Abstract
Coiled-coil sequences in proteins consist of heptad repeats containing two characteristic hydrophobic positions. The role of these buried hydrophobic residues in determining the structures of coiled coils was investigated by studying mutants of the GCN4 leucine zipper. When sets of buried residues were altered, two-, three-, and four-helix structures were formed. The x-ray crystal structure of the tetramer revealed a parallel, four-stranded coiled coil. In the tetramer conformation, the local packing geometry of the two hydrophobic positions in the heptad repeat is reversed relative to that in the dimer. These studies demonstrate that conserved, buried residues in the GCN4 leucine zipper direct dimer formation. In contrast to proposals that the pattern of hydrophobic and polar amino acids in a protein sequence is sufficient to determine three-dimensional structure, the shapes of buried side chains in coiled coils are essential determinants of the global fold.
References
58
Referenced
1,304
-
ATKINS, EDT, A 4-STRAND COILED-COIL MODEL FOR SOME INSECT FIBROUS PROTEINS, JOURNAL OF MOLECULAR BIOLOGY 24: 139 (1967).
(
10.1016/0022-2836(67)90099-X
) / JOURNAL OF MOLECULAR BIOLOGY (1967) -
BANNER, D.W., STRUCTURE OF THE CO1E1 ROP PROTEIN AT 1.7 A RESOLUTION, JOURNAL OF MOLECULAR BIOLOGY 196: 657 (1987).
(
10.1016/0022-2836(87)90039-8
) / JOURNAL OF MOLECULAR BIOLOGY (1987) 10.1126/science.1853201
-
BROOKS, B.R., CHARMM - A PROGRAM FOR MACROMOLECULAR ENERGY, MINIMIZATION, AND DYNAMICS CALCULATIONS, JOURNAL OF COMPUTATIONAL CHEMISTRY 4: 187 (1983).
(
10.1002/jcc.540040211
) / JOURNAL OF COMPUTATIONAL CHEMISTRY (1983) 10.1126/science.235.4787.458
- Cantor, C. R., Biophysical Chemistry 3: 1132 (1980). / Biophysical Chemistry (1980)
- CARR M.C. unpublished data.
- CHAN, H.S., ORIGINS OF STRUCTURE IN GLOBULAR-PROTEINS, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 87: 6388 (1990). / PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (1990)
-
CHOTHIA, C, NATURE OF ACCESSIBLE AND BURIED SURFACES IN PROTEINS, JOURNAL OF MOLECULAR BIOLOGY 105: 1 (1976).
(
10.1016/0022-2836(76)90191-1
) / JOURNAL OF MOLECULAR BIOLOGY (1976) 10.1002/prot.340070102
10.1016/0141-8130(90)90023-4
10.1016/0141-8130(91)90004-E
- Creighton T. E. Proteins (1993).
-
CRICK, F. H. C., ACTA CRYSTALLOGRAPHICA 6: 685 (1953).
(
10.1107/S0365110X53001952
) / ACTA CRYSTALLOGRAPHICA (1953) 10.1107/S0365110X53001964
-
DAOPIN, S, STRUCTURAL AND THERMODYNAMIC CONSEQUENCES OF BURYING A CHARGED RESIDUE WITHIN THE HYDROPHOBIC CORE OF T4 LYSOZYME, BIOCHEMISTRY 30: 11521 (1991).
(
10.1021/bi00113a006
) / BIOCHEMISTRY (1991) -
DEGRADO, W.F., CONFORMATIONALLY CONSTRAINED ALPHA-HELICAL PEPTIDE MODELS FOR PROTEIN ION CHANNELS, BIOPOLYMERS 29: 205 (1990).
(
10.1002/bip.360290125
) / BIOPOLYMERS (1990) -
DEGRADO, W.F., CURR OPIN STRUC BIOL 1: 984 (1991).
(
10.1016/0959-440X(91)90095-B
) / CURR OPIN STRUC BIOL (1991) -
DWARKI, V.J., BOTH THE BASIC REGION AND THE LEUCINE ZIPPER DOMAIN OF THE CYCLIC-AMP RESPONSE ELEMENT BINDING (CREB) PROTEIN ARE ESSENTIAL FOR TRANSCRIPTIONAL ACTIVATION, EMBO JOURNAL 9: 225 (1990).
(
10.1002/j.1460-2075.1990.tb08099.x
) / EMBO JOURNAL (1990) -
EDELHOCH, H, SPECTROSCOPIC DETERMINATION OF TRYPTOPHAN AND TYROSINE IN PROTEINS, BIOCHEMISTRY 6: 1948 (1967).
