. Holmes , D. S. , and M. Quigley . 1981 . A rapid boiling method for the preparation of bacterial plasmids . Anal. Biochem. 114 : 193 - 197 . (10.1016/0003-2697(81)90473-5) / Anal. Biochem. / A rapid boiling method for the preparation of bacterial plasmids by Holmes D. S. (1981)
  13. Inouye , S. , A. Nakazawa , and T. Nakazawa . 1984 . Nucleotide sequence of the promoter region of the xyIDEGF operon on TOL plasmid of Pseudomonas putida . Gene 29 : 323 - 330 . (10.1016/0378-1119(84)90061-1) / Gene / Nucleotide sequence of the promoter region of the xyIDEGF operon on TOL plasmid of Pseudomonas putida by Inouye S. (1984)
  14. Jeenes , D. J. , and P. A. Williams . 1982 . Excision and integration of degradative pathway genes from TOL plasmid pWWO . J. Bacteriol. 150 : 188 - 194 . (10.1128/jb.150.1.188-194.1982) / J. Bacteriol. / Excision and integration of degradative pathway genes from TOL plasmid pWWO by Jeenes D. J. (1982)
  15. Keil , H. , S. Keil , R. W. Pickup , and P. A. Williams . 1985 . Evolutionary conservation of genes coding for meta pathway enzymes within TOL plasmids pWWO and pWW53 . J. Bacteriol. 164 : 887 - 895 . (10.1128/jb.164.2.887-895.1985) / J. Bacteriol. / Evolutionary conservation of genes coding for meta pathway enzymes within TOL plasmids pWWO and pWW53 by Keil H. (1985)
  16. Keil , H. , M. R. Lebens , and P. A. Williams . 1985 . TOL plasmid pWW15 contains two nonhomologous, independently regulated catechol 2,3-oxygenase genes . J. Bacteriol. 163 : 248 - 255 . (10.1128/JB.163.1.248-255.1985) / J. Bacteriol. / TOL plasmid pWW15 contains two nonhomologous, independently regulated catechol 2,3-oxygenase genes by Keil H. (1985)
  17. Keil , H. , and P. A. Williams . 1985 . A new class of TOL plasmid deletion mutants in Pseudomonas putida MT15 and their reversion by tandem gene amplification . J. Gen. Microbiol. 131 : 1023 - 1033 . / J. Gen. Microbiol. / A new class of TOL plasmid deletion mutants in Pseudomonas putida MT15 and their reversion by tandem gene amplification by Keil H. (1985)
  18. King , E. O. , M. K. Ward , and D. E. Raney . 1954 . Simple method for the demonstration of pyocyanin and fluorescin . J. Lab. Clin. Med. 44 : 301 - 307 . / J. Lab. Clin. Med. / Simple method for the demonstration of pyocyanin and fluorescin by King E. O. (1954)
  19. Kunz , D. A. , and P. J. Chapman . 1981 . Isolation and characterization of spontaneously occurring TOL plasmid mutants of Pseudomonas putida HS1 . J. Bacteriol. 146 : 952 - 964 . (10.1128/jb.146.3.952-964.1981) / J. Bacteriol. / Isolation and characterization of spontaneously occurring TOL plasmid mutants of Pseudomonas putida HS1 by Kunz D. A. (1981)
  20. Meulien , P. , and P. Broda . 1982 . Identification of chromosomally integrated TOL DNA in cured derivatives of Pseudomonas putida PaWl . J. Bacteriol. 152 : 911 - 914 . (10.1128/jb.152.2.911-914.1982) / J. Bacteriol. / Identification of chromosomally integrated TOL DNA in cured derivatives of Pseudomonas putida PaWl by Meulien P. (1982)
  21. Nakai , C. , H. Kagamiyama , M. Nozaki , T. Nakazawa , S. Inouye , Y. Ebina , and A. Nakazawa . 1983 . Complete nucleotide sequence of the metapyrocatechase gene on the TOL plasmid of Pseudomonas putida mt-2 . J. Biol. Chem. 258 : 2923 - 2928 . (10.1016/S0021-9258(18)32807-2) / J. Biol. Chem. / Complete nucleotide sequence of the metapyrocatechase gene on the TOL plasmid of Pseudomonas putida mt-2 by Nakai C. (1983)
  22. Nakazawa , T. , E. Hayashi , T. Yokota , Y. Ebina , and A. Nakazawa . 1978 . Isolation of TOL and RP4 recombinants by integrative suppression . J. Bacteriol. 134 : 270 - 277 . (10.1128/JB.134.1.270-277.1978) / J. Bacteriol. / Isolation of TOL and RP4 recombinants by integrative suppression by Nakazawa T. (1978)
