Crossref journal-article
Oxford University Press (OUP)
Nucleic Acids Research (286)
Bibliography

Flanagin, S., Nelson, J. D., Castner, D. G., Denisenko, O., & Bomsztyk, K. (2008). Microplate-based chromatin immunoprecipitation method, Matrix ChIP: a platform to study signaling of complex genomic events. Nucleic Acids Research, 36(3), e17.

Authors 5
  1. Steve Flanagin (first)
  2. Joel D. Nelson (additional)
  3. David G. Castner (additional)
  4. Oleg Denisenko (additional)
  5. Karol Bomsztyk (additional)
References 70 Referenced 75
  1. 10.1038/nature01411 / Nature / Controlling the double helix by Felsenfeld (2003)
  2. 10.1016/j.ceb.2004.04.004 / Curr. Opin. Cell Biol / Recent highlights of RNA-polymerase-II-mediated transcription by Sims (2004)
  3. 10.1016/j.molcel.2005.05.008 / Mol. Cell / Chromatin in need of a fix: phosphorylation of H2AX connects chromatin to DNA repair by Thiriet (2005)
  4. 10.1006/meth.1999.0879 / Methods / In vivo cross-linking and immunoprecipitation for studying dynamic Protein:DNA associations in a chromatin environment by Kuo (1999)
  5. {'key': 'key\n\t\t\t\t20170720161015_B5', 'first-page': '1041', 'article-title': 'Defining the CREB regulon: a genome-wide analysis of transcription factor regulatory regions', 'volume': '119', 'author': 'Impey', 'year': '2004', 'journal-title': 'Cell'} / Cell / Defining the CREB regulon: a genome-wide analysis of transcription factor regulatory regions by Impey (2004)
  6. 10.1126/science.1076164 / Science / A kinetic framework for a mammalian RNA polymerase in vivo by Dundr (2002)
  7. 10.1126/science.1078572 / Science / Maintenance of stable heterochromatin domains by dynamic HP1 binding by Cheutin (2003)
  8. 10.1146/annurev.biochem.72.121801.161724 / Annu. Rev. Biochem / The dynamics of chromosome organization and gene regulation by Spector (2003)
  9. 10.1016/j.cell.2007.06.040 / Cell / RNA polymerase II: just stopping by by Lorincz (2007)
  10. 10.1038/nature04048 / Nature / Reversing histone methylation by Bannister (2005)
  11. 10.1126/science.1085703 / Science / FACT facilitates transcription-dependent nucleosome alteration by Belotserkovskaya (2003)
  12. 10.1101/gad.1324305 / Genes Dev / RNA meets chromatin by Bernstein (2005)
  13. 10.1126/science.1078694 / Science / Modulation of heterochromatin protein 1 dynamics in primary Mammalian cells by Festenstein (2003)
  14. 10.1101/gr.5704207 / Genome Res / The landscape of histone modifications across 1% of the human genome in five human cell lines by Koch (2007)
  15. 10.1016/j.cell.2007.02.005 / Cell / Chromatin modifications and their function by Kouzarides (2007)
  16. 10.1016/j.cell.2007.01.029 / Cell / The epigenomics of cancer by Jones (2007)
  17. 10.1016/j.cell.2007.05.042 / Cell / A chromatin landmark and transcription initiation at most promoters in human cells by Guenther (2007)
  18. 10.1016/j.cell.2007.01.033 / Cell / The mammalian epigenome by Bernstein (2007)
  19. 10.1038/nature05915 / Nature / The complex language of chromatin regulation during transcription by Berger (2007)
  20. 10.1093/nar/gnj004 / Nucleic Acids Res / Fast chromatin immunoprecipitation assay by Nelson (2006)
  21. 10.1091/mbc.E06-09-0867 / Mol. Biol. Cell / Identification of a new hybrid serum response factor and myocyte enhancer factor 2-binding element in MyoD enhancer required for MyoD expression during myogenesis by L'Honore (2007)
  22. 10.1101/gad.436707 / Genes Dev / Recruitment of factors linking transcription and processing of pre-rRNA to NOR chromatin is UBF-dependent and occurs independent of transcription in human cells by Prieto (2007)
  23. 10.1101/gad.1563807 / Genes Dev / Histone deacetylases 1 and 2 redundantly regulate cardiac morphogenesis, growth, and contractility by Montgomery (2007)
