Crossref journal-article
American Association for the Advancement of Science (AAAS)
Science (221)
Abstract

Recent theoretical developments permit the prediction of 1 H, 13 C, 15 N, and 19 F nuclear magnetic resonance chemical shifts in proteins and offer new ways of analyzing secondary and tertiary structure as well as for probing protein electrostatics. For 13 C, φ, ψ torsion angles dominate shielding for Cα and Cβ, but the addition of hydrogen bonding and electrostatics gives even better accord with experiment. For 15 N H , side chain (χ 1 ) torsion angles are also important, as are nearest neighbor sequence effects, whereas for 1 H N , hydrogen bonding is particularly significant. For 19 F, weak or long-range electrostatic fields dominate 19 F shielding nonequivalencies. The ability to predict chemical shifts in proteins from known or test structures opens new avenues to structure refinement or determination, especially for condensed systems.

Bibliography

de Dios, A. C., Pearson, J. G., & Oldfield, E. (1993). Secondary and Tertiary Structural Effects on Protein NMR Chemical Shifts: an ab Initio Approach. Science, 260(5113), 1491–1496.

Authors 3
  1. Angel C. de Dios (first)
  2. John G. Pearson (additional)
  3. Eric Oldfield (additional)
References 45 Referenced 405
  1. ALLERHAND, A, NATURAL-ABUNDANCE C-13 NUCLEAR MAGNETIC-RESONANCE STUDIES IN 20-MM SAMPLE TUBES - OBSERVATION OF NUMEROUS SINGLE-CARBON RESONANCES OF HEN EGG-WHITE LYSOZYME, BIOCHEMISTRY 12: 1335 (1973). (10.1021/bi00731a013) / BIOCHEMISTRY (1973)
  2. ANDO, I, CONFORMATION-DEPENDENT C-13 NMR CHEMICAL-SHIFTS OF POLY(L-ALANINE) IN THE SOLID-STATE - FPT INDO CALCULATION OF N-ACETYL-N'-METHYL-L-ALANINE AMIDE AS A MODEL-COMPOUND OF POLY(L-ALANINE), MACROMOLECULES 17: 457 (1984). (10.1021/ma00133a036) / MACROMOLECULES (1984)
  3. AUGSPURGER, J, CHEMICAL-SHIFT RANGES IN PROTEINS, JOURNAL OF MAGNETIC RESONANCE 100: 342 (1992). / JOURNAL OF MAGNETIC RESONANCE (1992)
  4. AUGSPURGER, J.D., CORRELATION OF C-13 AND O-17 CHEMICAL-SHIFTS AND THE VIBRATIONAL FREQUENCY OF ELECTRICALLY PERTURBED CARBON-MONOXIDE - A POSSIBLE MODEL FOR DISTAL LIGAND EFFECTS IN CARBONMONOXYHEME PROTEINS, JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 113: 2447 (1991). (10.1021/ja00007a015) / JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (1991)
  5. AUGSPURGER, J.D., ELECTROMAGNETIC PROPERTIES OF MOLECULES FROM A UNIFORM PROCEDURE FOR DIFFERENTIATION OF MOLECULAR WAVE-FUNCTIONS TO HIGH-ORDER, JOURNAL OF PHYSICAL CHEMISTRY 95: 9230 (1991). (10.1021/j100176a037) / JOURNAL OF PHYSICAL CHEMISTRY (1991)
  6. BATCHELOR, J.G., THEORY OF LINEAR ELECTRIC-FIELD SHIFTS IN C-13 NUCLEAR MAGNETIC-RESONANCE, JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 97: 3410 (1975). (10.1021/ja00845a022) / JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (1975)
