DOI: 10.1093/nar/gkr427. In vivo functional analysis of the Dicistroviridae intergenic region internal ribosome entry sites

In vivo functional analysis of the Dicistroviridae intergenic region internal ribosome entry sites

10.1093/nar/gkr427

Crossref journal-article

Oxford University Press (OUP)

Nucleic Acids Research (286)

Bibliography

Hertz, M. I., & Thompson, S. R. (2011). In vivo functional analysis of the Dicistroviridae intergenic region internal ribosome entry sites. Nucleic Acids Research, 39(16), 7276â7288.

Authors 2

Marla I. Hertz (first)
Sunnie R. Thompson (additional)

References 58 Referenced 41

10.1038/nrm1488 / Nat. Rev. Mol. Cell Biol. / Molecular mechanisms of translational control by Gebauer (2004)
10.1128/JVI.62.8.2636-2643.1988 / J. Virol. / A segment of the 5′ nontranslated region of encephalomyocarditis virus RNA directs internal entry of ribosomes during in vitro translation by Jang (1988)
10.1038/334320a0 / Nature / Internal initiation of translation of eukaryotic mRNA directed by a sequence derived from poliovirus RNA by Pelletier (1988)
10.1146/annurev-ento-112408-085457 / Ann. Rev. Entomol. / Dicistroviruses by Bonning (2010)
10.1128/MCB.20.14.4990-4999.2000 / Mol. Cell Biol. / Naturally occurring dicistronic cricket paralysis virus RNA is regulated by two internal ribosome entry sites by Wilson (2000)
10.1099/vir.0.18781-0 / J. Gen. Virol. / In vivo activity of Rhopalosiphum padi virus internal ribosome entry sites by Domier (2003)
10.1099/vir.0.82682-0 / J. Gen. Virol. / Identification of minimal sequences of the Rhopalosiphum padi virus 5′ untranslated region required for internal initiation of protein synthesis in mammalian, plant and insect translation systems by Groppelli (2007)
10.1099/vir.0.82193-0 / J. Gen. Virol. / Characterization of the 5′ internal ribosome entry site of Plautia stali intestine virus by Shibuya (2006)
10.1261/rna.1315109 / RNA / Translation initiation factors are not required for Dicistroviridae IRES function in vivo by Deniz (2009)
10.1016/j.virol.2011.01.005 / Virology / Mechanism of translation initiation by Dicistroviridae IGR IRESs by Hertz (2011)
10.1101/gad.1040803 / Genes Dev. / Translation elongation after assembly of ribosomes on the cricket paralysis virus internal ribosomal entry site without initiation factors or initiator tRNA by Pestova (2003)
10.1261/rna.7184705 / RNA / A preformed compact ribosome-binding domain in the cricket paralysis-like virus IRES RNAs by Costantino (2005)
10.1038/nsmb1351 / Nat. Struct. Mol. Biol. / tRNA-mRNA mimicry drives translation initiation from a viral IRES by Costantino (2008)
10.1016/S0022-2836(02)01099-9 / J. Mol. Biol. / Factorless ribosome assembly on the internal ribosome entry site of cricket paralysis virus by Jan (2002)
10.1093/nar/gkg336 / Nucleic Acids Res. / Structural elements in the internal ribosome entry site of Plautia stali intestine virus responsible for binding with ribosomes by Nishiyama (2003)
10.1016/j.jmb.2009.10.047 / J. Mol. Biol. / Mechanistic role of structurally dynamic regions in Dicistroviridae IGR IRESs by Pfingsten (2010)
10.1016/j.jmb.2007.04.076 / J. Mol. Biol. / Conservation and diversity among the three-dimensional folds of the Dicistroviridae intergenic region IRESes by Pfingsten (2007)
10.1038/nsmb1177 / Nat. Struct. Mol. Biol. / Structure of the ribosome-bound cricket paralysis virus IRES RNA by Schuler (2006)