  24. 10.1096/fasebj.9.9.7601337 / Faseb J / The MAPK signaling cascade by Seger (1995)
  25. 10.1046/j.1432-1327.1999.00120.x / Eur. J. Biochem / Protein kinase Cd by Gschwendt (1999)
  26. 10.1016/S1357-2725(98)00089-2 / Int. J. Biochem. Cell Biol / Fyn, a Src family tyrosine kinase by Resh (1998)
  27. 10.1093/nar/gkg452 / Nucleic Acids Res / Transient recruitment of the hnRNP K protein to inducibly transcribed gene loci by Ostrowski (2003)
  28. 10.1016/j.cell.2006.11.015 / Cell / Proteins kinases: chromatin-associated enzymes? by Chow (2006)
  29. 10.1016/j.molcel.2006.10.011 / Mol. Cell / Induction of progesterone target genes requires activation of Erk and Msk kinases and phosphorylation of histone H3 by Vicent (2006)
  30. 10.1038/ng1378 / Nat. Genet / p38 pathway targets SWI-SNF chromatin-remodeling complex to muscle-specific loci by Simone (2004)
  31. 10.1126/science.1131158 / Science / Cell signaling. Protein kinases seek close encounters with active genes by Edmunds (2006)
  32. 10.1126/science.1127677 / Science / Activated signal transduction kinases frequently occupy target genes by Pokholok (2006)
  33. 10.1074/jbc.271.31.18981 / J. Biol. Chem / Activation of a nuclear DNA-binding protein recognized by a transcriptional element, bcn-1, from the laminin B2 chain gene promoter by Suzuki (1996)
  34. 10.1038/nprot.2006.27 / Nat. Protoc / Protocol for the fast chromatin immunoprecipitation (ChIP) method by Nelson (2006)
  35. 10.1093/clinchem/30.9.1446 / Clin. Chem / Ultrasound-accelerated immunoassay, as exemplified by enzyme immunoassay of choriogonadotropin by Chen (1984)
  36. 10.2144/99274rr01 / Biotechniques / High-throughput microarray-based enzyme-linked immunosorbent assay (ELISA) by Mendoza (1999)
  37. 10.1016/j.ab.2004.02.003 / Anal. Biochem / Coated microwell plate-based affinity purification of antigens by Desai (2004)
  38. 10.1016/S0003-2697(02)00442-6 / Anal. Biochem / Optimizing antibody immobilization strategies for the construction of protein microarrays by Peluso (2003)
  39. 10.1016/j.colsurfb.2006.09.010 / Colloids Surf B Biointerfaces / Immobilization of Protein A on SAMs for the elaboration of immunosensors by Briand (2006)
  40. 10.1021/la0600550 / Langmuir / High-capacity binding of proteins by poly(acrylic acid) brushes and their derivatives by Dai (2006)
  41. 10.1021/la061881b / Langmuir / Structure and protein binding capacity of a planar PAA brush by Hollmann (2007)
  42. 10.1016/j.ab.2005.12.034 / Anal. Biochem / Fabrication of an antibody microwell array with self-adhering antibody binding protein by Tanaka (2006)
  43. 10.1002/bit.10760 / Biotechnol. Bioeng / Comparison of antibody functionality using different immobilization methods by Danczyk (2003)
  44. 10.1016/S0956-5663(96)00074-7 / Biosens. Bioelectron / Effectiveness of protein A for antibody immobilization for a fiber optic biosensor by Anderson (1997)
  45. 10.1038/nsmb0207-103 / Nat. Struct. Mol. Biol / Transcriptional noise and the fidelity of initiation by RNA polymerase II by Struhl (2007)
  46. 10.1002/bies.20048 / Bioessays / hnRNP K: one protein multiple processes by Bomsztyk (2004)
  47. 10.1038/35065000 / Nature / Mammalian MAP kinase signalling cascades by Chang (2001)
  48. 10.1128/EC.4.1.36-45.2005 / Eukaryot. Cell / Molecular analysis reveals localization of Saccharomyces cerevisiae protein kinase C to sites of polarized growth and Pkc1p targeting to the nucleus and mitotic spindle by Denis (2005)
  49. 10.1016/S0960-9822(99)80401-1 / Curr. Biol / SHPS-1 is a scaffold for assembling distinct adhesion-regulated multi-protein complexes in macrophages by Timms (1999)
  50. 10.1016/j.tibs.2006.03.009 / Trends Biochem. Sci / MAPK signal specificity: the right place at the right time by Murphy (2006)
