DOI: 10.1128/9781555818142.ch5. Cryo-Electron Microscopy of the Translational Apparatus: Experimental Evidence for the Paths of mRNA, tRNA, and the Polypeptide Chain

Cryo-Electron Microscopy of the Translational Apparatus: Experimental Evidence for the Paths of mRNA, tRNA, and the Polypeptide Chain

10.1128/9781555818142.ch5

Crossref book-chapter

ASM Press

The Ribosome (235)

Bibliography

Frank, J., Penczek, P., Grassucci, R. A., Heagle, A., Spahn, C. M. T., & Agrawal, R. K. (2014). Cryo-Electron Microscopy of the Translational Apparatus: Experimental Evidence for the Paths of mRNA, tRNA, and the Polypeptide Chain. The Ribosome, 45â51.

Authors 6

Joachim Frank (first)
Pawel Penczek (additional)
Robert A. Grassucci (additional)
Amy Heagle (additional)
Christian M. T. Spahn (additional)
Rajendra K. Agrawal (additional)

References 37 Referenced 2

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10.1073/pnas.95.11.6134 / Proc. Natl. Acad. Sci. USA / Visualization of elongation factor G on the Escherichia coli 70S ribosome: the mechanism of translocation by Agrawal (1998a)
{'key': '10.1128/9781555818142.ch5-BIB0003|c5-cit-0003', 'first-page': '717', 'volume-title': 'Proceedings of the 14th International Congress on Electron Microscopy', 'author': 'Agrawal', 'year': '1998b'} / Proceedings of the 14th International Congress on Electron Microscopy by Agrawal (1998b)
10.1074/jbc.274.13.8723 / J. Biol. Chem. / Effect of buffer conditions on the position of tRNAs on the 70S ribosome as visualized by cryoelectron microscopy by Agrawal (1999a)
10.1038/10695 / Nat. Struct. Biol. / EF-G-dependent GTP hydrolysis induces translocation accompanied by large conformational changes in the 70S ribosome by Agrawal (1999b)
{'key': '10.1128/9781555818142.ch5-BIB0006|c5-cit-0006', 'author': 'Agrawal', 'journal-title': 'Unpublished data'} / Unpublished data by Agrawal
{'key': '10.1128/9781555818142.ch5-BIB0007|c5-cit-0007', 'author': 'Agrawal', 'journal-title': 'Unpublished data'} / Unpublished data by Agrawal
10.1016/S0092-8674(00)81455-5 / Cell / A 9 Å resolution X-ray crystallographic map of the large ribosomal subunit by Ban (1998)
10.1126/science.278.5346.2123 / Science / Alignment of conduits for the nascent polypeptide chain in the ribosome-Sec61 complex by Beckmann (1997)
10.1073/pnas.79.10.3111 / Proc. Natl. Acad. Sci. USA / Nascent polypeptide chains emerge from the exit domain of the large ribosomal subunit: immune mapping of the nascent chain by Bernabeu (1982)
10.1016/S0091-679X(08)60935-8 / Methods Cell Biol. / EM methods for visualization of genetic activity from disrupted nuclei by Beyer (1994)
10.1038/2201088a0 / Nature / Direct translation of a circular messenger DNA by Bretscher (1968)
10.1016/S0969-2126(98)00040-9 / Structure / The 80S rat liver ribosome at 25 A resolution by electron cryomicroscopy and angular reconstitution by Dube (1998)
{'key': '10.1128/9781555818142.ch5-BIB0014|c5-cit-0014', 'first-page': '213', 'volume-title': 'Biophysical Methods in Molecular Biology', 'author': 'Eisenstein', 'year': '1994'} / Biophysical Methods in Molecular Biology by Eisenstein (1994)
10.1038/376441a0 / Nature / A model of protein synthesis based on cryo-electron microscopy of the E. coli ribosome by Frank (1995a)
10.1139/o95-084 / Biochem. Cell Biol. / A model of the translational apparatus based on a three-dimensional reconstruction of the Escherichia coli ribosome by Frank (1995b)
{'key': '10.1128/9781555818142.ch5-BIB0017|c5-cit-0017', 'article-title': 'Animation of the dynamic events of the elongation cycle based on cryoelectron microscopy of functional complexes of the ribosome', 'author': 'Frank', 'journal-title': 'J. Struct. Biol.'} / J. Struct. Biol. / Animation of the dynamic events of the elongation cycle based on cryoelectron microscopy of functional complexes of the ribosome by Frank
{'key': '10.1128/9781555818142.ch5-BIB0018|c5-cit-0018', 'article-title': 'Three-dimensional cryo-electron microscopy of ribosomes', 'author': 'Frank', 'journal-title': 'Methods. Enzymol.'} / Methods. Enzymol. / Three-dimensional cryo-electron microscopy of ribosomes by Frank