10.1016/j.cell.2004.08.001 / Cell / Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor by Spahn (2004)
10.1016/S0092-8674(00)00055-6 / Cell / Initiation of protein synthesis from the A site of the ribosome by Wilson (2000)
10.1261/rna.2044610 / RNA / Modular domains of the Dicistroviridae intergenic internal ribosome entry site by Jang (2010)
10.1016/j.virusres.2008.06.006 / Virus Res. / Functional analysis of structural motifs in dicistroviruses by Nakashima (2009)
10.1261/rna.5208104 / RNA / Structural variant of the intergenic internal ribosome entry site elements in dicistroviruses and computational search for their counterparts by Hatakeyama (2004)
10.1016/j.jmb.2009.01.042 / J. Mol. Biol. / Conserved element of the dicistrovirus IGR IRES that mimics an E-site tRNA/ribosome interaction mediates multiple functions by Jang (2009)
10.1099/vir.0.2008/003921-0 / J. Gen. Virol. / Examining the relative activity of several dicistrovirus intergenic internal ribosome entry site elements in uninfected insect and mammalian cell lines by Carter (2008)
{'key': 'key\n\t\t\t\t20170510161536_B26', 'first-page': '13.17.11', 'volume-title': 'Current Protocols in Molecular Biology', 'author': 'Becker', 'year': '2000'} / Current Protocols in Molecular Biology by Becker (2000)
10.1126/science.285.5429.901 / Science / Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis by Winzeler (1999)
10.1101/gad.1832209 / Genes Dev. / RPS25 is essential for translation initiation by the Dicistroviridae and hepatitis C viral IRESs by Landry (2009)
10.1016/0378-1119(96)00059-5 / Gene / Construction of a CUP1 promoter-based vector to modulate gene expression in Saccharomyces cerevisiae by Mascorro-Gallardo (1996)
10.1016/j.virol.2006.02.034 / Virology / Genome sequence and molecular characterization of Homalodisca coagulata virus-1, a novel virus discovered in the glassy-winged sharpshooter (Hemiptera: Cicadellidae) by Hunnicutt (2006)
10.1093/jb/mvh167 / J. Biochem. / Cell-free synthesis of polypeptides lacking an amino-terminal methionine by using a dicistroviral intergenic internal ribosome entry site by Shibuya (2004)
10.1093/nar/gki380 / Nucleic Acids Res. / Assembly PCR oligo maker: a tool for designing oligodeoxynucleotides for constructing long DNA molecules for RNA production by Rydzanicz (2005)
10.1016/j.virol.2011.01.005 / Virology / Mechanism of translation initiation by Dicistroviridae IGR IRESs by Hertz (2011)
10.1128/JVI.79.2.677-683.2005 / J. Virol. / Factor-independent assembly of elongation-competent ribosomes by an internal ribosome entry site located in an RNA virus that infects penaeid shrimp by Cevallos (2005)
10.1073/pnas.241286698 / Proc. Natl Acad. Sci. USA / Internal initiation in Saccharomyces cerevisiae mediated by an initiator tRNA/eIF2-independent internal ribosome entry site element by Thompson (2001)
10.1111/j.1751-1097.1998.tb02540.x / Photochem. Photobiol. / The N-terminal amino acid sequences of the firefly luciferase are important for the stability of the enzyme by Sung (1998)
10.1128/JVI.73.2.1219-1226.1999 / J. Virol. / Translation initiation at the CUU codon is mediated by the internal ribosome entry site of an insect picorna-like virus in vitro by Sasaki (1999)
10.1128/JVI.77.22.12002-12010.2003 / J. Virol. / Conditional rather than absolute requirements of the capsid coding sequence for initiation of methionine-independent translation in Plautia stali intestine virus by Shibuya (2003)