(
10.1021/bi00859a010
) / BIOCHEMISTRY (1967) 10.1126/science.2494702
-
HANDEL, T.M., METAL-ION DEPENDENT MODULATION OF THE DYNAMICS OF A DESIGNED PROTEIN, SCIENCE 261: 879 (1993).
(
10.1126/science.8346440
) / SCIENCE (1993) -
Hu, J. C., Progress in Nucleic Acids and Molecular Biology 6: 82 (1992).
(
10.1007/978-3-642-77356-3_5
) / Progress in Nucleic Acids and Molecular Biology (1992) 10.1126/science.2147779
-
HURLEY, J.H., DESIGN AND STRUCTURAL-ANALYSIS OF ALTERNATIVE HYDROPHOBIC CORE PACKING ARRANGEMENTS IN BACTERIOPHAGE-T4 LYSOZYME, JOURNAL OF MOLECULAR BIOLOGY 224: 1143 (1992).
(
10.1016/0022-2836(92)90475-Y
) / JOURNAL OF MOLECULAR BIOLOGY (1992) -
JOHNSON, M.L., ANALYSIS OF DATA FROM THE ANALYTICAL ULTRA-CENTRIFUGE BY NON-LINEAR LEAST-SQUARES TECHNIQUES, BIOPHYSICAL JOURNAL 36: 575 (1981).
(
10.1016/S0006-3495(81)84753-4
) / BIOPHYSICAL JOURNAL (1981) 10.1107/S0021889878013308
-
KOUZARIDES, T, THE ROLE OF THE LEUCINE ZIPPER IN THE FOS JUN INTERACTION, NATURE 336: 646 (1988).
(
10.1038/336646a0
) / NATURE (1988) 10.1126/science.3289117
-
LAU, K.F., A LATTICE STATISTICAL-MECHANICS MODEL OF THE CONFORMATIONAL AND SEQUENCE-SPACES OF PROTEINS, MACROMOLECULES 22: 3986 (1989).
(
10.1021/ma00200a030
) / MACROMOLECULES (1989) - Laue, T. M., Analytical Ultracentrifugation in Biochemistry and Polymer Science: 90 (1992). / Analytical Ultracentrifugation in Biochemistry and Polymer Science (1992)
-
LIM, W.A., THE ROLE OF INTERNAL PACKING INTERACTIONS IN DETERMINING THE STRUCTURE AND STABILITY OF A PROTEIN, JOURNAL OF MOLECULAR BIOLOGY 219: 359 (1991).
(
10.1016/0022-2836(91)90570-V
) / JOURNAL OF MOLECULAR BIOLOGY (1991) 10.1126/science.1502559
10.1126/science.8446897
- LUMB K.J. unpublished data.
10.1126/science.2237416
-
MERUTKA, G, EFFECT OF AMINO-ACID ION-PAIRS ON PEPTIDE HELICITY, BIOCHEMISTRY 30: 1591 (1991).
(
10.1021/bi00220a021
) / BIOCHEMISTRY (1991) -
NEUBERG, M, 2 FUNCTIONALLY DIFFERENT REGIONS IN FOS ARE REQUIRED FOR THE SEQUENCE-SPECIFIC DNA INTERACTION OF THE FOS JUN PROTEIN COMPLEX, NATURE 338: 589 (1989).
(
10.1038/338589a0
) / NATURE (1989) -
OAS, T. G., BIOCHEMISTRY-US 29: 2891 (1990).
(
10.1021/bi00464a001
) / BIOCHEMISTRY-US (1990) 10.1126/science.2237415
10.1126/science.2911757
10.1126/science.1948029
-
PADMANABHAN, S, RELATIVE HELIX-FORMING TENDENCIES OF NONPOLAR AMINO-ACIDS, NATURE 344: 268 (1990).
(
10.1038/344268a0
) / NATURE (1990) -
PETERANDERL, R, TRIMERIZATION OF THE HEAT-SHOCK TRANSCRIPTION FACTOR BY A TRIPLE-STRANDED ALPHA-HELICAL COILED-COIL, BIOCHEMISTRY 31: 12272 (1992).
(
10.1021/bi00163a042
) / BIOCHEMISTRY (1992) -
PONDER, J.W., TERTIARY TEMPLATES FOR PROTEINS - USE OF PACKING CRITERIA IN THE ENUMERATION OF ALLOWED SEQUENCES FOR DIFFERENT STRUCTURAL CLASSES, JOURNAL OF MOLECULAR BIOLOGY 193: 775 (1987).
(
10.1016/0022-2836(87)90358-5
) / JOURNAL OF MOLECULAR BIOLOGY (1987) 10.1126/science.8421783
-
RALEIGH, D.P., A DENOVO DESIGNED PROTEIN SHOWS A THERMALLY INDUCED TRANSITION FROM A NATIVE TO A MOLTEN GLOBULE-LIKE STATE, JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 114: 10079 (1992).
