Abstract
Plants and filamentous fungi share with mammals enzymes responsible for DNA methylation. In these organisms, DNA methylation is associated with gene silencing and transposon control. However, plants and fungi differ from mammals in the genomic distribution, sequence specificity, and heritability of methylation. We consider the role that transposons play in establishing methylation patterns and the epigenetic consequences of their perturbation.
References
97
Referenced
388
-
Wolffe A. P., Matzke M. A., Science 286, 481 (1999).
(
10.1126/science.286.5439.481
) / Science by Wolffe A. P. (1999) -
P. D. Rabinowicz et al. Nature Genet. 23 305 (1999).
(
10.1038/15479
) -
Colot V., Rossignol J. L., Bioessays 21, 402 (1999).
(
10.1002/(SICI)1521-1878(199905)21:5<402::AID-BIES7>3.0.CO;2-B
) / Bioessays by Colot V. (1999) 10.1016/S0168-9525(97)01181-5
- International Human Genome Sequencing Consortium Nature 409 860 (2001).
- N. V. Fedoroff in Mobile DNA D. Berg M. Howe Eds. (American Society for Microbiology Washington DC 1989) pp. 375–411.
-
Barkan A., Martienssen R. A., Proc. Natl. Acad. Sci. U.S.A. 88, 3502 (1991).
(
10.1073/pnas.88.8.3502
) / Proc. Natl. Acad. Sci. U.S.A. by Barkan A. (1991) -
Settles A. M., Baron A., Barkan A., Martienssen R. A., Genetics 157, 349 (2001).
(
10.1093/genetics/157.1.349
) / Genetics by Settles A. M. (2001) -
Cambareri E. B., Foss H. M., Rountree M. R., Selker E. U., Kinsey J. A., Genetics 143, 137 (1996).
(
10.1093/genetics/143.1.137
) / Genetics by Cambareri E. B. (1996) -
Morgan H. D., Sutherland H. G., Martin D. I., Whitelaw E., Nature Genet. 23, 314 (1999).
(
10.1038/15490
) / Nature Genet. by Morgan H. D. (1999) - D. Berg M. Howe Eds. Mobile DNA (American Society for Microbiology Washington DC 1989).
-
T. Belenkaya et al. Mol. Gen. Genet. 259 79 (1998).
(
10.1007/s004380050791
) -
Kiger A. A., Gigliotti S., Fuller M. T., Genetics 153, 799 (1999).
(
10.1093/genetics/153.2.799
) / Genetics by Kiger A. A. (1999) -
Martienssen R., Trends Genet. 14, 263 (1998).
(
10.1016/S0168-9525(98)01518-2
) / Trends Genet. by Martienssen R. (1998) -
Chandler V. L., Eggleston W. B., Dorweiler J. E., Plant Mol. Biol. 43, 121 (2000).
(
10.1023/A:1006499808317
) / Plant Mol. Biol. by Chandler V. L. (2000) - Schwartz D., Maize Genet. Coop. Newsl. 63, 42 (1989). / Maize Genet. Coop. Newsl. by Schwartz D. (1989)
-
Martienssen R., Curr. Biol. 6, 810 (1996).
(
10.1016/S0960-9822(02)00601-2
) / Curr. Biol. by Martienssen R. (1996) -
Matzke M., Matzke A., Eggleston W. B., Trends Plant Sci. 1, 5586 (1996).
(
10.1016/S1360-1385(96)80313-X
) / Trends Plant Sci. by Matzke M. (1996) -
J. E. Dorweiler et al. Plant Cell 12 2101 (2000).
(
10.2307/3871108
) -
Matzke M. A., Mette M. F., Matzke A. J., Plant Mol. Biol. 43, 401 (2000).
(
10.1023/A:1006484806925
) / Plant Mol. Biol. by Matzke M. A. (2000) 10.1126/science.277.5329.1100
-
Melquist S., Luff B., Bender J., Genetics 153, 401 (1999).
(
10.1093/genetics/153.1.401
) / Genetics by Melquist S. (1999) -
Luff B., Pawlowski L., Bender J., Mol. Cell 3, 505 (1999).
(
10.1016/S1097-2765(00)80478-5
) / Mol. Cell by Luff B. (1999) -
Selker E. U., Trends Genet. 13, 296 (1997).
(
10.1016/S0168-9525(97)01201-8
) / Trends Genet. by Selker E. U. (1997) -
Rossignol J. L., Faugeron G., Experientia 50, 307 (1994).
(
10.1007/BF01924014
) / Experientia by Rossignol J. L. (1994) -
Rhounim L., Rossignol J. L., Faugeron G., EMBO J. 11, 4451 (1992).
(
10.1002/j.1460-2075.1992.tb05546.x
) / EMBO J. by Rhounim L. (1992) -
Irelan J. T., Selker E. U., Genetics 146, 509 (1997).