10.1093/nar/28.1.292 / Nucleic Acids Res. / Codon usage tabulated from international DNA sequence databases: status for the year 2000 by Nakamura (2000)
10.1093/oxfordjournals.molbev.a026087 / Mol. Biol. Evol. / Selection at the wobble position of codons read by the same tRNA in Saccharomyces cerevisiae by Percudani (1999)
10.1038/nature09206 / Nature / Ribosome dynamics and tRNA movement by time-resolved electron cryomicroscopy by Fischer (2010)
10.1261/rna.2411710 / Rna / Control of translation efficiency in yeast by codon-anticodon interactions by Letzring (2010)
10.1126/science.1096340 / Science / Honey bee nest thermoregulation: diversity promotes stability by Jones (2004)
10.1093/nar/gkl1121 / Nucleic Acids Res. / Eukaryotic ribosomal protein RPS25 interacts with the conserved loop region in a dicistroviral intergenic internal ribosome entry site by Nishiyama (2007)
10.1073/pnas.1010005107 / Proc. Natl Acad. Sci. USA / Localization of eukaryote-specific ribosomal proteins in a 5.5-A cryo-EM map of the 80S eukaryotic ribosome by Armache (2010)
10.1126/science.1194294 / Science / Crystal structure of the eukaryotic ribosome by Ben-Shem (2010)
{'key': 'key\n\t\t\t\t20170510161536_B47', 'first-page': '730', 'article-title': 'Crystal Structure of the Eukaryotic 40S Ribosomal Subunit in Complex with Initiation Factor 1', 'volume': '330', 'author': 'Rabl', 'year': '2010', 'journal-title': 'Science'} / Science / Crystal Structure of the Eukaryotic 40S Ribosomal Subunit in Complex with Initiation Factor 1 by Rabl (2010)
10.1093/nar/gkr114 / Nucleic Acids Res. / Structural basis for the binding of IRES RNAs to the head of the ribosomal 40S subunit by Muhs (2011)
10.1099/0022-1317-83-12-3131 / J. Gen. Virol. / Sequence analysis and genomic organization of Aphid lethal paralysis virus: a new member of the family Dicistroviridae by Van Munster (2002)
10.1099/0022-1317-81-8-2111 / J. Gen. Virol. / Analysis of the complete genome sequence of black queen-cell virus, a picorna-like virus of honey bees by Leat (2000)
10.1099/0022-1317-79-1-191 / J. Gen. Virol. / The novel genome organization of the insect picorna-like virus Drosophila C virus suggests this virus belongs to a previously undescribed virus family by Johnson (1998)
10.1007/s007050050726 / Arch. Virol. / Determining the nucleotide sequence and capsid-coding region of himetobi P virus: a member of a novel group of RNA viruses that infect insects by Nakashima (1999)
10.1006/viro.1998.9094 / Virology / An insect picorna-like virus, Plautia stali intestine virus, has genes of capsid proteins in the 3′ part of the genome by Sasaki (1998)
10.1016/j.virusres.2008.09.001 / Virus Res. / A pathogenic picorna-like virus from the endoparasitoid wasp, Pteromalus puparum: initial discovery and partial genomic characterization by Zhu (2008)
10.1006/viro.1998.9043 / Virology / Nucleotide sequence analysis shows that Rhopalosiphum padi virus is a member of a novel group of insect-infecting RNA viruses by Moon (1998)
10.1099/vir.0.80842-0 / J. Gen. Virol. / Characterization of internal ribosomal entry sites of Triatoma virus by Czibener (2005)
10.1016/j.virol.2004.07.016 / Virology / A picorna-like virus from the red imported fire ant, Solenopsis invicta: initial discovery, genome sequence, and characterization by Valles (2004)
10.1099/0022-1317-83-4-915 / J. Gen. Virol. / Shrimp Taura syndrome virus: genomic characterization and similarity with members of the genus Cricket paralysis-like viruses by Mari (2002)