  51. 10.1002/1097-0185(20001001)260:2<115::AID-AR10>3.0.CO;2-C / Anat. Rec / Transient nuclear localization of Fyn kinase during development in zebrafish by Rongish (2000)
  52. 10.1038/nrm1527 / Nat. Rev. Mol. Cell Biol / AKAP signalling complexes: focal points in space and time by Wong (2004)
  53. 10.1038/ng1966 / Nat. Genet / Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome by Heintzman (2007)
  54. 10.1016/j.cell.2007.05.009 / Cell / High-resolution profiling of histone methylations in the human genome by Barski (2007)
  55. 10.1016/j.molcel.2005.06.011 / Mol. Cell / Histone H3 lysine 9 methylation and HP1gamma are associated with transcription elongation through mammalian chromatin by Vakoc (2005)
  56. 10.1074/jbc.275.5.3619 / J. Biol. Chem / Role of tyrosine phosphorylation in the regulation of the interaction of heterogenous nuclear ribonucleoprotein K protein with its protein and RNA partners by Ostrowski (2000)
  57. 10.1128/MCB.02014-06 / Mol. Cell Biol / Deciphering the crosstalk between hnRNP K and c-Src: the c-Src activation domain in hnRNP K is distinct from a second interaction site by Adolph (2006)
  58. 10.1038/nrg2008 / Nat. Rev. Genet / Heterochromatin revisited by Grewal (2007)
  59. 10.1016/j.molcel.2006.06.017 / Mol. Cell / Enhanced histone acetylation and transcription: a dynamic perspective by Clayton (2006)
  60. 10.1128/MCB.25.11.4650-4661.2005 / Mol. Cell Biol / Mapping global histone methylation patterns in the coding regions of human genes by Miao (2005)
  61. 10.1016/j.molcel.2005.05.009 / Mol. Cell / Dynamic lysine methylation on histone H3 defines the regulatory phase of gene transcription by Morillon (2005)
  62. 10.1038/nature01080 / Nature / Active genes are tri-methylated at K4 of histone H3 by Santos-Rosa (2002)
  63. 10.1128/MCB.24.23.10111-10117.2004 / Mol. Cell Biol / Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II by Schwabish (2004)
  64. 10.1016/j.bbaexp.2003.11.013 / Biochim. Biophys. Acta / Transcriptional elongation control by RNA polymerase II: a new frontier by Shilatifard (2004)
  65. 10.1126/science.1076997 / Science / Role of histone H3 lysine 27 methylation in Polycomb-group silencing by Cao (2002)
  66. 10.1126/science.1084274 / Science / Role of histone H3 lysine 27 methylation in X inactivation by Plath (2003)
  67. 10.1182/blood-2002-02-0415 / Blood / The proximal serum response element in the Egr-1 promoter mediates response to thrombin in primary human endothelial cells by Wu (2002)
  68. 10.1186/1471-2199-5-13 / BMC Mol. Biol / Expression profiling of serum inducible genes identifies a subset of SRF target genes that are MKL dependent by Selvaraj (2004)
  69. 10.1101/gr.5875007 / Genome Res / Serum response factor binding sites differ in three human cell types by Cooper (2007)
  70. 10.1016/j.cell.2007.01.015 / Cell / The role of chromatin during transcription by Li (2007)
Dates
Type When
Created 17 years, 7 months ago (Jan. 18, 2008, 8:34 p.m.)
Deposited 5 years, 3 months ago (April 30, 2020, 6:57 p.m.)
Indexed 1 day, 8 hours ago (Aug. 23, 2025, 1:03 a.m.)
Issued 17 years, 7 months ago (Jan. 18, 2008)
Published 17 years, 7 months ago (Jan. 18, 2008)
Published Online 17 years, 7 months ago (Jan. 18, 2008)
Published Print 17 years, 6 months ago (Feb. 1, 2008)
Funders 0

None

@article{Flanagin_2008, title={Microplate-based chromatin immunoprecipitation method, Matrix ChIP: a platform to study signaling of complex genomic events}, volume={36}, ISSN={0305-1048}, url={http://dx.doi.org/10.1093/nar/gkn001}, DOI={10.1093/nar/gkn001}, number={3}, journal={Nucleic Acids Research}, publisher={Oxford University Press (OUP)}, author={Flanagin, Steve and Nelson, Joel D. and Castner, David G. and Denisenko, Oleg and Bomsztyk, Karol}, year={2008}, month=jan, pages={e17} }