  23. Negoro , S. , T. Taniguchi , M. Kanaoka , H. Kimura , and H. Okada . 1983 . Plasmid-determined enzymatic degradation of nylon oligomers . J. Bacteriol. 155 : 22 - 31 . (10.1128/JB.155.1.22-31.1983) / J. Bacteriol. / Plasmid-determined enzymatic degradation of nylon oligomers by Negoro S. (1983)
  24. Okada , H. , S. Negoro , H. Kimura , and S. Nakamura . 1983 . Evolutionary adaptation of plasmid-encoded enzymes for degrading nylon oligomers . Nature (London) 306 : 203 - 206 . (10.1038/306203a0) / Nature (London) / Evolutionary adaptation of plasmid-encoded enzymes for degrading nylon oligomers by Okada H. (1983)
  25. Pankhurst , E. S. 1965 . A spot test for catechol 2:3-oxygenase in bacteria . J. Appl. Bacteriol. 28 : 309 - 315 . (10.1111/j.1365-2672.1965.tb02158.x) / J. Appl. Bacteriol. / A spot test for catechol 2:3-oxygenase in bacteria by Pankhurst E. S. (1965)
  26. Pickup , R. W. , R. J. Lewis , and P. A. Williams . 1983 . Pseudomonas sp. MT14, a soil isolate which contains two large catabolic plasmids, one a TOL plasmid and one coding for phenylacetate catabolism and mercury resistance . J. Gen. Microbiol. 129 : 153 - 158 . / J. Gen. Microbiol. / Pseudomonas sp. MT14, a soil isolate which contains two large catabolic plasmids, one a TOL plasmid and one coding for phenylacetate catabolism and mercury resistance by Pickup R. W. (1983)
  27. Pickup , R. W. , and P. A. Williams . 1982 . Spontaneous deletions in the TOL plasmid pWW20 which give rise to the B3 regulatory mutants of Pseudomonas putida MT20 . J. Gen. Microbiol. 128 : 1385 - 1390 . / J. Gen. Microbiol. / Spontaneous deletions in the TOL plasmid pWW20 which give rise to the B3 regulatory mutants of Pseudomonas putida MT20 by Pickup R. W. (1982)
  28. Reanney , D. 1976 . Extrachromosomal elements as possible agents of adaptation and development . Bacteriol. Rev. 40 : 552 - 590 . (10.1128/br.40.3.552-590.1976) / Bacteriol. Rev. / Extrachromosomal elements as possible agents of adaptation and development by Reanney D. (1976)
  29. Roussel , A. F. , and Y. A. Chabbert . 1978 . Taxonomy and epidemiology of gram-negative bacterial plasmids studied by DNA-DNA filter hybridization in formamide . J. Gen. Microbiol. 104 : 269 - 276 . (10.1099/00221287-104-2-269) / J. Gen. Microbiol. / Taxonomy and epidemiology of gram-negative bacterial plasmids studied by DNA-DNA filter hybridization in formamide by Roussel A. F. (1978)
  30. Soberon , X. , L. Covarrubias , and F. Bolivar . 1980 . Construction and characterization of new cloning vehicles. IV. Deletion derivatives of pBR322 and pBR325 . Gene 9 : 287 - 305 . (10.1016/0378-1119(90)90328-O) / Gene / Construction and characterization of new cloning vehicles. IV. Deletion derivatives of pBR322 and pBR325 by Soberon X. (1980)
  31. Southern , E. M. 1975 . Detection of specific sequences among DNA fragments separated by gel electrophoresis . J. Mol. Biol. 98 : 503 - 517 . (10.1016/S0022-2836(75)80083-0) / J. Mol. Biol. / Detection of specific sequences among DNA fragments separated by gel electrophoresis by Southern E. M. (1975)
  32. Wheatcroft , R. , and P. A. Williams . 1981 . Rapid methods for the study of both stable and unstable plasmids in Pseudomonas . J. Gen. Microbiol. 124 : 433 - 437 . / J. Gen. Microbiol. / Rapid methods for the study of both stable and unstable plasmids in Pseudomonas by Wheatcroft R. (1981)
  33. White , G. P. , and N. W. Dunn . 1977 . Apparent fusion of the TOL plasmid with the R91 drug resistance plasmid in Pseudomonas aeruginosa . Aust. J. Biol. Sci. 30 : 345 - 355 . (10.1071/BI9770345) / Aust. J. Biol. Sci. / Apparent fusion of the TOL plasmid with the R91 drug resistance plasmid in Pseudomonas aeruginosa by White G. P. (1977)
