Abstract
The inability to localize and measure the free energy of protein structure and structure change severely limits protein structure-function investigations. The local unfolding model for protein hydrogen exchange quantitatively relates the free energy of local structural stability with the hydrogen exchange rate of concerted sets of structurally related protons. In tests with a number of modified hemoglobin forms, the loss in structural free energy obtained locally from hydrogen exchange results matches the loss in allosteric free energy measured globally by oxygen-binding and subunit dissociation experiments.
References
29
Referenced
60
10.1126/science.1553532
-
ALLEWELL, N.M., HYDROGEN-EXCHANGE STUDIES OF PROTEINS - RECENT ADVANCES IN MEDIUM AND HIGH-RESOLUTION METHODS, JOURNAL OF BIOCHEMICAL AND BIOPHYSICAL METHODS 7: 345 (1983).
(
10.1016/0165-022X(83)90060-X
) / JOURNAL OF BIOCHEMICAL AND BIOPHYSICAL METHODS (1983) -
BALDWIN, J, HEMOGLOBIN - STRUCTURAL-CHANGES RELATED TO LIGAND-BINDING AND ITS ALLOSTERIC MECHANISM, JOURNAL OF MOLECULAR BIOLOGY 129: 175 (1979).
(
10.1016/0022-2836(79)90277-8
) / JOURNAL OF MOLECULAR BIOLOGY (1979) -
BERGER, A, ARCH BIOCHEM BIOPHYS 69: 106 (1957).
(
10.1016/0003-9861(57)90478-2
) / ARCH BIOCHEM BIOPHYS (1957) -
EIGEN, M, ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 3: 1 (1964).
(
10.1002/anie.196400011
) / ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (1964) -
ENGLANDER, J.J., PROTEIN HYDROGEN-EXCHANGE STUDIED BY THE FRAGMENT SEPARATION METHOD, ANALYTICAL BIOCHEMISTRY 147: 234 (1985).
(
10.1016/0003-2697(85)90033-8
) / ANALYTICAL BIOCHEMISTRY (1985) -
ENGLANDER, J.J., IDENTIFICATION OF AN ALLOSTERICALLY SENSITIVE UNFOLDING UNIT IN HEMOGLOBIN, JOURNAL OF MOLECULAR BIOLOGY 169: 325 (1983).
(
10.1016/S0022-2836(83)80186-7
) / JOURNAL OF MOLECULAR BIOLOGY (1983) -
ENGLANDER, S.W., MEASUREMENT OF STRUCTURAL AND FREE-ENERGY CHANGES IN HEMOGLOBIN BY HYDROGEN-EXCHANGE METHODS, ANNALS OF THE NEW YORK ACADEMY OF SCIENCES 244: 10 (1975).
(
10.1111/j.1749-6632.1975.tb41518.x
) / ANNALS OF THE NEW YORK ACADEMY OF SCIENCES (1975) -
ENGLANDER, S.W., PROTEIN FOLDING STUDIED USING HYDROGEN-EXCHANGE LABELING AND 2-DIMENSIONAL NMR, ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE 21: 243 (1992).
(
10.1146/annurev.bb.21.060192.001331
) / ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE (1992) -
ENGLANDER, S.W., INDIVIDUAL BREATHING REACTIONS MEASURED IN HEMOGLOBIN BY HYDROGEN-EXCHANGE METHODS, BIOPHYSICAL JOURNAL 32: 577 (1980).
(
10.1016/S0006-3495(80)84991-5
) / BIOPHYSICAL JOURNAL (1980) - Englander, S. W., Structure and Dynamics of Nucleic Acids and Proteins: 421 (1983). / Structure and Dynamics of Nucleic Acids and Proteins (1983)
-
HVIDT, A, ADV PROTEIN CHEM 21: 287 (1966).
(
10.1016/S0065-3233(08)60129-1
) / ADV PROTEIN CHEM (1966) -
IP, SHC, THERMODYNAMIC STUDIES ON SUBUNIT ASSEMBLY IN HUMAN HEMOGLOBIN - TEMPERATURE-DEPENDENCE OF DIMER-TETRAMER ASSOCIATION CONSTANTS FOR OXYGENATED AND UNLIGANDED HEMOGLOBINS, JOURNAL OF BIOLOGICAL CHEMISTRY 252: 82 (1977).
(
10.1016/S0021-9258(17)32801-6
) / JOURNAL OF BIOLOGICAL CHEMISTRY (1977) 10.1021/bi00865a047
-
KUWAJIMA, K, EXCHANGE BEHAVIOR OF THE H-BONDED AMIDE PROTONS IN THE 3 TO 13 HELIX OF RIBONUCLEASE-S, JOURNAL OF MOLECULAR BIOLOGY 169: 299 (1983).
(
10.1016/S0022-2836(83)80185-5
) / JOURNAL OF MOLECULAR BIOLOGY (1983) -
LOUIE, G, ALLOSTERIC ENERGY AT THE HEMOGLOBIN BETA-CHAIN-C TERMINUS STUDIED BY HYDROGEN-EXCHANGE, JOURNAL OF MOLECULAR BIOLOGY 201: 755 (1988).
