Abstract
cdc9, a temperature-sensitive mutant defective in polynucleotide deoxyribonucleic acid (DNA) ligase activity, accumulates low-molecular-weight DNA fragments (as measured by sedimentation of DNA in alkaline sucrose gradients) at the nonpermissive temperature after irradiation with ultraviolet light. This phenotype of cdc9 is a sensitive indicator of successful incision during excision repair of dimers. In strains containing excision-defective mutations in any of nine genes in combination with the cdc9 mutation, the absence of low-molecular-weight DNA at the nonpermissive temperature after ultraviolet treatment suggests that these mutants are incision defective, whereas the presence of low-molecular-weight DNA indicates that the mutants are defective in a step after incision. With rad1, rad2, rad3, rad4, and rad10 mutants, the molecular weight of the DNA remained unchanged after ultraviolet irradiation and incubation at the restrictive temperature, despite the presence of the cdc9 mutation; these mutants are therefore incision defective. Low-molecular-weight DNA was observed in rad14 cdc9 and rad16 cdc9 strains. With the rad16 strain, the accumulation of low-molecular-weight DNA correlated with the amount of excision taking place, whereas in the rad14 mutant strain, no evidence of dimer removal was obtained. Therefore, rad14 is likely to be defective in a step after incision.
References
27
Referenced
120
-
Clark , R. W. , G. H. Wever , and J. S. Wiberg . 1980 . High-molecular-weight DNA and the sedimentation coefficient: a new perspective based on DNA from T7 bacteriophage and two novel forms ofT4 bacteriophage . J. Virol. 33 : 438 - 448 .
(
10.1128/JVI.33.1.438-448.1980
) / J. Virol. / High-molecular-weight DNA and the sedimentation coefficient: a new perspective based on DNA from T7 bacteriophage and two novel forms ofT4 bacteriophage by Clark R. W. (1980) -
Cox , B. S. , and J. M. Parry . 1968 . The isolation, genetics and survival characteristics of ultraviolet-light sensitive mutants in yeast . Mutat. Res. 6 : 37 - 55 .
(
10.1016/0027-5107(68)90101-2
) / Mutat. Res. / The isolation, genetics and survival characteristics of ultraviolet-light sensitive mutants in yeast by Cox B. S. (1968) -
Doty , P. , B. McGill , and S. Rice . 1958 . The properties of sonic fragments of deoxyribose acid . Proc. Natl. Acad. Sci. U.S.A. 44 : 432 - 438 .
(
10.1073/pnas.44.5.432
) / Proc. Natl. Acad. Sci. U.S.A. / The properties of sonic fragments of deoxyribose acid by Doty P. (1958) -
Game , J. C. , and B. S. Cox . 1971 . Allelism tests of mutants affecting sensitivity to radiation in yeast and a proposed nomenclature . Mutat. Res. 12 : 328 - 331 .
(
10.1016/0027-5107(71)90021-2
) / Mutat. Res. / Allelism tests of mutants affecting sensitivity to radiation in yeast and a proposed nomenclature by Game J. C. (1971) - Goldring , E. S. , L. I. Grossman , D. Krupnick , D. R. Cryer , and J. Marmur . 1970 . The petite mutation in yeast. Loss of mitochondrial deoxyribonucleic acid during induction of petites with ethidium bromide . J. Mol. Biol. 52 : 323 - 335 . / J. Mol. Biol. / The petite mutation in yeast. Loss of mitochondrial deoxyribonucleic acid during induction of petites with ethidium bromide by Goldring E. S. (1970)
-
Haseltine , W. A. , L. K. Gordon , C. P. Lindan , R. IL Grafstrom , M. L. Shaper , and L. Grossman . 1980 . Cleavage of pyrimidine dimers in specific DNA sequences by a pyrimidine dimer DNA-glycosylase of M. luteus . Nature (London) 285 : 634 - 641 .
(
10.1038/285634a0
) / Nature (London) / Cleavage of pyrimidine dimers in specific DNA sequences by a pyrimidine dimer DNA-glycosylase of M. luteus by Haseltine W. A. (1980) -
Hill , W. E. , and W. L. Fangman . 1973 . Scission of Escherichia coli deoxyribonucleic acid in alkali . Biochemistry 12 : 1772 - 1774 .
(
10.1021/bi00733a017
) / Biochemistry / Scission of Escherichia coli deoxyribonucleic acid in alkali by Hill W. E. (1973) -
Johnston , L. H. , and K. A. Nasmyth . 1978 . Saccharomyces cerevisiae cell cycle mutant cdc 9 is defective in DNA ligase . Nature (London) 274 : 891 - 893 .
(
10.1038/274891a0
) / Nature (London) / Saccharomyces cerevisiae cell cycle mutant cdc 9 is defective in DNA ligase by Johnston L. H. (1978) -
Kutter , E. M. , and J. S. Wiberg . 1968 . Degradation of cytosine-containing bacterial and bacteriophage DNA after infection of Escherichia coli B with bacteriophage T4D wild-type and with mutants defective in genes 46, 47 and 56 . J. Mol. Biol. 38 : 395 - 411 .