Dates

Type	When
Created	14 years, 2 months ago (June 7, 2011, 12:11 a.m.)
Deposited	5 years, 2 months ago (June 19, 2020, 6:33 p.m.)
Indexed	2 months ago (July 2, 2025, 2:34 p.m.)
Issued	14 years, 2 months ago (June 6, 2011)
Published	14 years, 2 months ago (June 6, 2011)
Published Online	14 years, 2 months ago (June 6, 2011)
Published Print	14 years ago (Sept. 1, 2011)

Funders 0

None

BibTeX

@article{Hertz_2011, title={In vivo functional analysis of the Dicistroviridae intergenic region internal ribosome entry sites}, volume={39}, ISSN={0305-1048}, url={http://dx.doi.org/10.1093/nar/gkr427}, DOI={10.1093/nar/gkr427}, number={16}, journal={Nucleic Acids Research}, publisher={Oxford University Press (OUP)}, author={Hertz, Marla I. and Thompson, Sunnie R.}, year={2011}, month=jun, pages={7276–7288} }

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      "author": "Bonning",
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      "article-title": "Naturally occurring dicistronic cricket paralysis virus RNA is regulated by two internal ribosome entry sites",
      "volume": "20",
      "author": "Wilson",
      "year": "2000",
      "journal-title": "Mol. Cell Biol."
    },
    {
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      "doi-asserted-by": "crossref",
      "first-page": "415",
      "DOI": "10.1099/vir.0.18781-0",
      "article-title": "In vivo activity of Rhopalosiphum padi virus internal ribosome entry sites",
      "volume": "84",
      "author": "Domier",
      "year": "2003",
      "journal-title": "J. Gen. Virol."
    },
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      "key": "key\n\t\t\t\t20170510161536_B7",
      "doi-asserted-by": "crossref",
      "first-page": "1583",
      "DOI": "10.1099/vir.0.82682-0",
      "article-title": "Identification of minimal sequences of the Rhopalosiphum padi virus 5\u2032 untranslated region required for internal initiation of protein synthesis in mammalian, plant and insect translation systems",
      "volume": "88",
      "author": "Groppelli",
      "year": "2007",
      "journal-title": "J. Gen. Virol."
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B8",
      "doi-asserted-by": "crossref",
      "first-page": "3679",
      "DOI": "10.1099/vir.0.82193-0",
      "article-title": "Characterization of the 5\u2032 internal ribosome entry site of Plautia stali intestine virus",
      "volume": "87",
      "author": "Shibuya",
      "year": "2006",
      "journal-title": "J. Gen. Virol."
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B9",
      "doi-asserted-by": "crossref",
      "first-page": "932",
      "DOI": "10.1261/rna.1315109",
      "article-title": "Translation initiation factors are not required for Dicistroviridae IRES function in vivo",
      "volume": "15",
      "author": "Deniz",
      "year": "2009",
      "journal-title": "RNA"
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B10",
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      "first-page": "355",
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      "volume": "411",
      "author": "Hertz",
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      "DOI": "10.1261/rna.5208104",
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      "author": "Hatakeyama",
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      "doi-asserted-by": "crossref",
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      "volume": "387",
      "author": "Jang",
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      "journal-title": "J. Mol. Biol."
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    {
      "key": "key\n\t\t\t\t20170510161536_B25",
      "doi-asserted-by": "crossref",
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      "volume": "89",
      "author": "Carter",
      "year": "2008",
      "journal-title": "J. Gen. Virol."
    },
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      "key": "key\n\t\t\t\t20170510161536_B26",
      "first-page": "13.17.11",
      "volume-title": "Current Protocols in Molecular Biology",
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      "key": "key\n\t\t\t\t20170510161536_B27",
      "doi-asserted-by": "crossref",
      "first-page": "901",
      "DOI": "10.1126/science.285.5429.901",
