Abstract
Expression of the pyrBI operon of Escherichia coli K-12, which encodes the subunits of the pyrimidine biosynthetic enzyme aspartate transcarbamylase, is negatively regulated by the intracellular levels of UTP. Previous experiments suggested a unique model for regulation of operon expression in which low UTP levels cause close coupling of transcription and translation of the pyrBI leader region. This close coupling suppresses transcriptional termination at an attenuator preceding the structural genes. In this study, we examined the regulatory role of translation and attenuation in operon expression. To determine whether the leader region is translated, we constructed a plasmid, designated pBHM17, in which the pyrBI promoter(s) and the first 11 codons for a putative 44-amino acid leader polypeptide are fused to codon 9 of lacZ. A transformant carrying this plasmid synthesized a beta-galactosidase fusion protein with the amino-terminal sequence of the leader polypeptide, demonstrating that the signals required for leader polypeptide synthesis function in vivo. Synthesis of the fusion protein was nearly insensitive to pyrimidine availability. In uracil-grown cells, the level of fusion protein synthesis encoded by plasmid pBHM17 was much greater than that encoded by a similar plasmid containing a pyrB::lacZ gene fusion, in which the pyrBI promoter-regulatory region is intact. These results indicate that the downstream leader sequence which includes the attenuator is required for regulation and functions as a transcriptional barrier. Oligonucleotide-directed mutagenesis was used to change the ATG leader polypeptide initiation codon of the intact pyrBI operon to ACG, which was shown to strongly inhibit translational initiation. This mutation greatly reduced operon expression and regulation as predicted by the attenuation control model.
References
36
Referenced
70
-
Alper , M. D. , and B. N. Ames . 1978 . Transport of antibiotics and metabolite analogs by systems under cyclic AMP control: positive selection of Salmonella typhimurium cya and crp mutants . J. Bacteriol. 133 : 149 - 157 .
(
10.1128/jb.133.1.149-157.1978
) / J. Bacteriol. / Transport of antibiotics and metabolite analogs by systems under cyclic AMP control: positive selection of Salmonella typhimurium cya and crp mutants by Alper M. D. (1978) -
Ames , G. F. - L. 1974 . Resolution of bacterial proteins by polyacrylamide gel electrophoresis on slabs. Membrane, soluble, and periplasmic fractions . J. Biol. Chem. 249 : 634 - 644 .
(
10.1016/S0021-9258(19)43074-3
) / J. Biol. Chem. / Resolution of bacterial proteins by polyacrylamide gel electrophoresis on slabs. Membrane, soluble, and periplasmic fractions by Ames G. F. (1974) -
Benson , S. A. , E. Bremer , and T. J. Silhavy . 1984 . Intragenic regions required for LamB export . Proc. Natl. Acad. Sci. U.S.A. 81 : 3830 - 3834 .
(
10.1073/pnas.81.12.3830
) / Proc. Natl. Acad. Sci. U.S.A. / Intragenic regions required for LamB export by Benson S. A. (1984) -
Birnboim , H. C. , and J. Doly . 1979 . A rapid alkaline extraction procedure for screening recombinant plasmid DNA . Nucleic Acids Res. 7 : 1513 - 1523 .
(
10.1093/nar/7.6.1513
) / Nucleic Acids Res. / A rapid alkaline extraction procedure for screening recombinant plasmid DNA by Birnboim H. C. (1979) -
Bolivar , F. , R. L. Rodriguez , P. J. Greene , M. C. Betlach , H. L. Heyneker , H. W. Boyer , J. H. Crosa , and S. Falkow . 1977 . Construction and characterization of new cloning vehicles. II. A multipurpose cloning system . Gene 2 : 95 - 113 .
(
10.1016/0378-1119(77)90000-2
) / Gene / Construction and characterization of new cloning vehicles. II. A multipurpose cloning system by Bolivar F. (1977) -
Bradford , M. M. 1976 . A rapid and sensitive method for quantitation of microgram quantities of protein using the principle of protein-dye binding . Anal. Biochem. 72 : 248 - 254 .
(
10.1016/0003-2697(76)90527-3
) / Anal. Biochem. / A rapid and sensitive method for quantitation of microgram quantities of protein using the principle of protein-dye binding by Bradford M. M. (1976) -
Casadaban , M. J. , and S. N. Cohen . 1979 . Lactose genes fused to exogenous promoters in one step using a Mu-lac bacteriophage: in vivo probe for transcriptional control sequences . Proc. Natl. Acad. Sci. U.S.A. 76 : 4530 - 4533 .
