Abstract
The isolation of several mutant strains blocked in l -lysine degradation has permitted an assessment of the physiological significance of enzymatic reactions related to lysine metabolism in Pseudomonas putida . Additional studies with intact cells involved labeling of metabolic intermediates from radioactive l - or d -lysine, and patterns of enzyme induction in both wild-type and mutant strains. These studies lead to the conclusions that from l -lysine, the obligatory pathway is via δ-aminovaleramide, δ-aminovalerate, glutaric semialdehyde, and glutarate, and that no alternative pathways from l -lysine exist in our strain. A distinct pathway from d -lysine proceeds via Δ 1 -piperideine-2-carboxylate, l -pipecolate, and Δ 1 -piperideine-6-carboxylate (α-aminoadipic semialdehyde). The two pathways are independent in the sense that certain mutants, unable to grow on l -lysine, grow at wild-type rates of d -lysine, utilizing the same intermediates as the wild type, as inferred from labeling studies. This finding implies that lysine racemase in our strain, while detectable in cell extracts, is not physiologically functional in intact cells at a rate that would permit growth of mutants blocked in the l -lysine pathway. Pipecolate oxidase, a d -lysine-related enzyme, is induced by d -lysine and less efficiently by l -lysine. Aminooxyacetate virtually abolishes the inducing activity of l -lysine for this enzyme, suggesting that lysine racemase, although functionally inactive for growth purposes, may still have regulatory significance in permitting cross-induction of d -lysine-related enzymes by l -lysine, and vice versa. This finding suggests a mechanism in bacteria for maintaining regulatory patterns in pathways that may have lost their capacity to support growth. In addition, enzymatic studies are reported which implicate Δ 1 -piperideine-2-carboxylate reductase as an early step in the d -lysine pathway.
References
43
Referenced
48
- Adams , E. 1959 . Hydroxyproline metabolism. I. Conversion to a-ketoglutarate by extracts of Pseudomonas . J. Biol. Chem. 234 : 2073 - 2084 . / J. Biol. Chem. / Hydroxyproline metabolism. I. Conversion to a-ketoglutarate by extracts of Pseudomonas by Adams E. (1959)
-
Adams E. and Y. F. Chang. 1971. Preparation and assay of glutaric semialdehyde p. 171-173. In H. Tabor and C. W. Tabor (ed.) Methods in enzymology vol. 17B. Academic Press Inc. New York.
(
10.1016/0076-6879(71)17037-1
) -
Adams E. and G. Rosso. 1967. a-Ketoglutaric semialdehyde dehydrogenase of Pseudomonas. Properties of the purified enzyme induced by hydroxyproline and of the 763
(
10.1016/S0021-9258(18)96073-4
) -
Adelberg , E. A. , M. Mandel , and G. C. C. Chen . 1965 . Optimal conditions for mutagenesis by N-methyl-N'- nitro-N-nitrosoguanidine in Escherichia coli K-12 . Biochem. Biophys. Res. Commun. 18 : 788 - 795 .
(
10.1016/0006-291X(65)90855-7
) / Biochem. Biophys. Res. Commun. / Optimal conditions for mutagenesis by N-methyl-N'- nitro-N-nitrosoguanidine in Escherichia coli K-12 by Adelberg E. A. (1965) -
Baginsky , M. L. , and V. W. Rodwell . 1966 . Metabolism of pipecolic acid in a Pseudomonas species. IV. Electron transport particle of Pseudomonas putida . J. Bacteriol. 92 : 424 - 432 .
(
10.1128/JB.92.2.424-432.1966
) / J. Bacteriol. / Metabolism of pipecolic acid in a Pseudomonas species. IV. Electron transport particle of Pseudomonas putida by Baginsky M. L. (1966) -
Baginsky , M. L. , and V. W. Rodwell . 1967 . Metabolism of pipecolic acid in a Pseudomonas species. V. Pipecolate oxidase and dehydrogenase . J. Bacteriol. 94 : 1034 - 1039 .
