DOI: 10.1093/nar/gkp940. The MiST2 database: a comprehensive genomics resource on microbial signal transduction

The MiST2 database: a comprehensive genomics resource on microbial signal transduction

10.1093/nar/gkp940

Crossref journal-article

Oxford University Press (OUP)

Nucleic Acids Research (286)

Bibliography

Ulrich, L. E., & Zhulin, I. B. (2009). The MiST2 database: a comprehensive genomics resource on microbial signal transduction. Nucleic Acids Research, 38(suppl_1), D401âD407.

Authors 2

Luke E. Ulrich (first)
Igor B. Zhulin (additional)

References 32 Referenced 220

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10.1016/j.tim.2004.12.006 / Trends Microbiol. / One-component systems dominate signal transduction in prokaryotes by Ulrich (2005)
10.1038/nrmicro2109 / Nat. Rev. Microbiol / Principles of c-di-GMP signalling in bacteria by Hengge (2009)
10.1038/nrm1524 / Nat. Rev. Mol. Cell Biol / Making sense of it all: bacterial chemotaxis by Wadhams (2004)
10.1007/978-3-540-74921-9_8 / Bacterial Physiology / Environmental sensing and the role of extracytoplasmic function sigma factors by Butcher (2008)
10.1016/S0065-2911(02)46002-X / Adv. Microb. Physiol. / The extracytoplasmic function (ECF) sigma factors by Helmann (2002)
10.1111/j.1365-2958.2009.06870.x / Mol. Microbiol. / The third pillar of bacterial signal transduction: classification of the extracytoplasmic function (ECF) sigma factor protein family by Staroń (2009)
10.1186/1471-2105-4-41 / BMC Bioinformatics / The COG database: an updated version includes eukaryotes by Tatusov (2003)
10.1093/nar/gkl932 / Nucleic Acids Res. / MiST: a microbial signal transduction database by Ulrich (2006)
10.1073/pnas.0606924103 / Proc. Natl Acad. Sci. USA / Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility by Chain (2006)
10.1128/AEM.02580-06 / Appl. Environ. Microbiol. / Ecological genomics of marine Roseobacters by Moran (2007)
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10.1371/journal.pgen.1000087 / PLoS Genet. / Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40 T by Weiner (2008)
10.1186/1471-2164-10-145 / BMC Genomics / The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota by Anderson (2009)
10.1371/journal.pone.0005797 / PLoS ONE / Genomic characterization of methanomicrobiales reveals three classes of methanogens by Anderson (2009)
10.1093/nar/gkp642 / Nucleic Acids Res / Analysis of complete genome sequence of Neorickettsia risticii: causative agent of Potomac horse fever by Lin (2009)
10.1146/annurev.bi.57.070188.004203 / Annu. Rev. Biochem. / Structure and function of bacterial sigma factors by Helmann (1988)
10.1093/nar/gkm960 / Nucleic Acids Res. / The Pfam protein families database by Finn (2008)
10.1093/bioinformatics/14.9.755 / Bioinformatics / Profile hidden Markov models by Eddy (1998)
{'key': 'key\n\t\t\t\t20170510132511_B21', 'first-page': '303', 'article-title': 'A specialized version of the HD hydrolase domain implicated in signal transduction', 'volume': '1', 'author': 'Galperin', 'year': '1999', 'journal-title': 'J. Mol. Microbiol. Biotechnol.'} / J. Mol. Microbiol. Biotechnol. / A specialized version of the HD hydrolase domain implicated in signal transduction by Galperin (1999)
{'key': 'key\n\t\t\t\t20170510132511_B22', 'first-page': '1', 'article-title': 'Comparative genomic and protein sequence analyses of a complex system controlling bacterial chemotaxis', 'volume': '422', 'author': 'Wuichet', 'year': '2007', 'journal-title': 'Meth. Enzymol.'} / Meth. Enzymol. / Comparative genomic and protein sequence analyses of a complex system controlling bacterial chemotaxis by Wuichet (2007)
10.1002/047001153X.g402306 / Encyclopedia of Genetics, Genomics, Proteomics, and Bioinformatics / Operon finding in bacteria by Ermolaeva (2005)
10.1093/nar/gkl1018 / Nucleic Acids Res. / Operon prediction using both genome-specific and general genomic information by Dam (2006)
10.1093/nar/gkn784 / Nucleic Acids Res. / OperonDB: a comprehensive database of predicted operons in microbial genomes by Pertea (2008)
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10.1007/s12033-008-9127-7 / Mol. Biotechnol. / Data deposition and annotation at the worldwide protein data bank by Dutta (2009)
10.1093/nar/gkn664 / Nucleic Acids Res. / The Universal Protein Resource (UniProt) 2009 by The UniProt Consortium (2009)
10.1093/oxfordjournals.molbev.a026297 / Mol. Biol. Evol. / Evolution of two-component signal transduction by Koretke (2000)
10.1093/nar/25.17.3389 / Nucleic Acids Res. / Gapped BLAST and PSI-BLAST: a new generation of protein database search programs by Altschul (1997)
10.1093/bioinformatics/btm098 / Bioinformatics / UniRef: comprehensive and non-redundant UniProt reference clusters by Suzek (2007)
{'key': 'key\n\t\t\t\t20170510132511_B32', 'first-page': '1', 'article-title': 'A cluster algorithm for graphs', 'volume': '1', 'author': 'van Dongen', 'year': '2000', 'journal-title': 'Inf. Syst.'} / Inf. Syst. / A cluster algorithm for graphs by van Dongen (2000)

Dates

Type	When
Created	15 years, 9 months ago (Nov. 9, 2009, 8:25 p.m.)
Deposited	7 years, 4 months ago (April 2, 2018, 10:41 a.m.)
Indexed	4 weeks, 2 days ago (Aug. 2, 2025, 1:02 a.m.)
Issued	15 years, 9 months ago (Nov. 7, 2009)
Published	15 years, 9 months ago (Nov. 7, 2009)
Published Online	15 years, 9 months ago (Nov. 7, 2009)
Published Print	15 years, 8 months ago (Jan. 1, 2010)

Funders 0

None

BibTeX

@article{Ulrich_2009, title={The MiST2 database: a comprehensive genomics resource on microbial signal transduction}, volume={38}, ISSN={1362-4962}, url={http://dx.doi.org/10.1093/nar/gkp940}, DOI={10.1093/nar/gkp940}, number={suppl_1}, journal={Nucleic Acids Research}, publisher={Oxford University Press (OUP)}, author={Ulrich, Luke E. and Zhulin, Igor B.}, year={2009}, month=nov, pages={D401–D407} }

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