(
10.1073/pnas.76.9.4530
) / Proc. Natl. Acad. Sci. U.S.A. / Lactose genes fused to exogenous promoters in one step using a Mu-lac bacteriophage: in vivo probe for transcriptional control sequences by Casadaban M. J. (1979) -
Csonka , L. N. , M. M. Howe , J. L. Ingraham , L. S. Pierson III , and C. L. Turnbough , Jr. 1981 . Infection of Salmonella typhimurium with coliphage Mu dl (Apr lac): construction of pyr::lac gene fusions . J. Bacteriol. 145 : 299 - 305 .
(
10.1128/jb.145.1.299-305.1981
) / J. Bacteriol. / Infection of Salmonella typhimurium with coliphage Mu dl (Apr lac): construction of pyr::lac gene fusions by Csonka L. N. (1981) - Davis R. W. D. Botstein and J. R. Roth. 1980. Advanced bacterial genetics. Cold Spring Harbor Laboratory Cold Spring Harbor N.Y.
-
Dunn , J. J. , E. Buzash-Pollert , and F. W. Studier . 1978 . Mutations of bacteriophage T7 that affect initiation of synthesis of the gene 0.3 protein . Proc. Natl. Acad. Sci. U.S.A. 75 : 2741 - 2745 .
(
10.1073/pnas.75.6.2741
) / Proc. Natl. Acad. Sci. U.S.A. / Mutations of bacteriophage T7 that affect initiation of synthesis of the gene 0.3 protein by Dunn J. J. (1978) -
Gait , M. J. , M. Singh , R. C. Sheppard , M. D. Edge , A. R. Greene , G. R. Heathcliffe , T. C. Atkinson , C. R. Newton , and A. F. Markham . 1980 . Rapid synthesis of oligodeoxyribonucleotides. IV. Improved solid phase synthesis of oligodeoxyribonucleotides through phosphotriester intermediates . Nucleic Acids Res. 8 : 1081 - 1096 .
(
10.1093/nar/8.5.1081
) / Nucleic Acids Res. / Rapid synthesis of oligodeoxyribonucleotides. IV. Improved solid phase synthesis of oligodeoxyribonucleotides through phosphotriester intermediates by Gait M. J. (1980) -
Hewick , R. M. , M. W. Hunkapiller , L. E. Hood , and W. J. Dreyer . 1981 . A gas-liquid solid phase peptide and protein sequenator . J. Biol. Chem. 256 : 7990 - 7997 .
(
10.1016/S0021-9258(18)43377-7
) / J. Biol. Chem. / A gas-liquid solid phase peptide and protein sequenator by Hewick R. M. (1981) -
Hines , J. C. , and D. S. Ray . 1980 . Construction and characterization of new coliphage M13 cloning vectors . Gene 11 : 207 - 218 .
(
10.1016/0378-1119(80)90061-X
) / Gene / Construction and characterization of new coliphage M13 cloning vectors by Hines J. C. (1980) - Jagu ztyn-Krynicka, E. K. , M. Smorawinska , and R. Curtiss Im . 1982 . Expression of Streptococcus mutans aspartatesetmialdehyde dehydrogenase gene cloned into plasmid pBR322 . J. Gen. Microbiol. 128 : 1135 - 1145 . / J. Gen. Microbiol. / Expression of Streptococcus mutans aspartatesetmialdehyde dehydrogenase gene cloned into plasmid pBR322 by Jagu E. K. (1982)
-
Kalnins ,- A. , K. Otto , U. Rfither , and B. Muller-Hill . 1983 . Sequence of the lacZ gene of Escherichia coli . EMBO J. 2 : 593 - 597 .
(
10.1002/j.1460-2075.1983.tb01468.x
) / EMBO J. / Sequence of the lacZ gene of Escherichia coli by Kalnins A. (1983) -
Kozak , M. 1983 . Comparison of initiation of protein synthesis in procaryotes, eucaryotes, and organelles . Microbiol. Rev. 47 : 1 - 45 ;
(
10.1128/mr.47.1.1-45.1983
) / Microbiol. Rev. / Comparison of initiation of protein synthesis in procaryotes, eucaryotes, and organelles by Kozak M. (1983) -
Laemmli , U. K. 1970 . Cleavage of structural proteins during the assembly of the head of bacteriophage T4 . Nature (London) 227 : 680 - 685 .
