Crossref journal-article
Cold Spring Harbor Laboratory
Genes & Development (246)
Abstract

Two independent two-dimensional (2D) gel methods were used to map an origin of replication that is developmentally regulated by the steroid hormone ecdysone, namely an origin for DNA puff amplification in the fungus fly Sciara coprophila. Initiation of replication was found to occur within a small region of no larger than 6 kb by use of the neutral/neutral 2D gel method. Neutral/alkaline 2D gel analyses support the results of the neutral/neutral 2D gels and further define within the origin region an approximately 1-kb area where the majority of replication initiates. This is the first example of an origin of replication in multicellular eukaryotes that has been mapped by 2D gels to such a small defined region. Moreover, replication can be seen by the neutral/alkaline 2D gel method to proceed bidirectionally outward from this replication origin region. These data are consistent with an onion-skin mechanism whereby multiple rounds of DNA replication initiate at a specific origin of replication for Sciara DNA puff amplification.

Bibliography

Liang, C., Spitzer, J. D., Smith, H. S., & Gerbi, S. A. (1993). Replication initiates at a confined region during DNA amplification in Sciara DNA puff II/9A. Genes & Development, 7(6), 1072–1084.

Authors 4
  1. C Liang (first)
  2. J D Spitzer (additional)
  3. H S Smith (additional)
  4. S A Gerbi (additional)
References 54 Referenced 64
  1. 10.1093/nar/20.13.3309
  2. 10.1091/mbc.2.11.875 / Cell Regul. / The promoter of DNA puff gene II/9-1 of Sciara coprophila is inducible by ecdysone in late prepupal salivary glands of Drosophila melanogaster. (1991)
  3. 10.1016/0092-8674(88)90102-X
  4. 10.1007/BF00329733 / Chromosoma / Behavior of polytene chromosomes of Rhynchosciara angelae at different stages of larval development. (1955)
  5. 10.1016/0092-8674(87)90642-8
  6. 10.1002/bies.950130702
  7. 10.1016/0092-8674(90)90270-O
  8. 10.1146/annurev.bi.58.070189.003323
  9. 10.1073/pnas.81.7.1991
  10. 10.1016/0022-2836(73)90115-0
  11. 10.1007/BF01183126
  12. 10.1073/pnas.61.3.971
  13. 10.1002/j.1460-2075.1989.tb03450.x / EMBO J. / Amplification enhancers and replication origins in the autosomal chorion gene cluster of Drosophila melanogaster. (1989)
  14. DePamphilis, M.L. 1987. Replication of simian virus 40 and polyoma virus chromosomes. In Molecular aspects of papovaviruses (ed. Y. Aloni), pp. 1–40. Martinus Nijhoff Publishing, Boston, MA. (10.1007/978-1-4613-2087-6_1)
  15. 10.1016/S0021-9258(18)54104-1 / J. Biol. Chem. / Origins of DNA replication in metazoan chromosomes. (1993)
  16. DePamphilis, M.L. 1993b. Eukaryotic DNA replication: Anatomy of an origin. Annu. Rev. Biochem. (in press). (10.1146/annurev.bi.62.070193.000333)
  17. {'key': '2021111418091206000_7.6.1072.17', 'first-page': '4305', 'article-title': 'The ARS consensus sequence is required for chromosomal origin function in Saccharomyces cerevisiae.', 'volume': '12', 'year': '1992', 'journal-title': 'Mol. Cell. Biol.'} / Mol. Cell. Biol. / The ARS consensus sequence is required for chromosomal origin function in Saccharomyces cerevisiae. (1992)
  18. 10.1016/0022-2836(89)90129-0
  19. {'key': '2021111418091206000_7.6.1072.19', 'first-page': '3715', 'article-title': 'Initiation of DNA replication in the dihydrofolate reductase locus is confined to the early S period in CHO cells synchronized with the plant amino acid mimosine.', 'volume': '12', 'year': '1992', 'journal-title': 'Mol. Cell. Biol.'} / Mol. Cell. Biol. / Initiation of DNA replication in the dihydrofolate reductase locus is confined to the early S period in CHO cells synchronized with the plant amino acid mimosine. (1992)
  20. {'key': '2021111418091206000_7.6.1072.20', 'first-page': '3850', 'article-title': 'Mapping of replication initiation sites in mammalian genomes by two-dimensional gel analysis: stabilization and enrichment of replication intermediates by isolation on the nuclear matrix.', 'volume': '11', 'year': '1991', 'journal-title': 'Mol. Cell Biol.'} / Mol. Cell Biol. / Mapping of replication initiation sites in mammalian genomes by two-dimensional gel analysis: stabilization and enrichment of replication intermediates by isolation on the nuclear matrix. (1991)
  21. {'key': '2021111418091206000_7.6.1072.21', 'first-page': '5346', 'article-title': 'Evidence suggesting that the ARS elements associated with silencers of the yeast mating-tape locus HML do not function as chromosomal DNA replication origins.', 'volume': '11', 'year': '1991', 'journal-title': 'Mol. Cell. Biol.'} / Mol. Cell. Biol. / Evidence suggesting that the ARS elements associated with silencers of the yeast mating-tape locus HML do not function as chromosomal DNA replication origins. (1991)