(
10.1128/JB.94.4.1034-1039.1967
) / J. Bacteriol. / Metabolism of pipecolic acid in a Pseudomonas species. V. Pipecolate oxidase and dehydrogenase by Baginsky M. L. (1967) - Basso , L. V. , D. R. Rao , and V. W. Rodwell . 1962 . Metabolism of pipecolic acid in a Pseudomonas species. II. Al-Piperideine-6-carboxylic acid and aaminoadipic acid b-semialdehyde . J. Biol. Chem. 237 : 2239 - 2245 . / J. Biol. Chem. / Metabolism of pipecolic acid in a Pseudomonas species. II. Al-Piperideine-6-carboxylic acid and aaminoadipic acid b-semialdehyde by Basso L. V. (1962)
-
Bray , G. E. 1960 . A simple efficient liquid scintillator for counting aqueous solutions in a liquid scintillation counter . Anal. Biochem. 1 : 279 - 285 .
(
10.1016/0003-2697(60)90025-7
) / Anal. Biochem. / A simple efficient liquid scintillator for counting aqueous solutions in a liquid scintillation counter by Bray G. E. (1960) -
Calvert , A. F. , and V. W. Rodwell . 1966 . Metabolism of pipecolic acid in a Pseudomonas species. III. L-a-Aminoadipate 5-semialdehyde: NAD oxidoreductase . J. Biol. Chem. 241 : 409 - 414 .
(
10.1016/S0021-9258(18)96932-2
) / J. Biol. Chem. / Metabolism of pipecolic acid in a Pseudomonas species. III. L-a-Aminoadipate 5-semialdehyde: NAD oxidoreductase by Calvert A. F. (1966) -
Chang , Y. F. , and Adams, E. 1971 . Induction of separate catabolic pathways for L- and D-lysine in Pseudomonas putida . Biochem. Biophys. Res. Commun. 45 : 570 - 577 .
(
10.1016/0006-291X(71)90455-4
) / Biochem. Biophys. Res. Commun. / Induction of separate catabolic pathways for L- and D-lysine in Pseudomonas putida by Chang Y. F. (1971) -
Chang Y. F. and Adams E. 1971. Glutaric semialdehyde dehydrogenase p. 166-171. In H. Tabor and C. W. Tabor (ed.) Methods in enzymology vol. 17 B. Academic Press Inc. New York.
(
10.1016/0076-6879(71)17036-X
) -
Chou , W. S. , L. W. Kesner , and H. Ghadimi . 1970 . Purity and purification of '4C-lysine . Anal. Biochem. 37 : 276 - 281 .
(
10.1016/0003-2697(70)90048-5
) / Anal. Biochem. / Purity and purification of '4C-lysine by Chou W. S. (1970) -
Cooksey , K. E. , and D. M. Greenberg . 1965 . Enzymic oxidation product of D-pipecolic acid . Arch. Biochem. Biophys. 112 : 238 - 242 .
(
10.1016/0003-9861(65)90041-X
) / Arch. Biochem. Biophys. / Enzymic oxidation product of D-pipecolic acid by Cooksey K. E. (1965) - Free , C. A. , M. Julius , P. Arnow , and G. T. Barry . 1967 . Inhibition of alanine racemase by aminooxyactic acid . Biochem. Biophys. Acta 146 : 608 - 610 . / Biochem. Biophys. Acta / Inhibition of alanine racemase by aminooxyactic acid by Free C. A. (1967)
-
Gryder , R. M. and E. Adams . 1969 . Inducible degradation of hydroxyproline in Pseudomonas putida: pathway regulation and hydroxyproline uptake . J. Bacteriol. 97 : 292 - 306 .
(
10.1128/JB.97.1.292-306.1969
) / J. Bacteriol. / Inducible degradation of hydroxyproline in Pseudomonas putida: pathway regulation and hydroxyproline uptake by Gryder R. M. (1969) -
Gryder , R. M. , and E. Adams . 1970 . Properties of the inducible hydroxyproline transport system of Pseudomonas putida . J. Bacteriol. 101 : 948 - 958 .