  7. BAX, A, TWO-DIMENSIONAL NMR AND PROTEIN-STRUCTURE, ANNUAL REVIEW OF BIOCHEMISTRY 58: 223 (1989). (10.1146/annurev.bi.58.070189.001255) / ANNUAL REVIEW OF BIOCHEMISTRY (1989)
  8. BROOKS, B. R., JOURNAL OF COMPUTATIONAL CHEMISTRY 4: 187 (1983). (10.1002/jcc.540040211) / JOURNAL OF COMPUTATIONAL CHEMISTRY (1983)
  9. BUCKINGHAM, A. D., CANADIAN JOURNAL OF CHEMISTRY-REVUE CANADIENNE DE CHIMIE 38: 300 (1960). (10.1139/v60-040) / CANADIAN JOURNAL OF CHEMISTRY-REVUE CANADIENNE DE CHIMIE (1960)
  10. BUCKINGHAM, A.D., NUCLEAR MAGNETIC SHIELDING OF A HYDROGEN ATOM IN (1) AN ELECTRIC FIELD-GRADIENT AND (2) A CAGE, MOLECULAR PHYSICS 3: 219 (1960). (10.1080/00268976000100261) / MOLECULAR PHYSICS (1960)
  11. CHESNUT, D.B., LOCALLY DENSE BASIS-SETS FOR CHEMICAL-SHIFT CALCULATIONS, JOURNAL OF COMPUTATIONAL CHEMISTRY 10: 648 (1989). (10.1002/jcc.540100507) / JOURNAL OF COMPUTATIONAL CHEMISTRY (1989)
  12. 10.1126/science.2047852
  13. CUMMINS, P.L., THE EFFECTS OF INTERMOLECULAR INTERACTIONS ON THE ELECTRIC-FIELD GRADIENTS IN ICE AND LIQUID WATER - THE ROLE OF ELECTROSTATICS, MOLECULAR PHYSICS 61: 795 (1987). (10.1080/00268978700101481) / MOLECULAR PHYSICS (1987)
  14. DEDIOS, A.C., METHODS FOR COMPUTING NUCLEAR-MAGNETIC-RESONANCE CHEMICAL SHIELDING IN LARGE SYSTEMS - MULTIPLE CLUSTER AND CHARGE FIELD APPROACHES, CHEMICAL PHYSICS LETTERS 205: 108 (1993). (10.1016/0009-2614(93)85175-N) / CHEMICAL PHYSICS LETTERS (1993)
  15. DEDIOS A.C. unpublished data.
  16. DITCHFIELD, R, MOLECULAR-ORBITAL THEORY OF MAGNETIC SHIELDING AND MAGNETIC SUSCEPTIBILITY, JOURNAL OF CHEMICAL PHYSICS 56: 5688 (1972). (10.1063/1.1677088) / JOURNAL OF CHEMICAL PHYSICS (1972)
  17. Dykstra C. E. Calculation of NMR Shielding Constants and Their Use in the Determination of the Geometric and Electronic Structures of Molecules and Solids (1993).
  18. GLUSHKA, J, N-15 CHEMICAL-SHIFTS OF BACKBONE AMIDES IN BOVINE PANCREATIC TRYPSIN-INHIBITOR AND APAMIN, JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 111: 7716 (1989). (10.1021/ja00202a009) / JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (1989)
  19. GOLDSTEIN, R.A., PROTEIN TERTIARY STRUCTURE RECOGNITION USING OPTIMIZED HAMILTONIANS WITH LOCAL INTERACTIONS, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 89: 9029 (1992). / PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (1992)
  20. HANSEN, A.E., LOCALIZED ORBITAL LOCAL ORIGIN METHOD FOR CALCULATION AND ANALYSIS OF NMR SHIELDINGS - APPLICATIONS TO C-13 SHIELDING TENSORS, JOURNAL OF CHEMICAL PHYSICS 82: 5035 (1985). (10.1063/1.448625) / JOURNAL OF CHEMICAL PHYSICS (1985)
  21. JAMAN, A.I., ROTATIONAL SPECTRUM AND STRUCTURE OF THE LINEAR HCN-HCCH DIMER, CHEMICAL PHYSICS 154: 281 (1991). (10.1016/0301-0104(91)80078-V) / CHEMICAL PHYSICS (1991)