(
10.1093/genetics/146.2.509
) / Genetics by Irelan J. T. (1997) -
Barry C., Faugeron G., Rossignol J. L., Proc. Natl. Acad. Sci. U.S.A. 90, 4557 (1993).
(
10.1073/pnas.90.10.4557
) / Proc. Natl. Acad. Sci. U.S.A. by Barry C. (1993) -
Rountree M. R., Selker E. U., Genes Dev. 11, 2383 (1997).
(
10.1101/gad.11.18.2383
) / Genes Dev. by Rountree M. R. (1997) -
Miao V. P., Freitag M., Selker E. U., J. Mol. Biol. 300, 249 (2000).
(
10.1006/jmbi.2000.3864
) / J. Mol. Biol. by Miao V. P. (2000) -
Colot V., Maloisel L., Rossignol J. L., Cell 86, 855 (1996).
(
10.1016/S0092-8674(00)80161-0
) / Cell by Colot V. (1996) -
Goyon C., Rossignol J. L., Faugeron G., Nucleic Acids Res. 24, 3348 (1996).
(
10.1093/nar/24.17.3348
) / Nucleic Acids Res. by Goyon C. (1996) 10.1093/hmg/9.16.2395
-
Malagnac F., Gregoire A., Goyon C., Rossignol J. L., Faugeron G., Mol. Microbiol. 31, 331 (1999).
(
10.1046/j.1365-2958.1999.01177.x
) / Mol. Microbiol. by Malagnac F. (1999) -
F. Malagnac et al. Cell 91 281 (1997).
(
10.1016/S0092-8674(00)80410-9
) - E. Kouzminova E. U. Selker EMBO J. in press.
-
The Arabidopsis Genome Initiative Nature 408 796 (2000).
(
10.1038/35048692
) 10.1023/A:1006427226972
10.1073/pnas.93.16.8449
10.1126/science.273.5275.654
10.1126/science.8316832
- E. Richards personal communication.
10.1093/genetics/149.1.307
-
A. M. Lindroth et al. Science 292 2077 (2001).
(
10.1126/science.1059745
) -
Bartee L., Malagnac F., Bender J., Genes Dev. 15, 1753 (2001).
(
10.1101/gad.905701
) / Genes Dev. by Bartee L. (2001) - C. M. Papa N. M. Springer M. G. Muszynski R. Meeley S. M. Kaeppler Plant Cell in press.
-
X. Cao et al. Proc. Natl. Acad. Sci. U.S.A. 97 4979. (2000).
(
10.1073/pnas.97.9.4979
) -
A. Dong et al. Nucleic Acids Res. 29 439 (2001).
(
10.1093/nar/29.2.439
) 10.1038/8803
10.1016/S0092-8674(00)81656-6
-
G. L. Xu et al. Nature 402 187 (1999).
(
10.1038/46052
) 10.1016/S0960-9822(00)00324-9
10.1073/pnas.93.22.12406
-
J. W. Soppe et al. Mol. Cell 6 791 (2000).
(
10.1016/S1097-2765(00)00078-2
) -
A. Miura et al. Nature 411 212 (2001).
(
10.1038/35075612
) 10.1101/gad.193701
-
Amedeo P., Habu Y., Afsar K., Scheid O. M., Paszkowski J., Nature 405, 203 (2000).
(
10.1038/35012108
) / Nature by Amedeo P. (2000) -
Dorer D. R., Henikoff S., Genetics 147, 1181 (1997).
(
10.1093/genetics/147.3.1181
) / Genetics by Dorer D. R. (1997) 10.1101/SQB.1951.016.01.004
- CSHL/WUGSC/PEB Arabidopsis Sequencing Consortium Cell 100 377 (2000).
-
Mittelsten-Scheid O., Afsar K., Pazkowski J., Proc. Natl. Acad. Sci. U.S.A. 95, 632 (1998).
(
10.1073/pnas.95.2.632
) / Proc. Natl. Acad. Sci. U.S.A. by Mittelsten-Scheid O. (1998) 10.1016/S0960-9822(00)00862-9
-
Furner I. J., Sheikh M. A., Collett C. E., Genetics 149, 651 (1998).
(
10.1093/genetics/149.2.651
) / Genetics by Furner I. J. (1998) 10.1101/gad.12.11.1714
-
Bartee L., Bender J., Nucleic Acids Res. 29, 2127 (2001).
(
10.1093/nar/29.10.2127
) / Nucleic Acids Res. by Bartee L. (2001) 10.1038/74542
10.1038/35030169
-
Finnegan E. J., Wang M., Waterhouse P., Curr. Biol. 11, R99 (2001).
(
10.1016/S0960-9822(01)00039-2
) / Curr. Biol. by Finnegan E. J. (2001) -
Habu Y., Kakutani T., Paszkowski J., Curr. Opin. Genet. Dev. 11, 215 (2001).
(
10.1016/S0959-437X(00)00182-9
) / Curr. Opin. Genet. Dev. by Habu Y. (2001) 10.1023/A:1006479327881
10.1126/science.1063051
-
Bender J., Trends Biochem. Sci. 23, 252 (1998).