(
10.1128/JB.101.3.948-958.1970
) / J. Bacteriol. / Properties of the inducible hydroxyproline transport system of Pseudomonas putida by Gryder R. M. (1970) -
Hagihara , H. , H. Hayashi , A. Ichihara , and M. Suda . 1960 . Metabolism of L-lysine by bacterial enzymes. II. L-Lysine oxidase . J. Biochem. 48 : 267 - 276 .
(
10.1093/oxfordjournals.jbchem.a127168
) / J. Biochem. / Metabolism of L-lysine by bacterial enzymes. II. L-Lysine oxidase by Hagihara H. (1960) -
Hartline , R. A. , and V. W. Rodwell . 1971 . Metabolism of pipecolic acid in a Pseudomonas species. VI. Precursors of glutamate . Arch. Biochem. Biophys. 142 : 32 - 39 .
(
10.1016/0003-9861(71)90256-6
) / Arch. Biochem. Biophys. / Metabolism of pipecolic acid in a Pseudomonas species. VI. Precursors of glutamate by Hartline R. A. (1971) -
Hutzler , J. , M. Odievre , and J. Dancis . 1967 . Analysis for lysine, arginine, histidine and tyrosine in biological fluids . Anal. Biochem. 19 : 529 - 541 .
(
10.1016/0003-2697(67)90243-6
) / Anal. Biochem. / Analysis for lysine, arginine, histidine and tyrosine in biological fluids by Hutzler J. (1967) -
Ichihara , A. , S. Furiya , and M. Suda . 1960 . Metabolism of L-lysine by bacterial enzymes. III. Lysine racemase . J. Biochem. 48 : 277 - 282 .
(
10.1093/oxfordjournals.jbchem.a127169
) / J. Biochem. / Metabolism of L-lysine by bacterial enzymes. III. Lysine racemase by Ichihara A. (1960) -
Ichihara , A. , and E. A. Ichihara . 1961 . Metabolism of L-lysine by bacterial enzymes. V. Glutaric semialdehyde dehydrogenase . J. Biochem. 49 : 154 - 157 .
(
10.1093/oxfordjournals.jbchem.a127272
) / J. Biochem. / Metabolism of L-lysine by bacterial enzymes. V. Glutaric semialdehyde dehydrogenase by Ichihara A. (1961) -
Ichihara , A. , E. A. Ichihara , and M. Suda . 1960 . Metabolism of L-lysine by bacterial enzymes. IV. 5-Aminovaleric acid-glutamic acid transaminase . J. Biochem. 48 : 412 - 420 .
(
10.1093/oxfordjournals.jbchem.a127187
) / J. Biochem. / Metabolism of L-lysine by bacterial enzymes. IV. 5-Aminovaleric acid-glutamic acid transaminase by Ichihara A. (1960) - Koo , P. , Y. F. Chang , and E. Adams . 1970 . Isoenzymes of a-ketoglutaric semialdehyde dehydrogenase in Pseudomonas . Fed. Proc. 29 : 895 . / Fed. Proc. / Isoenzymes of a-ketoglutaric semialdehyde dehydrogenase in Pseudomonas by Koo P. (1970)
-
Lin , E. C. C. , S. A. Larner , and S. E. Jorgensen . 1962 . A method for isolating constitutive mutants for carbohydrate-catabolizing enzymes . Biochim. Biophys. Acta. 60 : 422 - 424 .
(
10.1016/0006-3002(62)90423-7
) / Biochim. Biophys. Acta. / A method for isolating constitutive mutants for carbohydrate-catabolizing enzymes by Lin E. C. C. (1962) -
Mandelstam , J. , and G. A. Jacoby . 1965 . Induction and multi-sensitive end-product repression in the enzymatic pathway degrading mandalate Pseudomonas fluorescens . Biochem. J. 94 : 569 - 577 .