(
10.1016/0022-2836(68)90394-X
) / J. Mol. Biol. / Degradation of cytosine-containing bacterial and bacteriophage DNA after infection of Escherichia coli B with bacteriophage T4D wild-type and with mutants defective in genes 46, 47 and 56 by Kutter E. M. (1968) -
Lauer , G. D. , T. M. Roberts , and L. C. Klotz . 1977 . Determination of the nuclear DNA content of Saccharomyces cerevisiae and implications for the organization of DNA in yeast chromosomes . J. Mol. Biol. 114 : 507 - 526 .
(
10.1016/0022-2836(77)90175-9
) / J. Mol. Biol. / Determination of the nuclear DNA content of Saccharomyces cerevisiae and implications for the organization of DNA in yeast chromosomes by Lauer G. D. (1977) -
Lawrence , C. W. , J. W. Stewart , F. Sherman , and R. Christensen . 1974 . Specificity and frequency of ultraviolet-induced reversion of an iso-1-cytochrome c ochre mutant in radiation-sensitive strains of yeast . J. Mol. Biol. 85 : 137 - 162 .
(
10.1016/0022-2836(74)90134-X
) / J. Mol. Biol. / Specificity and frequency of ultraviolet-induced reversion of an iso-1-cytochrome c ochre mutant in radiation-sensitive strains of yeast by Lawrence C. W. (1974) -
Mortelmans , K. , E. C. Friedberg , IL Slor , G. Thomas , and J. E. Cleaver . 1976 . Defective thymine dimer excision by cell-free extracts ofxeroderma pigmentosum cells . Proc. Natl. Acad. Sci. U.S.A. 73 : 2757 - 2761 .
(
10.1073/pnas.73.8.2757
) / Proc. Natl. Acad. Sci. U.S.A. / Defective thymine dimer excision by cell-free extracts ofxeroderma pigmentosum cells by Mortelmans K. (1976) -
Prakash , L. 1975 . Repair of pyrimidine dimers in nuclear and mitochondrial DNA of yeast irradiated with low doses of ultraviolet light . J. Mol. Biol. 98 : 781 - 795 .
(
10.1016/S0022-2836(75)80010-6
) / J. Mol. Biol. / Repair of pyrimidine dimers in nuclear and mitochondrial DNA of yeast irradiated with low doses of ultraviolet light by Prakash L. (1975) -
Prakash , L. 1977 . Repair of pyrimidine dimers in radiation-sensitive mutants rad 3, rad 4, rad 6 and rad 9 of Saccharomyces cerevisiae . Mutat. Res. 45 : 13 - 20 .
(
10.1016/0027-5107(77)90038-0
) / Mutat. Res. / Repair of pyrimidine dimers in radiation-sensitive mutants rad 3, rad 4, rad 6 and rad 9 of Saccharomyces cerevisiae by Prakash L. (1977) -
Prakash , L. 1977 . Defective thymine dimer excision in radiation-sensitive mutants radlO and rad16 ofSaccharomyces cerevisiae . Mol. Gen. Genet. 152 : 125 - 128 .
(
10.1007/BF00268808
) / Mol. Gen. Genet. / Defective thymine dimer excision in radiation-sensitive mutants radlO and rad16 ofSaccharomyces cerevisiae by Prakash L. (1977) -
Prakash , L , and S. Prakash . 1979 . Three additional genes involved in pyrimidine dimer removal in Saccharomyces cerevisiae: RAD7, RAD14 and MMS19 . Mol. Gen. Genet. 176 : 351 - 359 .
(
10.1007/BF00333097
) / Mol. Gen. Genet. / Three additional genes involved in pyrimidine dimer removal in Saccharomyces cerevisiae: RAD7, RAD14 and MMS19 by Prakash L (1979) -
Prakash , S. , L Prakash , W. Burke , and B. A. Montelone . 1980 . Effects of the RAD52 gene on recombination in Saccharomyces cerevisiae . Genetics 94 : 31 - 50 .
(
10.1093/genetics/94.1.31
) / Genetics / Effects of the RAD52 gene on recombination in Saccharomyces cerevisiae by Prakash S. (1980) -
Radany , E. H. , and E. C. Friedberg . 1980 . A pyrimidine dimer-DNA glycosylase activity associated with the v gene product of bacteriophage T4 . Nature (London) 286 : 182 - 185 .
(
10.1038/286182a0
) / Nature (London) / A pyrimidine dimer-DNA glycosylase activity associated with the v gene product of bacteriophage T4 by Radany E. H. (1980) -
Resnick , M. A. , and J. K. Setlow . 1972 . Repair of pyrimidine dimer damage induced in yeast by ultraviolet light . J. Bacteriol. 109 : 979 - 986 .