(
10.1016/0022-2836(88)90472-X
) / JOURNAL OF MOLECULAR BIOLOGY (1988) -
LOUIE, G, SALT, PHOSPHATE AND THE BOHR EFFECT AT THE HEMOGLOBIN BETA-CHAIN-C TERMINUS STUDIED BY HYDROGEN-EXCHANGE, JOURNAL OF MOLECULAR BIOLOGY 201: 765 (1988).
(
10.1016/0022-2836(88)90473-1
) / JOURNAL OF MOLECULAR BIOLOGY (1988) -
MAIN, E.L., J BIOL CHEM 255: 10695 (1980).
(
10.1016/S0021-9258(19)70363-9
) / J BIOL CHEM (1980) -
MCKINNIE, R.E., HYDROGEN-EXCHANGE LABELING STUDY OF THE ALLOSTERIC R-STATE TO T-STATE EQUILIBRIUM IN METHEMOGLOBIN, CHEMICAL PHYSICS 158: 283 (1991).
(
10.1016/0301-0104(91)87072-4
) / CHEMICAL PHYSICS (1991) -
MILLS, F.C., THERMODYNAMIC STUDIES ON THE OXYGENATION AND SUBUNIT ASSOCIATION OF HUMAN-HEMOGLOBIN - TEMPERATURE-DEPENDENCE OF THE LINKAGE BETWEEN DIMER-TETRAMER ASSOCIATION AND OXYGENATION STATE, JOURNAL OF BIOLOGICAL CHEMISTRY 254: 2881 (1979).
(
10.1016/S0021-9258(17)30155-2
) / JOURNAL OF BIOLOGICAL CHEMISTRY (1979) -
MONOD, J, JOURNAL OF MOLECULAR BIOLOGY 12: 88 (1965).
(
10.1016/S0022-2836(65)80285-6
) / JOURNAL OF MOLECULAR BIOLOGY (1965) -
PERUTZ, M.F., STEREOCHEMISTRY OF COOPERATIVE EFFECTS IN HAEMOGLOBIN, NATURE 228: 726 (1970).
(
10.1038/228726a0
) / NATURE (1970) -
RAY, J, ALLOSTERIC SENSITIVITY IN HEMOGLOBIN AT THE ALPHA-SUBUNIT N-TERMINUS STUDIED BY HYDROGEN-EXCHANGE, BIOCHEMISTRY 25: 3000 (1986).
(
10.1021/bi00358a040
) / BIOCHEMISTRY (1986) -
ROGERO, J. R., Individual breathing reactions measured by functional labeling and hydrogen exchange methods, METHODS IN ENZYMOLOGY 131: 508 (1986).
(
10.1016/0076-6879(86)31053-X
) / METHODS IN ENZYMOLOGY / Individual breathing reactions measured by functional labeling and hydrogen exchange methods (1986) -
ROSA, J.J., EXPERIMENTAL PROCEDURE FOR INCREASING THE STRUCTURAL RESOLUTION OF CHEMICAL HYDROGEN-EXCHANGE MEASUREMENTS ON PROTEINS - APPLICATION TO RIBONUCLEASE S-PEPTIDE, JOURNAL OF MOLECULAR BIOLOGY 133: 399 (1979).
(
10.1016/0022-2836(79)90400-5
) / JOURNAL OF MOLECULAR BIOLOGY (1979) - TURNER G.J. THESIS J HOPKINS U B (1989).
-
WAGNER, G, AMIDE PROTON-EXCHANGE AND SURFACE CONFORMATION OF THE BASIC PANCREATIC TRYPSIN-INHIBITOR IN SOLUTION - STUDIES WITH TWO-DIMENSIONAL NUCLEAR MAGNETIC-RESONANCE, JOURNAL OF MOLECULAR BIOLOGY 160: 343 (1982).
(
10.1016/0022-2836(82)90180-2
) / JOURNAL OF MOLECULAR BIOLOGY (1982) -
WAND, A.J., TWO-DIMENSIONAL H-1-NMR STUDIES OF CYTOCHROME-C - HYDROGEN-EXCHANGE IN THE N-TERMINAL HELIX, BIOCHEMISTRY 25: 1107 (1986).
(
10.1021/bi00353a025
) / BIOCHEMISTRY (1986) 10.1016/S0065-3233(08)60190-4
Dates
Type | When |
---|---|
Created | 18 years, 10 months ago (Oct. 5, 2006, 7:03 p.m.) |
Deposited | 1 year, 7 months ago (Jan. 12, 2024, 6:28 p.m.) |
Indexed | 1 year ago (Aug. 19, 2024, 11:12 a.m.) |
Issued | 33 years, 2 months ago (June 19, 1992) |
Published | 33 years, 2 months ago (June 19, 1992) |
Published Print | 33 years, 2 months ago (June 19, 1992) |
@article{Englander_1992, title={Hydrogen Exchange Measurement of the Free Energy of Structural and Allosteric Change in Hemoglobin}, volume={256}, ISSN={1095-9203}, url={http://dx.doi.org/10.1126/science.256.5064.1684}, DOI={10.1126/science.256.5064.1684}, number={5064}, journal={Science}, publisher={American Association for the Advancement of Science (AAAS)}, author={Englander, S. Walter and Englander, Joan J. and McKinnie, Russell E. and Ackers, Gary K. and Turner, George J. and Westrick, Judy A. and Gill, Stanley J.}, year={1992}, month=jun, pages={1684–1687} }