(
10.1038/227680a0
) / Nature (London) / Cleavage of structural proteins during the assembly of the head of bacteriophage T4 by Laemmli U. K. (1970) -
Lowry , 0. H. , N. J. Rosebrough , A. L. Farr , and R. J. Randall . 1951 . Protein measurement with the Folin phenol reagent . J. Biol. Chem. 193 : 265 - 275 .
(
10.1016/S0021-9258(19)52451-6
) / J. Biol. Chem. / Protein measurement with the Folin phenol reagent by Lowry 0. (1951) -
Maxam , A. M. , and W. Gilbert . 1980 . Sequencing end 4labeled DNA with base-specific chemical cleavages . Methods Enzymol. 65 : 499 - 560 .
(
10.1016/S0076-6879(80)65059-9
) / Methods Enzymol. / Sequencing end 4labeled DNA with base-specific chemical cleavages by Maxam A. M. (1980) -
McDonnell , M. W. , M. N. Simon , and F. W. Studier . 1977 . Analysis of restriction fragments of T7 DNA and determination of molecular weights by electrophoresis in neutral and alkaline gels . J. Mol. Biol. 110 : 119 - 146 .
(
10.1016/S0022-2836(77)80102-2
) / J. Mol. Biol. / Analysis of restriction fragments of T7 DNA and determination of molecular weights by electrophoresis in neutral and alkaline gels by McDonnell M. W. (1977) -
Messing , J. 1983 . New M13 vectors for cloning . Methods Enzymol. 101 : 20 - 78 .
(
10.1016/0076-6879(83)01005-8
) / Methods Enzymol. / New M13 vectors for cloning by Messing J. (1983) - Miller J. U. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory Cold Spring Harbor N.Y.
-
Morrison , D. A. 1979 . Transformation and preservation of competent bacterial cells by freezing . Methods Enzymol. 68 : 326 - 331 .
(
10.1016/0076-6879(79)68023-0
) / Methods Enzymol. / Transformation and preservation of competent bacterial cells by freezing by Morrison D. A. (1979) -
Navre , M. , and H. K. Schachman . 1983 . Synthesis of aspartate transcarbamoylase in Escherichia coli: transcriptional regulation of the pyrB-pyrI operon . Proc. Natl. Acad. Sci. U.S.A. 80 : 1207 - 1211 .
(
10.1073/pnas.80.5.1207
) / Proc. Natl. Acad. Sci. U.S.A. / Synthesis of aspartate transcarbamoylase in Escherichia coli: transcriptional regulation of the pyrB-pyrI operon by Navre M. (1983) -
O'Donovan , G. A. , and J. Neuhard . 1970 . Pyrimidine metabolism in microorganisms . Bacteriol. Rev. 34 : 278 - 343 .
(
10.1128/br.34.3.278-343.1970
) / Bacteriol. Rev. / Pyrimidine metabolism in microorganisms by O'Donovan G. A. (1970) -
Pauza , C. D. , M. J. Karels , M. Navre , and H. K. Schachman . 1982 . Genes encoding Escherichia coli aspartate transcarbamoylase: the pyrB-pyrI operon . Proc. Natl. Acad. Sci. U.S.A. 79 : 4020 - 4024 .
(
10.1073/pnas.79.13.4020
) / Proc. Natl. Acad. Sci. U.S.A. / Genes encoding Escherichia coli aspartate transcarbamoylase: the pyrB-pyrI operon by Pauza C. D. (1982) -
Pierard , A. , N. Glansdorff , D. Gigot , M. Crabeel , P. Halleux , and L. Thiry . 1976 . Repression of Escherichia coli carbamoylphosphate synthase: relationships with enzyme synthesis in the arginine and pyrimidine pathways . J. Bacteriol. 127 : 291 - 301 .
(
10.1128/jb.127.1.291-301.1976
) / J. Bacteriol. / Repression of Escherichia coli carbamoylphosphate synthase: relationships with enzyme synthesis in the arginine and pyrimidine pathways by Pierard A. (1976) -
Roof , W. D. , K. F. Foltermann , and J. R. Wild . 1982 . The organization and regulation of the pyrBI operon in E. coli includes a rho-independent attenuator sequence . Mol. Gen. Genet. 187 : 391 - 400 .
(
10.1007/BF00332617
) / Mol. Gen. Genet. / The organization and regulation of the pyrBI operon in E. coli includes a rho-independent attenuator sequence by Roof W. D. (1982) -
Salser , W. 1977 . Globin mRNA sequences: analysis of base pairing jand evolutionary implications . Cold Spring Harbor Symp. Quant. Biol. 42 : 985 - 1002 .