(
10.1128/JB.109.3.979-986.1972
) / J. Bacteriol. / Repair of pyrimidine dimer damage induced in yeast by ultraviolet light by Resnick M. A. (1972) -
Reynolds , R. J. 1978 . Removal of pyrimidine dimers from Saccharomyces cerevisiae nuclear DNA under nongrowth conditions as detected by a sensitive enzymatic assay . Mutat. Res. 50 : 43 - 56 .
(
10.1016/0027-5107(78)90059-3
) / Mutat. Res. / Removal of pyrimidine dimers from Saccharomyces cerevisiae nuclear DNA under nongrowth conditions as detected by a sensitive enzymatic assay by Reynolds R. J. (1978) -
Seeberg , E. 1978 . Reconstitution of an Escherichia coli repair endonuclease activity from the separated uvrA + and uvrB+/uvrC' gene products . Proc. Natl. Acad. Sci. U.S.A. 75 : 2569 - 2573 .
(
10.1073/pnas.75.6.2569
) / Proc. Natl. Acad. Sci. U.S.A. / Reconstitution of an Escherichia coli repair endonuclease activity from the separated uvrA + and uvrB+/uvrC' gene products by Seeberg E. (1978) -
Snow , R. 1967 . Mutants of yeast sensitive to ultraviolet light . J. Bacteriol. 94 : 571 - 575 .
(
10.1128/JB.94.3.571-575.1967
) / J. Bacteriol. / Mutants of yeast sensitive to ultraviolet light by Snow R. (1967) -
Unrau , P. , R. Wheatcroft , and B. S. Cox . 1971 . The excision of pyrimidine dixners from DNA of ultraviolet irradiated yeast . Mol. Gen. Genet. 113 : 359 - 362 .
(
10.1007/BF00272336
) / Mol. Gen. Genet. / The excision of pyrimidine dixners from DNA of ultraviolet irradiated yeast by Unrau P. (1971) -
Unrau , P. , R. Wheatcroft , B. Cox ., and T. Olive . 1973 . The formation of pyrimidine dimers in the DNA of fungi and bacteria . Biochim. Biophys Acta 312 : 626 - 632 .
(
10.1016/0005-2787(73)90065-8
) / Biochim. Biophys Acta / The formation of pyrimidine dimers in the DNA of fungi and bacteria by Unrau P. (1973) -
Waters , R. , and E. Moustacchi . 1974 . The disappearance of ultraviolet-induced pyrimidine dimers from the nuclear DNA of exponential and stationary phase cells of Saccharomyces cerevisiae following various post-irradiation treatments . Biochim. Biophys. Acta 353 : 407 - 419 .
(
10.1016/0005-2787(74)90048-3
) / Biochim. Biophys. Acta / The disappearance of ultraviolet-induced pyrimidine dimers from the nuclear DNA of exponential and stationary phase cells of Saccharomyces cerevisiae following various post-irradiation treatments by Waters R. (1974) -
Youngs , D. A. , and K. Smith . 1977 . The involvement of polynucleotide ligase in the repair of UV-induced DNA damage in Escherichia coli K-12 cells . Mol. Gen. Genet. 152 : 3741 .
(
10.1007/BF00264937
) / Mol. Gen. Genet. / The involvement of polynucleotide ligase in the repair of UV-induced DNA damage in Escherichia coli K-12 cells by Youngs D. A. (1977) -
Youngs , D. A. , E. van der Schueren , and K. C. Smith . 1974 . Separate branches of the uvr gene-dependent excision repair process in ultraviolet-irradiated Escherichia coli K-12 cells; their dependence upon growthmedium and the poUA, recA, recB, and exrA genes . J. Bacteriol. 117 : 717 - 725 .
(
10.1128/JB.117.2.717-725.1974
) / J. Bacteriol. / Separate branches of the uvr gene-dependent excision repair process in ultraviolet-irradiated Escherichia coli K-12 cells; their dependence upon growthmedium and the poUA, recA, recB, and exrA genes by Youngs D. A. (1974)
Dates
Type | When |
---|---|
Created | 5 years, 7 months ago (Jan. 3, 2020, 11:41 a.m.) |
Deposited | 4 years, 2 months ago (May 27, 2021, 8:35 a.m.) |
Indexed | 1 year, 1 month ago (July 10, 2024, 4:32 p.m.) |
Issued | 43 years, 9 months ago (Nov. 1, 1981) |
Published | 43 years, 9 months ago (Nov. 1, 1981) |
Published Print | 43 years, 9 months ago (Nov. 1, 1981) |
@article{Wilcox_1981, title={Incision and postincision steps of pyrimidine dimer removal in excision-defective mutants of Saccharomyces cerevisiae}, volume={148}, ISSN={1098-5530}, url={http://dx.doi.org/10.1128/jb.148.2.618-623.1981}, DOI={10.1128/jb.148.2.618-623.1981}, number={2}, journal={Journal of Bacteriology}, publisher={American Society for Microbiology}, author={Wilcox, D R and Prakash, L}, year={1981}, month=nov, pages={618–623} }