DOI: 10.1093/nar/gkp937. STITCH 2: an interaction network database for small molecules and proteins

STITCH 2: an interaction network database for small molecules and proteins

10.1093/nar/gkp937

Crossref journal-article

Oxford University Press (OUP)

Nucleic Acids Research (286)

Bibliography

Kuhn, M., Szklarczyk, D., Franceschini, A., Campillos, M., von Mering, C., Jensen, L. J., Beyer, A., & Bork, P. (2009). STITCH 2: an interaction network database for small molecules and proteins. Nucleic Acids Research, 38(suppl_1), D552âD556.

Authors 8

Michael Kuhn (first)
Damian Szklarczyk (additional)
Andrea Franceschini (additional)
Monica Campillos (additional)
Christian von Mering (additional)
Lars Juhl Jensen (additional)
Andreas Beyer (additional)
Peer Bork (additional)

References 25 Referenced 208

10.1093/bioinformatics/btp380 / Bioinformatics / A survey of across-target bioactivity results of small molecules in PubChem by Han (2009)
10.1016/j.febslet.2009.03.001 / FEBS lett. / A network medicine approach to human disease by Zanzoni (2009)
10.1038/nchembio1108-635 / Nature Chem. Biol. / Chemical biology and the limits of reductionism by Peterson (2008)
10.1002/cbic.200800454 / Chembiochem: Eur. J. Chem. Biol. / Chemical biology approaches to probe the proteome by Ovaa (2008)
10.1038/nchembio.216 / Nature Chem. Biol. / Target profiling of small molecules by chemical proteomics by Rix (2009)
10.1038/nchembio0709-436 / Nature Chem. Biol. / Open access chemical and clinical probes to support drug discovery by Edwards (2009)
10.1093/nar/gkm795 / Nucleic Acids Res. / STITCH: interaction networks of chemicals and proteins by Kuhn (2008)
10.1021/pr8010843 / J. Proteome Res. / Fishing the target of antitubercular compounds: in silico target deconvolution model development and validation by Prathipati (2009)
10.1177/107385840000600408 / Neuroscientist / The multiplicity of serotonin receptors: uselessly diverse molecules or an embarrassment of riches? by Roth (2000)
10.1093/nar/28.1.235 / Nucleic Acids Res. / The Protein Data Bank by Berman (2000)
10.1093/nar/gkj102 / Nucleic Acids Res. / From genomics to chemical genomics: new developments in KEGG by Kanehisa (2006)
10.1093/nar/gki072 / Nucleic Acids Res. / Reactome: a knowledgebase of biological pathways by Joshi-Tope (2005)
10.1093/nar/gkj067 / Nucleic Acids Res. / DrugBank: a comprehensive resource for in silico drug discovery and exploration by Wishart (2006)
{'key': 'key\n\t\t\t\t20170408060237_B14', 'first-page': 'D919', 'article-title': 'SuperTarget and Matador: Resources for exploring drug-target relationships', 'volume-title': 'Nucleic Acids Res.', 'author': 'Günther', 'year': '2008'} / Nucleic Acids Res. / SuperTarget and Matador: Resources for exploring drug-target relationships by Günther (2008)
10.1093/nar/gkj028 / Nucleic Acids Res. / GLIDA: GPCR-ligand database for chemical genomic drug discovery by Okuno (2006)
10.1002/0471250953.bi1407s23 / Curr. Protoc. Bioinformatics / PharmGKB: an integrated resource of pharmacogenomic data and knowledge by Gong (2008)
10.1093/nar/30.1.163 / Nucleic Acids Res. / PharmGKB: the Pharmacogenetics Knowledge Base by Hewett (2002)
10.1093/nar/gkn580 / Nucleic Acids Res. / Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease networks by Davis (2009)
10.1093/nar/gkl999 / Nucleic Acids Res. / BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities by Liu (2007)
10.1093/nar/gkn760 / Nucleic Acids Res. / STRING 8—a global view on proteins and their functional interactions in 630 organisms by Jensen (2009)
10.1038/nrd2132 / Nature Rev. Drug Disc. / Drugs, their targets and the nature and number of drug targets by Imming (2006)
10.1093/nar/gkl1031 / Nucleic Acids Res. / Database resources of the National Center for Biotechnology Information by Wheeler (2007)
10.2174/138161206777585274 / Curr. Pharm. Des. / Recent developments of the chemistry development kit (CDK)—an open-source java library for chemo- and bioinformatics by Steinbeck (2006)
10.1093/nar/gkl1031 / Nucleic Acids Res. / Database resources of the National Center for Biotechnology Information by Wheeler (2007)
10.1016/j.jbi.2006.02.013 / J. Biomed. Inform. / NCI Thesaurus: a semantic model integrating cancer-related clinical and molecular information by Sioutos (2007)

Dates

Type	When
Created	15 years, 9 months ago (Nov. 6, 2009, 4:18 p.m.)
Deposited	6 years, 2 months ago (May 23, 2019, 10:11 a.m.)
Indexed	4 weeks, 1 day ago (July 23, 2025, 8:05 a.m.)
Issued	15 years, 9 months ago (Nov. 6, 2009)
Published	15 years, 9 months ago (Nov. 6, 2009)
Published Online	15 years, 9 months ago (Nov. 6, 2009)
Published Print	15 years, 7 months ago (Jan. 1, 2010)

Funders 0

None

BibTeX

@article{Kuhn_2009, title={STITCH 2: an interaction network database for small molecules and proteins}, volume={38}, ISSN={1362-4962}, url={http://dx.doi.org/10.1093/nar/gkp937}, DOI={10.1093/nar/gkp937}, number={suppl_1}, journal={Nucleic Acids Research}, publisher={Oxford University Press (OUP)}, author={Kuhn, Michael and Szklarczyk, Damian and Franceschini, Andrea and Campillos, Monica and von Mering, Christian and Jensen, Lars Juhl and Beyer, Andreas and Bork, Peer}, year={2009}, month=nov, pages={D552–D556} }

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