(
10.1016/S0968-0004(98)01225-0
) / Trends Biochem. Sci. by Bender J. (1998) 10.1016/S0092-8674(00)80725-4
-
Raizada M. N., Benito M. I., Walbot V., Plant J. 25, 79 (2001).
(
10.1111/j.1365-313X.2001.00939.x
) / Plant J. by Raizada M. N. (2001) 10.1016/S0092-8674(00)81645-1
-
H. Tabara et al. Cell 99 123 (1999).
(
10.1016/S0092-8674(00)81644-X
) -
B. H. Ramsahoye et al. Proc. Natl. Acad. Sci. U.S.A. 97 5237 (2000).
(
10.1073/pnas.97.10.5237
) -
Svoboda P., Stein P., Hayashi H., Schultz R. M., Development 127, 4147 (2000).
(
10.1242/dev.127.19.4147
) / Development by Svoboda P. (2000) -
C. Cogoni et al. EMBO J. 15 3153 (1996).
(
10.1002/j.1460-2075.1996.tb00678.x
) -
Faugeron G., Curr. Opin. Microbiol. 3, 144 (2000).
(
10.1016/S1369-5274(00)00066-7
) / Curr. Opin. Microbiol. by Faugeron G. (2000) -
L. Jackson-Grusby et al. Nature Genet. 27 31 (2001).
(
10.1038/83730
) 10.1038/35003595
-
Springer P. S., Holding D. R., Groover A., Yordan C., Martienssen R. A., Development 127, 1815 (2000).
(
10.1242/dev.127.9.1815
) / Development by Springer P. S. (2000) -
J. P. Vielle-Calzada et al. Genes Dev. 13 2971 (1999).
(
10.1101/gad.13.22.2971
) -
R. Vinkenoog et al. Plant Cell 12 2271 (2000).
(
10.2307/3871120
) -
Adams S., Vinkenoog R., Spielman M., Dickinson H. G., Scott R. J., Development 127, 2493 (2000).
(
10.1242/dev.127.11.2493
) / Development by Adams S. (2000) -
Byrne M., Timmermans M., Kidner C., Martienssen R., Curr. Opin. Plant Biol. 4, 38 (2001).
(
10.1016/S1369-5266(00)00133-3
) / Curr. Opin. Plant Biol. by Byrne M. (2001) 10.1128/MCB.18.9.5465
-
P. SanMiguel et al. Science 274 765 (1996).
(
10.1126/science.274.5288.765
) -
Mauricio R., Nature Rev. Genet. 2, 370 (2001).
(
10.1038/35072085
) / Nature Rev. Genet. by Mauricio R. (2001) -
Cubas P., Vincent C., Coen E., Nature 401, 157 (1999).
(
10.1038/43657
) / Nature by Cubas P. (1999) -
Martienssen R., Curr. Opin. Genet. Dev. 8, 240 (1998).
(
10.1016/S0959-437X(98)80147-0
) / Curr. Opin. Genet. Dev. by Martienssen R. (1998) -
Chen Z. J., Pikaard C. S., Genes Dev. 11, 2124 (1997).
(
10.1101/gad.11.16.2124
) / Genes Dev. by Chen Z. J. (1997) -
L. Comai et al. Plant Cell 12 1551 (2000).
(
10.2307/3871173
) -
Lee H. S., Chen Z. J., Proc. Natl. Acad. Sci. U.S.A. 98, 6753 (2001).
(
10.1073/pnas.121064698
) / Proc. Natl. Acad. Sci. U.S.A. by Lee H. S. (2001) - We thank E. Selker E. Richards V. Chandler S. Kaeppler S. Jacobsen and J. Bender for communicating results prior to publication two anonymous referees for suggestions for improvement and our colleagues for many interesting discussions. R.M. and V.C. receive grant support from the NSF (DBI 1057338).
- {newshr}Review
Dates
Type | When |
---|---|
Created | 23 years, 1 month ago (July 27, 2002, 5:39 a.m.) |
Deposited | 1 year, 7 months ago (Jan. 13, 2024, 3:46 a.m.) |
Indexed | 3 weeks, 6 days ago (Aug. 5, 2025, 8:28 a.m.) |
Issued | 24 years ago (Aug. 10, 2001) |
Published | 24 years ago (Aug. 10, 2001) |
Published Print | 24 years ago (Aug. 10, 2001) |
@article{Martienssen_2001, title={DNA Methylation and Epigenetic Inheritance in Plants and Filamentous Fungi}, volume={293}, ISSN={1095-9203}, url={http://dx.doi.org/10.1126/science.293.5532.1070}, DOI={10.1126/science.293.5532.1070}, number={5532}, journal={Science}, publisher={American Association for the Advancement of Science (AAAS)}, author={Martienssen, Robert A. and Colot, Vincent}, year={2001}, month=aug, pages={1070–1074} }