      "article-title": "Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis",
      "volume": "285",
      "author": "Winzeler",
      "year": "1999",
      "journal-title": "Science"
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B28",
      "doi-asserted-by": "crossref",
      "first-page": "2753",
      "DOI": "10.1101/gad.1832209",
      "article-title": "RPS25 is essential for translation initiation by the Dicistroviridae and hepatitis C viral IRESs",
      "volume": "23",
      "author": "Landry",
      "year": "2009",
      "journal-title": "Genes Dev."
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B29",
      "doi-asserted-by": "crossref",
      "first-page": "169",
      "DOI": "10.1016/0378-1119(96)00059-5",
      "article-title": "Construction of a CUP1 promoter-based vector to modulate gene expression in Saccharomyces cerevisiae",
      "volume": "172",
      "author": "Mascorro-Gallardo",
      "year": "1996",
      "journal-title": "Gene"
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B30",
      "doi-asserted-by": "crossref",
      "first-page": "67",
      "DOI": "10.1016/j.virol.2006.02.034",
      "article-title": "Genome sequence and molecular characterization of Homalodisca coagulata virus-1, a novel virus discovered in the glassy-winged sharpshooter (Hemiptera: Cicadellidae)",
      "volume": "350",
      "author": "Hunnicutt",
      "year": "2006",
      "journal-title": "Virology"
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B31",
      "doi-asserted-by": "crossref",
      "first-page": "601",
      "DOI": "10.1093/jb/mvh167",
      "article-title": "Cell-free synthesis of polypeptides lacking an amino-terminal methionine by using a dicistroviral intergenic internal ribosome entry site",
      "volume": "136",
      "author": "Shibuya",
      "year": "2004",
      "journal-title": "J. Biochem."
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B32",
      "doi-asserted-by": "crossref",
      "first-page": "W521",
      "DOI": "10.1093/nar/gki380",
      "article-title": "Assembly PCR oligo maker: a tool for designing oligodeoxynucleotides for constructing long DNA molecules for RNA production",
      "volume": "33",
      "author": "Rydzanicz",
      "year": "2005",
      "journal-title": "Nucleic Acids Res."
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B33",
      "doi-asserted-by": "crossref",
      "first-page": "355",
      "DOI": "10.1016/j.virol.2011.01.005",
      "article-title": "Mechanism of translation initiation by Dicistroviridae IGR IRESs",
      "volume": "411",
      "author": "Hertz",
      "year": "2011",
      "journal-title": "Virology"
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B34",
      "doi-asserted-by": "crossref",
      "first-page": "677",
      "DOI": "10.1128/JVI.79.2.677-683.2005",
      "article-title": "Factor-independent assembly of elongation-competent ribosomes by an internal ribosome entry site located in an RNA virus that infects penaeid shrimp",
      "volume": "79",
      "author": "Cevallos",
      "year": "2005",
      "journal-title": "J. Virol."
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B35",
      "doi-asserted-by": "crossref",
      "first-page": "12972",
      "DOI": "10.1073/pnas.241286698",
      "article-title": "Internal initiation in Saccharomyces cerevisiae mediated by an initiator tRNA/eIF2-independent internal ribosome entry site element",
      "volume": "98",
      "author": "Thompson",
      "year": "2001",
      "journal-title": "Proc. Natl Acad. Sci. USA"
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B36",
      "doi-asserted-by": "crossref",
      "first-page": "749",
      "DOI": "10.1111/j.1751-1097.1998.tb02540.x",
      "article-title": "The N-terminal amino acid sequences of the firefly luciferase are important for the stability of the enzyme",
      "volume": "68",
      "author": "Sung",
      "year": "1998",
      "journal-title": "Photochem. Photobiol."
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B37",
      "doi-asserted-by": "crossref",
      "first-page": "1219",
      "DOI": "10.1128/JVI.73.2.1219-1226.1999",
      "article-title": "Translation initiation at the CUU codon is mediated by the internal ribosome entry site of an insect picorna-like virus in vitro",