(
10.1101/SQB.1978.042.01.099
) / Cold Spring Harbor Symp. Quant. Biol. / Globin mRNA sequences: analysis of base pairing jand evolutionary implications by Salser W. (1977) -
Sanger , F. , A. R. Coulson , B. G. Barrell , A. J. H. Smiith , and B. A. Roe . 1980 . Cloning in single-stranded bacteriophage as an aid to rapid DNA sequencing . J. Mol. Biol. 143 : 161 - 178 .
(
10.1016/0022-2836(80)90196-5
) / J. Mol. Biol. / Cloning in single-stranded bacteriophage as an aid to rapid DNA sequencing by Sanger F. (1980) -
Schwartz , M. , and J. Neuharcj . 1975 . Control of expression of the pyr genes in Salmonella typhimurium: effects of variations in uridine and cytidine nucleotide pools . J. Bacteriol. 121 : 814 - 822 .
(
10.1128/jb.121.3.814-822.1975
) / J. Bacteriol. / Control of expression of the pyr genes in Salmonella typhimurium: effects of variations in uridine and cytidine nucleotide pools by Schwartz M. (1975) - Silhavy T. J. M. L. Berman and L. W. Enquist. 1984. Experiments with gene fusions. Cold Spring Harbor Laboratory Cold Spring Harbor N.Y.
-
Turnbough , C. L. , Jr. 1983 . Rpgulation of Escherichia coli aspartate transcarbamylase synthesis by guanosine tetraphosphate and pyrimidine ribonucleoside triphosphates . J. Bacteriol. 153 : 998 - 1007 .
(
10.1128/jb.153.2.998-1007.1983
) / J. Bacteriol. / Rpgulation of Escherichia coli aspartate transcarbamylase synthesis by guanosine tetraphosphate and pyrimidine ribonucleoside triphosphates by Turnbough C. L. (1983) -
Turnbough , C. L. , Jr. , K. L. Hicks , and J. P. Donahue . 1983 . Attenuation control of pyrBI operon expression in Escherichia coli K-12 . Proc. Natl. Acad. Sci. U.S.A. 80 : 368 - 372 .
(
10.1073/pnas.80.2.368
) / Proc. Natl. Acad. Sci. U.S.A. / Attenuation control of pyrBI operon expression in Escherichia coli K-12 by Turnbough C. L. (1983) -
Winter , G. , S. Fields , M. J. bait, and G. G. Browsilee . 1981 . The use of synthetic oligodeoxynucleotide primers in cloning and sequencing segment 8 of influenza virus (A/PR/8/34) . Nucleic Acids Res. 9 : 237 - 245 .
(
10.1093/nar/9.2.237
) / Nucleic Acids Res. / The use of synthetic oligodeoxynucleotide primers in cloning and sequencing segment 8 of influenza virus (A/PR/8/34) by Winter G. (1981) -
ZoUer , M. J. , and M. Smith . 1983 . Oligonucleotide-directed mutagenesis of DNA fragments cloned into M13 vectors . Methods Enzymol. 100 : 468 - 500 .
(
10.1016/0076-6879(83)00074-9
) / Methods Enzymol. / Oligonucleotide-directed mutagenesis of DNA fragments cloned into M13 vectors by ZoUer M. J. (1983)
Dates
Type | When |
---|---|
Created | 5 years, 8 months ago (Jan. 3, 2020, 1:22 p.m.) |
Deposited | 4 years, 1 month ago (July 29, 2021, 1:29 p.m.) |
Indexed | 1 year, 7 months ago (Jan. 18, 2024, 12:24 a.m.) |
Issued | 40 years ago (Sept. 1, 1985) |
Published | 40 years ago (Sept. 1, 1985) |
Published Print | 40 years ago (Sept. 1, 1985) |
@article{Roland_1985, title={Role of translation and attenuation in the control of pyrBI operon expression in Escherichia coli K-12}, volume={163}, ISSN={1098-5530}, url={http://dx.doi.org/10.1128/jb.163.3.991-999.1985}, DOI={10.1128/jb.163.3.991-999.1985}, number={3}, journal={Journal of Bacteriology}, publisher={American Society for Microbiology}, author={Roland, K L and Powell, F E and Turnbough, C L}, year={1985}, month=sep, pages={991–999} }