  22. 10.1146/annurev.cb.07.110191.002111
  23. 10.1016/0092-8674(92)90505-7
  24. 10.1016/0092-8674(91)90468-E
  25. 10.1038/180983a0
  26. 10.1007/BF00321517
  27. 10.1083/jcb.29.2.347
  28. 10.1016/0092-8674(89)90433-9
  29. Hanahan, D. 1985. Techniques for transformation of E. coli. in DNA cloning: A practical approach (ed. D. M. Glover), vol. I, pp. 109–135. IRL Press, Oxford, England.
  30. 10.1016/0076-6879(83)00066-X / Methods Enzymol. / Plasmid screening at high colony density. (1983)
  31. 10.1083/jcb.110.4.903
  32. 10.1016/0092-8674(87)90643-X
  33. {'key': '2021111418091206000_7.6.1072.33', 'first-page': '6373', 'article-title': 'Close association of a DNA replication origin and an ARS element on chromosome III of the yeast, Saccharomyces cerevisiae.', 'volume': '14', 'year': '1988', 'journal-title': 'Nucleic Acids Res.'} / Nucleic Acids Res. / Close association of a DNA replication origin and an ARS element on chromosome III of the yeast, Saccharomyces cerevisiae. (1988)
  34. 10.1093/nar/9.13.2989
  35. {'key': '2021111418091206000_7.6.1072.35', 'first-page': '4927', 'article-title': 'Organization of replication of ribosomal DNA in Saccharomyces cerevisiae.', 'volume': '8', 'year': '1988', 'journal-title': 'Mol. Cell. Biol.'} / Mol. Cell. Biol. / Organization of replication of ribosomal DNA in Saccharomyces cerevisiae. (1988)
  36. 10.1016/0092-8674(90)90258-G
  37. 10.1093/nar/18.3.647
  38. 10.1073/pnas.82.10.3159
  39. Maniatis, T., E.F. Fritsch, and J. Sambrook. 1982. Molecular cloning: A laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York.
  40. 10.1126/science.1536007
  41. 10.1016/0022-2836(91)90357-C
  42. Rasch, E.M. 1970a. Two-wavelength cytophotometry of Sciara salivary gland chromosomes. In Introduction to quantitative cytochemistry (ed. G.L. Wied and G.F. Bahr), vol. 2, pp. 335–355. Academic Press, New York.
  43. Rasch, E.M. 1970b. DNA cytophotometry of salivary gland nuclei and other tissue systems in dipteran larvae. In Introduction to quantitative cytochemistry (ed. G.L. Wied and G.F. Bahr), vol. 2, pp. 357–397. Academic Press, Inc., New York.
  44. 10.1126/science.1585179
  45. 10.1007/BF00326419
  46. {'key': '2021111418091206000_7.6.1072.46', 'first-page': '3078', 'article-title': 'Evidence that replication initiates at only some of the potential origins in each oligomeric form of bovine papillomavirus type 1 DNA.', 'volume': '10', 'year': '1990', 'journal-title': 'Mol. Cell. Biol.'} / Mol. Cell. Biol. / Evidence that replication initiates at only some of the potential origins in each oligomeric form of bovine papillomavirus type 1 DNA. (1990)
  47. 10.1093/nar/19.14.3935
  48. 10.1146/annurev.cb.05.110189.001213
  49. 10.1016/0167-4781(89)90123-1 / Biochim. Biophys. Acta / New beginnings in studies of eukaryotic DNA replication origins. (1989)
  50. 10.1016/0092-8674(90)90071-L
  51. 10.1093/nar/19.22.6255
  52. Wu, N., Liang, C. DiBartolomeis, S.M. Smith, H.S. and Gerbi. S.A. 1993. Developmental progression of DNA puffs in Sciara coprophila: Amplification and transcripton. Dev. Biol. (in press). (10.1006/dbio.1993.1287)
  53. 10.1128/jvi.64.12.5903-5911.1990 / J. Virol. / Replication of bovine papillomavirus type 1 DNA initiates within an E2-responsive enhancer element. (1990)
  54. {'key': '2021111418091206000_7.6.1072.54', 'first-page': '4733', 'article-title': 'Localization of a DNA replication origin and termination zone on chromosome III of Saccharomyces cerevisiae.', 'volume': '12', 'year': '1992', 'journal-title': 'Mol. Cell. Biol.'} / Mol. Cell. Biol. / Localization of a DNA replication origin and termination zone on chromosome III of Saccharomyces cerevisiae. (1992)
Dates
Type When
Created 18 years, 2 months ago (June 5, 2007, 5:15 p.m.)
Deposited 3 years, 9 months ago (Nov. 14, 2021, 9:10 p.m.)
Indexed 4 months, 2 weeks ago (April 8, 2025, 9:59 p.m.)
Issued 32 years, 2 months ago (June 1, 1993)
Published 32 years, 2 months ago (June 1, 1993)
Published Online 32 years, 2 months ago (June 1, 1993)
Published Print 32 years, 2 months ago (June 1, 1993)
Funders 0

None

@article{Liang_1993, title={Replication initiates at a confined region during DNA amplification in Sciara DNA puff II/9A.}, volume={7}, ISSN={1549-5477}, url={http://dx.doi.org/10.1101/gad.7.6.1072}, DOI={10.1101/gad.7.6.1072}, number={6}, journal={Genes & Development}, publisher={Cold Spring Harbor Laboratory}, author={Liang, C and Spitzer, J D and Smith, H S and Gerbi, S A}, year={1993}, month=jun, pages={1072–1084} }