{'key': '10.1128/9781555818142.ch5-BIB0019|c5-cit-0019', 'author': 'Gabashvili', 'journal-title': 'Unpublished data'} / Unpublished data by Gabashvili
10.1093/emboj/18.22.6501 / EMBO J. / Major rearrangements in the 70S ribosomal 3D structure caused by a conformational switch in 16S ribosomal RNA by Gabashvili (1999)
Hardesty , B. O. Odom W. Kudlicki G. Kramer 1993 Extension and folding of nascent peptides on ribosomes 347 358 In K. H. Nierhaus F. Franceschi A. R. Subramanian V. A. Erdmann B. Wittmann-Lieboldt The Translational Apparatus Plenum Press New York, N.Y (10.1007/978-1-4615-2407-6_33)
10.1016/S0959-440X(99)80014-1 / Curr. Opin. Struct. Biol. / Co-translational folding by Hardesty (1999)
10.1006/jmbi.1996.0497 / J. Mol. Biol. / Three-dimensional reconstruction of the Escherichia coli 30 S ribosomal subunit in ice by Lata (1996)
10.1016/S0022-2836(86)80006-7 / J. Mol. Biol. / Stereochemical analysis of ribosomal transpeptidation. Conformation of nascent peptide by Lim (1986)
10.1126/science.277.5330.1262 / Science / A conformational switch in Escherichia coli 16S ribosomal RNA during decoding of messenger RNA by Lodmell (1997)
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10.1006/jmbi.1997.1212 / J. Mol. Biol. / A new model for the three-dimensional folding of Escherichia coli 16 S ribosomal RNA. III. The topography of the functional centre by Müller (1997)
10.1016/0022-2836(90)90083-X / J. Mol. Biol. / DNA-hybridization electron microscopy tertiary structure of 16 S rRNA by Oakes (1990)
10.1016/0014-5793(88)81434-0 / FEBS Lett. / Does the channel for nascent peptide exist inside the ribosome? by Ryabova (1988)
{'key': '10.1128/9781555818142.ch5-BIB0030|c5-cit-0030', 'article-title': 'Direct three-dimensional localization and positive identification of RNA helices within the ribosome by means of genetic tagging and cryo-electron microscopy', 'author': 'Spahn', 'journal-title': 'Structure'} / Structure / Direct three-dimensional localization and positive identification of RNA helices within the ribosome by means of genetic tagging and cryo-electron microscopy by Spahn
10.1093/nar/23.13.2371 / Nucleic Acids Res. / Mapping the path of the nascent peptide chain through the 23S RNA in the 50S ribosomal subunit by Stade (1995)
10.1016/S0969-2126(01)00216-7 / Structure / The 70S Escherichia coli ribosome at 23 Å resolution: fitting the ribosomal RNA by Stark (1995)
10.1016/S0092-8674(00)81854-1 / Cell / Arrangement of tRNAs in pre- and posttranslocational ribosomes revealed by electron cryomicroscopy by Stark (1997a)
10.1038/38770 / Nature / Visualization of elongation factor Tu on the Escherichia coli ribosome by Stark (1997b)
10.1083/jcb.130.3.519 / J. Cell Biol. / NAC covers ribosome-associated nascent chains thereby forming a protective environment for regions of nascent chains just emerging from the peptidyl transferase center by Wang (1995)
10.1016/S0969-2126(98)00069-0 / Structure / Functional universality and evolutionary diversity: insights from the structure of the ribosome by Yonath (1998)
10.1126/science.3576200 / Science / A tunnel in the large ribosomal subunit revealed by three-dimensional image reconstruction by Yonath (1987)

Dates

Type	When
Created	11 years, 4 months ago (April 8, 2014, 4:15 p.m.)
Deposited	5 years ago (Aug. 20, 2020, 2:56 p.m.)
Indexed	1 year, 3 months ago (May 11, 2024, 6:45 p.m.)
Issued	11 years, 4 months ago (April 8, 2014)
Published	11 years, 4 months ago (April 8, 2014)
Published Online	11 years, 4 months ago (April 8, 2014)

Funders 0

None

BibTeX

@inbook{Frank_2014, title={Cryo-Electron Microscopy of the Translational Apparatus: Experimental Evidence for the Paths of mRNA, tRNA, and the Polypeptide Chain}, ISBN={9781555811846}, url={http://dx.doi.org/10.1128/9781555818142.ch5}, DOI={10.1128/9781555818142.ch5}, booktitle={The Ribosome}, publisher={ASM Press}, author={Frank, Joachim and Penczek, Pawel and Grassucci, Robert A. and Heagle, Amy and Spahn, Christian M. T. and Agrawal, Rajendra K.}, year={2014}, month=apr, pages={45–51} }

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