DOI: 10.1093/nar/gkn654. PPDB, the Plant Proteomics Database at Cornell

PPDB, the Plant Proteomics Database at Cornell

10.1093/nar/gkn654

Crossref journal-article

Oxford University Press (OUP)

Nucleic Acids Research (286)

Bibliography

Sun, Q., Zybailov, B., Majeran, W., Friso, G., Olinares, P. D. B., & van Wijk, K. J. (2008). PPDB, the Plant Proteomics Database at Cornell. Nucleic Acids Research, 37(suppl_1), D969âD974.

Authors 6

Qi Sun (first)
Boris Zybailov (additional)
Wojciech Majeran (additional)
Giulia Friso (additional)
Paul Dominic B. Olinares (additional)
Klaas J. van Wijk (additional)

References 22 Referenced 322

10.1002/pmic.200600260 / Proteomics / Plant proteome analysis: a 2004–2006 update by Rossignol (2006)
10.1002/pmic.200700135 / Proteomics / Plant proteome analysis: a 2006 update by Jorrin (2007)
10.1105/tpc.017814 / Plant Cell / In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database by Friso (2004)
10.1186/1471-2105-8-216 / BMC Bioinformatics / ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites by Hummel (2007)
10.1104/pp.105.065532 / Plant Physiol. / Combining experimental and predicted datasets for determination of the subcellular location of proteins in Arabidopsis by Heazlewood (2005)
10.1104/pp.104.043695 / Plant Physiol. / AraPerox. A database of putative Arabidopsis proteins from plant peroxisomes by Reumann (2004)
10.1093/nar/gkm812 / Nucleic Acids Res. / PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor by Heazlewood (2008)
10.1021/pr025556v / J. Proteome Res. / Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome by Peng (2003)
10.1371/journal.pone.0001994 / PLoS ONE / Sorting signals, N-terminal modifications and abundance of the chloroplast proteome by Zybailov (2008)
10.1104/pp.108.124545 / Plant Physiol. / Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis thaliana by Rutschow (2008)
10.1074/mcp.M800016-MCP200 / Mol. Cell. Proteomics. / Consequences of C4 differentiation for chloroplast membrane proteomes in maize mesophyll and bundle sheath cells by Majeran (2008)
10.1111/j.1365-313X.2004.02016.x / Plant J. / MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes by Thimm (2004)
10.1104/pp.104.040717 / Plant Physiol. / Analysis of curated and predicted plastid subproteomes of Arabidopsis. Subcellular compartmentalization leads to distinctive proteome properties by Sun (2004)
10.1021/ac0498563 / Anal. Chem. / A model for random sampling and estimation of relative protein abundance in shotgun proteomics by Liu (2004)
10.1021/ac050846r / Anal. Chem. / Correlation of relative abundance ratios derived from peptide ion chromatograms and spectrum counting for quantitative proteomic analysis using stable isotope labeling by Zybailov (2005)
10.1074/mcp.M500084-MCP200 / Mol. Cell. Proteomics / Comparison of label-free methods for quantifying human proteins by shotgun proteomics by Old (2005)
10.1038/nbt1270 / Nat. Biotechnol. / Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation by Lu (2007)
10.1074/mcp.R500005-MCP200 / Mol. Cell. Proteomics / Statistical and computational methods for comparative proteomic profiling using liquid chromatography-tandem mass spectrometry by Listgarten (2005)
10.1038/nmeth1088 / Nat. Methods / Analysis and validation of proteomic data generated by tandem mass spectrometry by Nesvizhskii (2007)
10.1007/s00216-007-1486-6 / Anal. Bioanal. Chem. / Quantitative mass spectrometry in proteomics: a critical review by Bantscheff (2007)
10.1105/tpc.105.035519 / Plant Cell / Functional differentiation of bundle sheath and mesophyll maize chloroplasts determined by comparative proteomics by Majeran (2005)
10.1104/pp.106.080150 / Plant Physiol. / High light response of the Thylakoid proteome in Arabidopsis wild type and the ascorbate-deficient mutant vtc2–2. A comparative proteomics study by Giacomelli (2006)

Dates

Type	When
Created	16 years, 10 months ago (Oct. 2, 2008, 8:13 p.m.)
Deposited	7 years, 4 months ago (April 2, 2018, 10:40 a.m.)
Indexed	3 weeks, 3 days ago (Aug. 2, 2025, 1:08 a.m.)
Issued	16 years, 10 months ago (Oct. 2, 2008)
Published	16 years, 10 months ago (Oct. 2, 2008)
Published Online	16 years, 10 months ago (Oct. 2, 2008)
Published Print	16 years, 7 months ago (Jan. 1, 2009)

Funders 0

None

BibTeX

@article{Sun_2008, title={PPDB, the Plant Proteomics Database at Cornell}, volume={37}, ISSN={0305-1048}, url={http://dx.doi.org/10.1093/nar/gkn654}, DOI={10.1093/nar/gkn654}, number={suppl_1}, journal={Nucleic Acids Research}, publisher={Oxford University Press (OUP)}, author={Sun, Qi and Zybailov, Boris and Majeran, Wojciech and Friso, Giulia and Olinares, Paul Dominic B. and van Wijk, Klaas J.}, year={2008}, month=oct, pages={D969–D974} }

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