      "volume": "73",
      "author": "Sasaki",
      "year": "1999",
      "journal-title": "J. Virol."
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B38",
      "doi-asserted-by": "crossref",
      "first-page": "12002",
      "DOI": "10.1128/JVI.77.22.12002-12010.2003",
      "article-title": "Conditional rather than absolute requirements of the capsid coding sequence for initiation of methionine-independent translation in Plautia stali intestine virus",
      "volume": "77",
      "author": "Shibuya",
      "year": "2003",
      "journal-title": "J. Virol."
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B39",
      "doi-asserted-by": "crossref",
      "first-page": "292",
      "DOI": "10.1093/nar/28.1.292",
      "article-title": "Codon usage tabulated from international DNA sequence databases: status for the year 2000",
      "volume": "28",
      "author": "Nakamura",
      "year": "2000",
      "journal-title": "Nucleic Acids Res."
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B40",
      "doi-asserted-by": "crossref",
      "first-page": "1752",
      "DOI": "10.1093/oxfordjournals.molbev.a026087",
      "article-title": "Selection at the wobble position of codons read by the same tRNA in Saccharomyces cerevisiae",
      "volume": "16",
      "author": "Percudani",
      "year": "1999",
      "journal-title": "Mol. Biol. Evol."
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B41",
      "doi-asserted-by": "crossref",
      "first-page": "329",
      "DOI": "10.1038/nature09206",
      "article-title": "Ribosome dynamics and tRNA movement by time-resolved electron cryomicroscopy",
      "volume": "466",
      "author": "Fischer",
      "year": "2010",
      "journal-title": "Nature"
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B42",
      "doi-asserted-by": "crossref",
      "first-page": "2516",
      "DOI": "10.1261/rna.2411710",
      "article-title": "Control of translation efficiency in yeast by codon-anticodon interactions",
      "volume": "16",
      "author": "Letzring",
      "year": "2010",
      "journal-title": "Rna"
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B43",
      "doi-asserted-by": "crossref",
      "first-page": "402",
      "DOI": "10.1126/science.1096340",
      "article-title": "Honey bee nest thermoregulation: diversity promotes stability",
      "volume": "305",
      "author": "Jones",
      "year": "2004",
      "journal-title": "Science"
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B44",
      "doi-asserted-by": "crossref",
      "first-page": "1514",
      "DOI": "10.1093/nar/gkl1121",
      "article-title": "Eukaryotic ribosomal protein RPS25 interacts with the conserved loop region in a dicistroviral intergenic internal ribosome entry site",
      "volume": "35",
      "author": "Nishiyama",
      "year": "2007",
      "journal-title": "Nucleic Acids Res."
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B45",
      "doi-asserted-by": "crossref",
      "first-page": "19754",
      "DOI": "10.1073/pnas.1010005107",
      "article-title": "Localization of eukaryote-specific ribosomal proteins in a 5.5-A cryo-EM map of the 80S eukaryotic ribosome",
      "volume": "107",
      "author": "Armache",
      "year": "2010",
      "journal-title": "Proc. Natl Acad. Sci. USA"
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B46",
      "doi-asserted-by": "crossref",
      "first-page": "1203",
      "DOI": "10.1126/science.1194294",
      "article-title": "Crystal structure of the eukaryotic ribosome",
      "volume": "330",
      "author": "Ben-Shem",
      "year": "2010",
      "journal-title": "Science"
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B47",
      "first-page": "730",
      "article-title": "Crystal Structure of the Eukaryotic 40S Ribosomal Subunit in Complex with Initiation Factor 1",
      "volume": "330",
      "author": "Rabl",
      "year": "2010",
      "journal-title": "Science"
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B48",
      "doi-asserted-by": "crossref",
      "DOI": "10.1093/nar/gkr114",
      "article-title": "Structural basis for the binding of IRES RNAs to the head of the ribosomal 40S subunit",
      "author": "Muhs",
      "year": "2011",
      "journal-title": "Nucleic Acids Res."