(
10.1021/ja00051a061
) / JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (1992) -
RANSONE, L.J., FOS-JUN INTERACTION - MUTATIONAL ANALYSIS OF THE LEUCINE ZIPPER DOMAIN OF BOTH PROTEINS, GENES & DEVELOPMENT 3: 770 (1989).
(
10.1101/gad.3.6.770
) / GENES & DEVELOPMENT (1989) -
SCHUERMANN, M, THE LEUCINE REPEAT MOTIF IN FOS PROTEIN MEDIATES COMPLEX-FORMATION WITH JUN AP-1 AND IS REQUIRED FOR TRANSFORMATION, CELL 56: 507 (1989).
(
10.1016/0092-8674(89)90253-5
) / CELL (1989) -
SHORTLE, D, CONTRIBUTIONS OF THE LARGE HYDROPHOBIC AMINO-ACIDS TO THE STABILITY OF STAPHYLOCOCCAL NUCLEASE, BIOCHEMISTRY 29: 8033 (1990).
(
10.1021/bi00487a007
) / BIOCHEMISTRY (1990) -
SIKORSKI, A, MONTE-CARLO STUDIES ON EQUILIBRIUM GLOBULAR PROTEIN FOLDING .3. THE 4 HELIX BUNDLE, BIOPOLYMERS 28: 1097 (1989).
(
10.1002/bip.360280605
) / BIOPOLYMERS (1989) -
SORGER, P.K., TRIMERIZATION OF A YEAST TRANSCRIPTIONAL ACTIVATOR VIA A COILED-COIL MOTIF, CELL 59: 807 (1989).
(
10.1016/0092-8674(89)90604-1
) / CELL (1989) - STITES, W.E., IN A STAPHYLOCOCCAL NUCLEASE MUTANT THE SIDE-CHAIN OF A LYSINE REPLACING VALINE-66 IS FULLY BURIED IN THE HYDROPHOBIC CORE, JOURNAL OF MOLECULAR BIOLOGY 221: 7 (1991). / JOURNAL OF MOLECULAR BIOLOGY (1991)
-
TRONRUD, D.E., AN EFFICIENT GENERAL-PURPOSE LEAST-SQUARES REFINEMENT PROGRAM FOR MACROMOLECULAR STRUCTURES, ACTA CRYSTALLOGRAPHICA SECTION A 43: 489 (1987).
(
10.1107/S0108767387099124
) / ACTA CRYSTALLOGRAPHICA SECTION A (1987) 10.1126/science.2494701
-
WEIS, W.I., REFINEMENT OF THE INFLUENZA-VIRUS HEMAGGLUTININ BY SIMULATED ANNEALING, JOURNAL OF MOLECULAR BIOLOGY 212: 737 (1990).
(
10.1016/0022-2836(90)90234-D
) / JOURNAL OF MOLECULAR BIOLOGY (1990) 10.1038/289366a0
-
ZHU, B.Y., PACKING AND HYDROPHOBICITY EFFECTS ON PROTEIN FOLDING AND STABILITY - EFFECTS OF BETA-BRANCHED AMINO-ACIDS, VALINE AND ISOLEUCINE, ON THE FORMATION AND STABILITY OF 2-STRANDED ALPHA-HELICAL COILED COILS LEUCINE ZIPPERS, PROTEIN SCIENCE 2: 383 (1993).
(
10.1002/pro.5560020310
) / PROTEIN SCIENCE (1993)
Dates
Type | When |
---|---|
Created | 18 years, 10 months ago (Oct. 5, 2006, 7:05 p.m.) |
Deposited | 1 year, 7 months ago (Jan. 15, 2024, 5:40 a.m.) |
Indexed | 2 weeks, 2 days ago (Aug. 7, 2025, 4:55 p.m.) |
Issued | 31 years, 8 months ago (Nov. 26, 1993) |
Published | 31 years, 8 months ago (Nov. 26, 1993) |
Published Print | 31 years, 8 months ago (Nov. 26, 1993) |
@article{Harbury_1993, title={A Switch Between Two-, Three-, and Four-stranded Coiled Coils in GCN4 Leucine Zipper Mutants}, volume={262}, ISSN={1095-9203}, url={http://dx.doi.org/10.1126/science.8248779}, DOI={10.1126/science.8248779}, number={5138}, journal={Science}, publisher={American Association for the Advancement of Science (AAAS)}, author={Harbury, Pehr B. and Zhang, Tao and Kim, Peter S. and Alber, Tom}, year={1993}, month=nov, pages={1401–1407} }