  34. Williams , P. A. , and K. Murray . 1974 . Metabolism of benzoate and the methylbenzoates by Pseudomonas putida (arvilla) mt-2: evidence for the existence of a TOL plasmid . J. Bacteriol. 120 : 416 - 423 . (10.1128/JB.120.1.416-423.1974) / J. Bacteriol. / Metabolism of benzoate and the methylbenzoates by Pseudomonas putida (arvilla) mt-2: evidence for the existence of a TOL plasmid by Williams P. A. (1974)
  35. Williams , P. A. , and M. J. Worsey . 1976 . Ubiquity of plasmids in coding for toluene and xylene metabolism in soil bacteria: evidence for the existence of new TOL plasmids . J. Bacteriol. 125 : 818 - 828 . (10.1128/jb.125.3.818-828.1976) / J. Bacteriol. / Ubiquity of plasmids in coding for toluene and xylene metabolism in soil bacteria: evidence for the existence of new TOL plasmids by Williams P. A. (1976)
  36. Williams , P. A. , and M. J. Worsey . 1976 . Plasmids and catabolism . Biochem. Soc. Trans. 4 : 466 - 468 . (10.1042/bst0040466) / Biochem. Soc. Trans. / Plasmids and catabolism by Williams P. A. (1976)
  37. Worsey , M. J. , and P. A. Williams . 1975 . Metabolism of toluene and xylenes by Pseudomonas putida (arvilla) mt-2: evidence for a new function of the TOL plasmid . J. Bacteriol. 124 : 7 - 13 . (10.1128/JB.124.1.7-13.1975) / J. Bacteriol. / Metabolism of toluene and xylenes by Pseudomonas putida (arvilla) mt-2: evidence for a new function of the TOL plasmid by Worsey M. J. (1975)
  38. Worsey , M. J. , and P. A. Williams . 1977 . Characterization of a spontaneously occurring mutant of the TOL20 plasmid in Pseudomonas putida MT20: possible regulatory implications . J. Bacteriol. 130 : 1149 - 1158 . (10.1128/JB.130.3.1149-1158.1977) / J. Bacteriol. / Characterization of a spontaneously occurring mutant of the TOL20 plasmid in Pseudomonas putida MT20: possible regulatory implications by Worsey M. J. (1977)
  39. Yano , K. , and T. Nishi . 1980 . pKJ1, a naturally occurring conjugative plasmid coding for toluene degradation and resistance to streptomycin and sulfonamides . J. Bacteriol. 143 : 552 - 560 . (10.1128/jb.143.2.552-560.1980) / J. Bacteriol. / pKJ1, a naturally occurring conjugative plasmid coding for toluene degradation and resistance to streptomycin and sulfonamides by Yano K. (1980)
  40. Zukowski , M. M. , D. F. Gaffney , D. Speck , M. Kauffmann , A. Findeli , A. Wisecup , and J. -P. Lecocq . 1983 . Chromogenic identification of genetic regulatory signals in Bacillus subtilis based on expression of a cloned Pseudomonas gene . Proc. Natl. Acad. Sci. USA 80 : 1101 - 1105 . (10.1073/pnas.80.4.1101) / Proc. Natl. Acad. Sci. USA / Chromogenic identification of genetic regulatory signals in Bacillus subtilis based on expression of a cloned Pseudomonas gene by Zukowski M. M. (1983)
Dates
Type When
Created 8 years, 8 months ago (Dec. 15, 2016, 7:43 p.m.)
Deposited 4 years, 1 month ago (July 29, 2021, 1:34 p.m.)
Indexed 1 year, 5 months ago (March 20, 2024, 5:58 a.m.)
Issued 38 years, 10 months ago (Nov. 1, 1986)
Published 38 years, 10 months ago (Nov. 1, 1986)
Published Print 38 years, 10 months ago (Nov. 1, 1986)
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@article{Chatfield_1986, title={Naturally occurring TOL plasmids in Pseudomonas strains carry either two homologous or two nonhomologous catechol 2,3-oxygenase genes}, volume={168}, ISSN={1098-5530}, url={http://dx.doi.org/10.1128/jb.168.2.878-885.1986}, DOI={10.1128/jb.168.2.878-885.1986}, number={2}, journal={Journal of Bacteriology}, publisher={American Society for Microbiology}, author={Chatfield, L K and Williams, P A}, year={1986}, month=nov, pages={878–885} }