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B49",
      "doi-asserted-by": "crossref",
      "first-page": "3131",
      "DOI": "10.1099/0022-1317-83-12-3131",
      "article-title": "Sequence analysis and genomic organization of Aphid lethal paralysis virus: a new member of the family Dicistroviridae",
      "volume": "83",
      "author": "Van Munster",
      "year": "2002",
      "journal-title": "J. Gen. Virol."
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B50",
      "doi-asserted-by": "crossref",
      "first-page": "2111",
      "DOI": "10.1099/0022-1317-81-8-2111",
      "article-title": "Analysis of the complete genome sequence of black queen-cell virus, a picorna-like virus of honey bees",
      "volume": "81",
      "author": "Leat",
      "year": "2000",
      "journal-title": "J. Gen. Virol."
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B51",
      "doi-asserted-by": "crossref",
      "first-page": "191",
      "DOI": "10.1099/0022-1317-79-1-191",
      "article-title": "The novel genome organization of the insect picorna-like virus Drosophila C virus suggests this virus belongs to a previously undescribed virus family",
      "volume": "79",
      "author": "Johnson",
      "year": "1998",
      "journal-title": "J. Gen. Virol."
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B52",
      "doi-asserted-by": "crossref",
      "first-page": "2051",
      "DOI": "10.1007/s007050050726",
      "article-title": "Determining the nucleotide sequence and capsid-coding region of himetobi P virus: a member of a novel group of RNA viruses that infect insects",
      "volume": "144",
      "author": "Nakashima",
      "year": "1999",
      "journal-title": "Arch. Virol."
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B53",
      "doi-asserted-by": "crossref",
      "first-page": "50",
      "DOI": "10.1006/viro.1998.9094",
      "article-title": "An insect picorna-like virus, Plautia stali intestine virus, has genes of capsid proteins in the 3\u2032 part of the genome",
      "volume": "244",
      "author": "Sasaki",
      "year": "1998",
      "journal-title": "Virology"
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B54",
      "doi-asserted-by": "crossref",
      "first-page": "144",
      "DOI": "10.1016/j.virusres.2008.09.001",
      "article-title": "A pathogenic picorna-like virus from the endoparasitoid wasp, Pteromalus puparum: initial discovery and partial genomic characterization",
      "volume": "138",
      "author": "Zhu",
      "year": "2008",
      "journal-title": "Virus Res."
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B55",
      "doi-asserted-by": "crossref",
      "first-page": "54",
      "DOI": "10.1006/viro.1998.9043",
      "article-title": "Nucleotide sequence analysis shows that Rhopalosiphum padi virus is a member of a novel group of insect-infecting RNA viruses",
      "volume": "243",
      "author": "Moon",
      "year": "1998",
      "journal-title": "Virology"
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B56",
      "doi-asserted-by": "crossref",
      "first-page": "2275",
      "DOI": "10.1099/vir.0.80842-0",
      "article-title": "Characterization of internal ribosomal entry sites of Triatoma virus",
      "volume": "86",
      "author": "Czibener",
      "year": "2005",
      "journal-title": "J. Gen. Virol."
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B57",
      "doi-asserted-by": "crossref",
      "first-page": "151",
      "DOI": "10.1016/j.virol.2004.07.016",
      "article-title": "A picorna-like virus from the red imported fire ant, Solenopsis invicta: initial discovery, genome sequence, and characterization",
      "volume": "328",
      "author": "Valles",
      "year": "2004",
      "journal-title": "Virology"
    },
    {
      "key": "key\n\t\t\t\t20170510161536_B58",
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      "first-page": "915",
      "DOI": "10.1099/0022-1317-83-4-915",
      "article-title": "Shrimp Taura syndrome virus: genomic characterization and similarity with members of the genus Cricket paralysis-like viruses",
      "volume": "83",
      "author": "Mari",
      "year": "2002",
      "journal-title": "J. Gen. Virol."
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