  22. LE C unpublished data.
  23. LEE, F.S., A LOCAL REACTION FIELD METHOD FOR FAST EVALUATION OF LONG-RANGE ELECTROSTATIC INTERACTIONS IN MOLECULAR SIMULATIONS, JOURNAL OF CHEMICAL PHYSICS 97: 3100 (1992). (10.1063/1.462997) / JOURNAL OF CHEMICAL PHYSICS (1992)
  24. LOLL, P. J., PROTEINS-STRUCTURE FUNCTION AND GENETICS 5: 183 (1989). (10.1002/prot.340050302) / PROTEINS-STRUCTURE FUNCTION AND GENETICS (1989)
  25. LONDON, F, The quantic theory of inter-atomic currents in aromatic combinations., JOURNAL DE PHYSIQUE ET LE RADIUM 8: 397 (1937). (10.1051/jphysrad:01937008010039700) / JOURNAL DE PHYSIQUE ET LE RADIUM (1937)
  26. LUCK, L.A., F-19 NMR-STUDIES OF THE D-GALACTOSE CHEMOSENSORY RECEPTOR .1. SUGAR BINDING YIELDS A GLOBAL STRUCTURAL-CHANGE, BIOCHEMISTRY 30: 4248 (1991). (10.1021/bi00231a021) / BIOCHEMISTRY (1991)
  27. MCDONALD, C.C., MANIFESTATIONS OF TERTIARY STRUCTURES OF PROTEINS IN HIGH-FREQUENCY NUCLEAR MAGNETIC RESONANCE, JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 89: 6332 (1967). (10.1021/ja01000a061) / JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (1967)
  28. MOWBRAY, S.L., RECEPTOR 1: 41 (1990). / RECEPTOR (1990)
  29. NICHOLSON, L.K., DYNAMICS OF METHYL-GROUPS IN PROTEINS AS STUDIED BY PROTON-DETECTED C-13 NMR-SPECTROSCOPY - APPLICATION TO THE LEUCINE RESIDUES OF STAPHYLOCOCCAL NUCLEASE, BIOCHEMISTRY 31: 5253 (1992). (10.1021/bi00138a003) / BIOCHEMISTRY (1992)
  30. Oldfield E. unpublished results.
  31. OSAPAY, K, A NEW ANALYSIS OF PROTON CHEMICAL-SHIFTS IN PROTEINS, JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 113: 9436 (1991). (10.1021/ja00025a002) / JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (1991)
  32. PARK, K.D., DISTAL AND PROXIMAL LIGAND INTERACTIONS IN HEME-PROTEINS - CORRELATIONS BETWEEN C-O AND FE-C VIBRATIONAL FREQUENCIES, O-17 AND C-13 NUCLEAR-MAGNETIC-RESONANCE CHEMICAL-SHIFTS, AND O-17 NUCLEAR-QUADRUPOLE COUPLING-CONSTANTS IN (CO)-O-17-LABELED AND (CO)-C-13-LABELED SPECIES, BIOCHEMISTRY 30: 2333 (1991). (10.1021/bi00223a007) / BIOCHEMISTRY (1991)
  33. Pearson, J. G., Journal of the American Chemical Society 115: 6851 (1993). (10.1021/ja00068a049) / Journal of the American Chemical Society (1993)
  34. Salem, L., Molecular Orbital Theory of Conjugated Systems: CH4 (1966). / Molecular Orbital Theory of Conjugated Systems (1966)
  35. SCHINDLER, M, THEORY OF MAGNETIC-SUSCEPTIBILITIES AND NMR CHEMICAL-SHIFTS IN TERMS OF LOCALIZED QUANTITIES .3. APPLICATION TO HYDROCARBONS AND OTHER ORGANIC-MOLECULES, JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 105: 1360 (1983). (10.1021/ja00343a049) / JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (1983)
  36. SPERA, S, EMPIRICAL CORRELATION BETWEEN PROTEIN BACKBONE CONFORMATION AND C-ALPHA AND C-BETA C-13 NUCLEAR-MAGNETIC-RESONANCE CHEMICAL-SHIFTS, JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 113: 5490 (1991). (10.1021/ja00014a071) / JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (1991)
