DOI: 10.1110/ps.9.7.1399. Decoys ‘R’ Us: A database of incorrect conformations to improve protein structure prediction

Decoys ‘R’ Us: A database of incorrect conformations to improve protein structure prediction

10.1110/ps.9.7.1399

Crossref journal-article

Wiley

Protein Science (311)

Abstract

AbstractThe development of an energy or scoring function for protein structure prediction is greatly enhanced by testing the func–tion on a set of computer–generated conformations (decoys) to determine whether it can readily distinguish native–like conforma–tions from nonnative ones. We have created “Decoys “R” Us,” a database containing many such sets of conformations, to provide a resource that allows scoring functions to be improved.

Bibliography

Samudrala, R., & Levitt, M. (2000). Decoys âRâ Us: A database of incorrect conformations to improve protein structure prediction. Protein Science, 9(7), 1399â1401. Portico.

Authors 2

Ram Samudrala (first)
Michael Levitt (additional)

References 14 Referenced 183

10.1016/0022-2836(92)91028-N
10.1006/jmbi.1996.0196
10.1006/jmbi.1999.2685
10.1016/0022-2836(84)90049-4
10.1006/jmbi.1996.0809
10.1006/jmbi.1996.0256
10.1006/jmbi.1997.1479
10.1002/(SICI)1097-0134(1999)37:3 <194::AID-PROT24>3.0.CO;2-F
{'key': 'e_1_2_1_10_1', 'first-page': '179', 'volume-title': 'Proceedings of the Pacific Symposium on Biocomputing', 'author': 'Samudrala R', 'year': '2000'} / Proceedings of the Pacific Symposium on Biocomputing by Samudrala R (2000)
10.1002/(SICI)1097-0134(1999)37:3 <171::AID-PROT21>3.0.CO;2-Z
10.1002/(SICI)1097-0134(19990101)34:1<82::AID-PROT7>3.0.CO;2-A
{'key': 'e_1_2_1_13_1', 'first-page': '218', 'volume-title': 'Proceedings of the Fourth International Conference on Intelligent Systems in Molecular Biology', 'author': 'Subramaniam S', 'year': '1996'} / Proceedings of the Fourth International Conference on Intelligent Systems in Molecular Biology by Subramaniam S (1996)
10.1073/pnas.92.3.709
10.1016/S0969-2126(99)80085-9

Dates

Type	When
Created	16 years, 6 months ago (Feb. 17, 2009, 3:02 p.m.)
Deposited	1 year, 10 months ago (Oct. 29, 2023, 11:41 a.m.)
Indexed	3 months ago (June 6, 2025, 5:09 a.m.)
Issued	25 years, 8 months ago (Jan. 1, 2000)
Published	25 years, 8 months ago (Jan. 1, 2000)
Published Online	16 years, 8 months ago (Dec. 31, 2008)
Published Print	25 years, 8 months ago (Jan. 1, 2000)

Funders 0

None

BibTeX

@article{Samudrala_2000, title={Decoys ‘R’ Us: A database of incorrect conformations to improve protein structure prediction}, volume={9}, ISSN={1469-896X}, url={http://dx.doi.org/10.1110/ps.9.7.1399}, DOI={10.1110/ps.9.7.1399}, number={7}, journal={Protein Science}, publisher={Wiley}, author={Samudrala, Ram and Levitt, Michael}, year={2000}, month=jan, pages={1399–1401} }

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