Crossref journal-article
Wiley
Journal of Microscopy (311)
Abstract

SummaryTransmission electron microscopy imaging protocols required by structural scientists vary widely and can be laborious without tailor‐made applications. We present here the jeol automated microscopy expert system (james) api integrator, a programming library for computer control of transmission electron microscopy operations and equipment. james has been implemented on JEOL microscopes with Gatan CCDs but is designed to be modular so it can be adapted to run on different microscopes and detectors. We have used the james api integrator to develop two applications for low‐dose digital imaging: james imaging application and the mr t tomographic imaging application. Both applications have been widely used within our NCRR‐supported Center for routine data collection and are now made available for public download.

Bibliography

MARSH, M. P., CHANG, J. T., BOOTH, C. R., LIANG, N. L., SCHMID, M. F., & CHIU, W. (2007). Modular software platform for low‐dose electron microscopy and tomography. Journal of Microscopy, 228(3), 384–389. Portico.

Authors 6
  1. MICHAEL P. MARSH (first)
  2. JUAN T. CHANG (additional)
  3. CHRISTOPHER R. BOOTH (additional)
  4. NATHAN L. LIANG (additional)
  5. MICHAEL F. SCHMID (additional)
  6. WAH CHIU (additional)
References 31 Referenced 11
  1. 10.1016/j.jsb.2004.02.004
  2. 10.1017/S1431927605504501
  3. 10.1016/j.str.2006.05.007
  4. 10.1128/JVI.02053-06
  5. {'key': 'e_1_2_6_6_1', 'first-page': '27', 'article-title': 'A system for automated electron tomography using Philips CM series transmission electron microscopes', 'volume': '134', 'author': 'Daberkow I.', 'year': '1996', 'journal-title': 'Philips Electron Opt. Bull.'} / Philips Electron Opt. Bull. / A system for automated electron tomography using Philips CM series transmission electron microscopes by Daberkow I. (1996)
  6. 10.1017/S1431927600038216 / Microsc. Microanal. / Computer controlled high‐throughput integration system: fastem by Fukushima K. (2000)
  7. 10.1016/j.jsb.2006.07.003
  8. 10.1038/nature04487
  9. 10.1128/JVI.01347-06
  10. 10.1093/emboj/20.20.5636
  11. 10.1016/S0092-8674(03)00807-9
  12. 10.1017/S1431927603030575
  13. 10.1016/j.str.2004.05.006
  14. 10.1016/j.str.2005.06.005
  15. 10.1038/sj.emboj.7600327
  16. 10.1182/blood.V106.11.1658.1658 / Blood / The 3‐dimensional architecture of platelets in the native state by electron cryotomography by Marsh M.P. (2005)
  17. 10.1128/JVI.01471-06
  18. 10.1016/j.jsb.2005.07.007
  19. 10.1126/science.1076184
  20. 10.1016/j.ultramic.2005.02.003
  21. 10.1016/S0091-679X(06)79027-6
  22. 10.1016/j.jsb.2004.10.006
  23. 10.1016/j.jmb.2007.02.046
  24. 10.1016/S0304-3991(99)00043-1
  25. 10.1006/jsbi.2001.4330
  26. 10.1016/0304-3991(84)90057-3
  27. 10.1016/j.jsb.2006.04.005
  28. 10.1016/j.str.2005.09.006
  29. 10.1016/S1047-8477(03)00124-2
  30. 10.1016/j.jsb.2006.06.005
  31. 10.1046/j.0022-2720.2001.00987.x
Dates
Type When
Created 17 years, 8 months ago (Dec. 4, 2007, 12:47 a.m.)
Deposited 1 year, 10 months ago (Oct. 12, 2023, 8:22 a.m.)
Indexed 2 months, 1 week ago (June 14, 2025, 11:29 a.m.)
Issued 17 years, 8 months ago (Nov. 27, 2007)
Published 17 years, 8 months ago (Nov. 27, 2007)
Published Online 17 years, 8 months ago (Nov. 27, 2007)
Published Print 17 years, 8 months ago (Dec. 1, 2007)
Funders 0

None

@article{MARSH_2007, title={Modular software platform for low‐dose electron microscopy and tomography}, volume={228}, ISSN={1365-2818}, url={http://dx.doi.org/10.1111/j.1365-2818.2007.01856.x}, DOI={10.1111/j.1365-2818.2007.01856.x}, number={3}, journal={Journal of Microscopy}, publisher={Wiley}, author={MARSH, MICHAEL P. and CHANG, JUAN T. and BOOTH, CHRISTOPHER R. and LIANG, NATHAN L. and SCHMID, MICHAEL F. and CHIU, WAH}, year={2007}, month=nov, pages={384–389} }