  37. TORCHIA, D.A., STAPHYLOCOCCAL NUCLEASE - SEQUENTIAL ASSIGNMENTS AND SOLUTION STRUCTURE, BIOCHEMISTRY 28: 5509 (1989). (10.1021/bi00439a028) / BIOCHEMISTRY (1989)
  38. TOSSELL, J.A., ABINITIO CALCULATION OF TI NMR SHIELDINGS FOR TITANIUM-OXIDES AND HALIDES, JOURNAL OF MAGNETIC RESONANCE 94: 301 (1991). / JOURNAL OF MAGNETIC RESONANCE (1991)
  39. 10.1126/science.3057628
  40. WANG, J.F., SOLUTION STUDIES OF STAPHYLOCOCCAL NUCLEASE H124L .2. H-1, C-13, AND N-15 CHEMICAL-SHIFT ASSIGNMENTS FOR THE UNLIGATED ENZYME AND ANALYSIS OF CHEMICAL-SHIFT CHANGES THAT ACCOMPANY FORMATION OF THE NUCLEASE THYMIDINE 3',5'-BISPHOSPHATE CALCIUM TERNARY COMPLEX, BIOCHEMISTRY 31: 921 (1992). (10.1021/bi00118a039) / BIOCHEMISTRY (1992)
  41. WEINER, P.K., AMBER - ASSISTED MODEL-BUILDING WITH ENERGY REFINEMENT - A GENERAL PROGRAM FOR MODELING MOLECULES AND THEIR INTERACTIONS, JOURNAL OF COMPUTATIONAL CHEMISTRY 2: 287 (1981). (10.1002/jcc.540020311) / JOURNAL OF COMPUTATIONAL CHEMISTRY (1981)
  42. WILLIAMSON, M.P., A METHOD FOR THE CALCULATION OF PROTEIN ALPHA-CH CHEMICAL-SHIFTS, JOURNAL OF BIOMOLECULAR NMR 2: 83 (1992). (10.1007/BF02192802) / JOURNAL OF BIOMOLECULAR NMR (1992)
  43. WISHART, D.S., THE CHEMICAL-SHIFT INDEX - A FAST AND SIMPLE METHOD FOR THE ASSIGNMENT OF PROTEIN SECONDARY STRUCTURE THROUGH NMR-SPECTROSCOPY, BIOCHEMISTRY 31: 1647 (1992). (10.1021/bi00121a010) / BIOCHEMISTRY (1992)
  44. WISHART, D.S., RELATIONSHIP BETWEEN NUCLEAR-MAGNETIC-RESONANCE CHEMICAL-SHIFT AND PROTEIN SECONDARY STRUCTURE, JOURNAL OF MOLECULAR BIOLOGY 222: 311 (1991). (10.1016/0022-2836(91)90214-Q) / JOURNAL OF MOLECULAR BIOLOGY (1991)
  45. WOLINSKI, K, EFFICIENT IMPLEMENTATION OF THE GAUGE-INDEPENDENT ATOMIC ORBITAL METHOD FOR NMR CHEMICAL-SHIFT CALCULATIONS, JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 112: 8251 (1990). (10.1021/ja00179a005) / JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (1990)
Dates
Type When
Created 18 years, 10 months ago (Oct. 5, 2006, 7:05 p.m.)
Deposited 1 year, 7 months ago (Jan. 15, 2024, 6:24 a.m.)
Indexed 2 weeks, 6 days ago (Aug. 5, 2025, 8:21 a.m.)
Issued 32 years, 2 months ago (June 4, 1993)
Published 32 years, 2 months ago (June 4, 1993)
Published Print 32 years, 2 months ago (June 4, 1993)
Funders 0

None

@article{de_Dios_1993, title={Secondary and Tertiary Structural Effects on Protein NMR Chemical Shifts: an ab Initio Approach}, volume={260}, ISSN={1095-9203}, url={http://dx.doi.org/10.1126/science.8502992}, DOI={10.1126/science.8502992}, number={5113}, journal={Science}, publisher={American Association for the Advancement of Science (AAAS)}, author={de Dios, Angel C. and Pearson, John G. and Oldfield, Eric}, year={1993}, month=jun, pages={1491–1496} }