(
10.1042/bj0940569
) / Biochem. J. / Induction and multi-sensitive end-product repression in the enzymatic pathway degrading mandalate Pseudomonas fluorescens by Mandelstam J. (1965) - in
-
Meister , A. , A. N. Radhakrishnan , and S. D. Buckley . 1957 . Enzymatic synthesis of L-pipecolic acid and L-proline . J. Biol. Chem. 299 : 789 - 800 .
(
10.1016/S0021-9258(19)63684-7
) / J. Biol. Chem. / Enzymatic synthesis of L-pipecolic acid and L-proline by Meister A. (1957) -
Miller , D. L. , and V. W. Rodwell . 1971 . Metabolism of basic amino acids in Pseudomonas putida. Properties of the inducible Iysine transport system . J. Biol. Chem. 246 : 1765 - 1771 .
(
10.1016/S0021-9258(18)62374-9
) / J. Biol. Chem. / Metabolism of basic amino acids in Pseudomonas putida. Properties of the inducible Iysine transport system by Miller D. L. (1971) -
Miller , D. L. , and V. W. Rodwell . 1971 . Metabolism of basic amino acids in Pseudomorns putida. Catabolism of Iysine by cyclic and acyclic intermediates . J. Biol. Chem. 246 : 2758 - 2764 .
(
10.1016/S0021-9258(18)62249-5
) / J. Biol. Chem. / Metabolism of basic amino acids in Pseudomorns putida. Catabolism of Iysine by cyclic and acyclic intermediates by Miller D. L. (1971) -
Petrakis , P. L. , and D. M. Greenberg . 1965 . Studies on L-proline: NAD(P)+ 2-oxidoreductase of hog kidney . Biochim. Biophys. Acta 99 : 78 - 95 .
(
10.1016/S0926-6593(65)80009-1
) / Biochim. Biophys. Acta / Studies on L-proline: NAD(P)+ 2-oxidoreductase of hog kidney by Petrakis P. L. (1965) -
Piez , K. A. , F. Irreverre , and H. L. Wolff . 1956 . The separation and determination of cyclic amino acids . J. Biol. Chem. 223 : 687 - 697 .
(
10.1016/S0021-9258(18)65068-9
) / J. Biol. Chem. / The separation and determination of cyclic amino acids by Piez K. A. (1956) -
Rao , D. R. , and V. W. Rodwell . 1962 . Metabolism of pipecolic acid in a Pseudomonas species. I. a-Aminoadipic and glutamic acids . J. Biol. Chem. 237 : 2232 - 2238 .
(
10.1016/S0021-9258(19)63424-1
) / J. Biol. Chem. / Metabolism of pipecolic acid in a Pseudomonas species. I. a-Aminoadipic and glutamic acids by Rao D. R. (1962) -
Reitz , M. S. , D. L. Miller , and V. W. Rodwell . 1969 . Synthesis of 5-aminovaleramide . Anal. Biochem. 28 : 269 - 272 .
(
10.1016/0003-2697(69)90178-X
) / Anal. Biochem. / Synthesis of 5-aminovaleramide by Reitz M. S. (1969) - Reitz , M. S. , and V. W. Rodwell . 1970 . 6-Aminovaleramidase of Pseudomonas putida . J. Biol. Chem. J. BACTERIOL. / J. Biol. Chem. J. BACTERIOL. / 6-Aminovaleramidase of Pseudomonas putida by Reitz M. S. (1970)
-
Soda , K. , H. Misono , and T. Yamamoto . 1968 . L-Lysinea-ketoglutarate aminotransferase. I. Identification of a product, Al-piperideine-6-carboxylic acid . Biochemistry 7 : 4102 - 4109 .
(
10.1021/bi00851a045
) / Biochemistry / L-Lysinea-ketoglutarate aminotransferase. I. Identification of a product, Al-piperideine-6-carboxylic acid by Soda K. (1968) -
Stadtman , E. R. , G. D. Novelli , and F. Lipmann . 1951 . Coenzyme A function in an acetyl transfer by the phosphotransacetylase system . J. Biol. Chem. 191 : 365 - 376 .
(
10.1016/S0021-9258(18)50986-8
) / J. Biol. Chem. / Coenzyme A function in an acetyl transfer by the phosphotransacetylase system by Stadtman E. R. (1951) -
Stanier , R. Y. , N. J. Palleroni , and M. Doudoroff . 1966 . The aerobic Pseudomonads: a taxonomic study . J. Gen. Microbiol. 43 : 159 - 271 .
(
10.1099/00221287-43-2-159
) / J. Gen. Microbiol. / The aerobic Pseudomonads: a taxonomic study by Stanier R. Y. (1966) - Suda , M. , T. Kamahara , and H. Hagihara . 1954 . Metabolism of L-lysine by bacterial enzymes . Med. J. Osaka Univ. 5 : 119 - 126 . / Med. J. Osaka Univ. / Metabolism of L-lysine by bacterial enzymes by Suda M. (1954)
-
Tabor C. W. and S. M. Rosenthal. 1963. Determination of spermine spermidine putrescine and related compounds p. 615-622. In S. P. Colowick and N. 0. Kaplan (ed.) Methods in enzymology vol. 6. Academic Press Inc. New York.
(
10.1016/0076-6879(63)06230-3
) -
Takeda , H. , and 0. Hayaishi . 1966 . Crystalline L-lysine oxygenase . J. Biol. Chem. 241 : 2733 - 2736 .
(
10.1016/S0021-9258(18)96601-9
) / J. Biol. Chem. / Crystalline L-lysine oxygenase by Takeda H. (1966) - Takeda , H. , S. Yamamoto , Y. Kojima , and 0. Hayaishi . 1969 . Studies on monooxygenases. I. General properties of crystalline L-lysine monooxygenase . J. Biol. Chem. 244 : 2935 - 2941 . / J. Biol. Chem. / Studies on monooxygenases. I. General properties of crystalline L-lysine monooxygenase by Takeda H. (1969)
-
Vandecasteele , J- P. , and M. Hermann . 1972 . Regulation of a catabolic pathway: Iysine degradation in Pseudomonas putida . Eur. J. Biochem. 31 : 80 - 85 .
(
10.1111/j.1432-1033.1972.tb02503.x
) / Eur. J. Biochem. / Regulation of a catabolic pathway: Iysine degradation in Pseudomonas putida by Vandecasteele P. (1972) - Yamamoto , S. , T. Nakazawa , and 0. Hayaishi . 1972 . Studies on monooxygenases. IV. Anaerobic formation of an a-keto acid by L-lysine monooxygenase . J. Biol. Chem. 247 : 3434 - 3444 . / J. Biol. Chem. / Studies on monooxygenases. IV. Anaerobic formation of an a-keto acid by L-lysine monooxygenase by Yamamoto S. (1972)
Dates
Type | When |
---|---|
Created | 5 years, 8 months ago (Jan. 3, 2020, 9:59 a.m.) |
Deposited | 4 years, 1 month ago (July 29, 2021, 1:12 p.m.) |
Indexed | 1 year, 5 months ago (March 18, 2024, 5:21 p.m.) |
Issued | 51 years, 7 months ago (Feb. 1, 1974) |
Published | 51 years, 7 months ago (Feb. 1, 1974) |
Published Print | 51 years, 7 months ago (Feb. 1, 1974) |
@article{Chang_1974, title={<scp>d</scp> -Lysine Catabolic Pathway in Pseudomonas putida: Interrelations with <scp>l</scp> -Lysine Catabolism}, volume={117}, ISSN={1098-5530}, url={http://dx.doi.org/10.1128/jb.117.2.753-764.1974}, DOI={10.1128/jb.117.2.753-764.1974}, number={2}, journal={Journal of Bacteriology}, publisher={American Society for Microbiology}, author={Chang, Yung-Feng and Adams, Elijah}, year={1974}, month=feb, pages={753–764} }