DOI: 10.1093/bioinformatics/btl196. Comparative gene marker selection suite

10.1093/bioinformatics/btl196

Crossref journal-article

Oxford University Press (OUP)

Bioinformatics (286)

Abstract

AbstractMotivation: An important step in analyzing expression profiles from microarray data is to identify genes that can discriminate between distinct classes of samples. Many statistical approaches for assigning significance values to genes have been developed. The Comparative Marker Selection suite consists of three modules that allow users to apply and compare different methods of computing significance for each marker gene, a viewer to assess the results, and a tool to create derivative datasets and marker lists based on user-defined significance criteria.Availability: The Comparative Marker Selection application suite is freely available as a GenePattern module. The GenePattern analysis environment is freely available atContact: jgould@broad.mit.edu

Bibliography

Gould, J., Getz, G., Monti, S., Reich, M., & Mesirov, J. P. (2006). Comparative gene marker selection suite. Bioinformatics, 22(15), 1924â1925.

Authors 5

Joshua Gould (first)
Gad Getz (additional)
Stefano Monti (additional)
Michael Reich (additional)
Jill P. Mesirov (additional)

References 8 Referenced 106

10.1111/j.2517-6161.1995.tb02031.x / J. R Stat. Soc. B (Methodological) / Controlling the false discovery rate: a practical and powerful approach to multiple testing by Benjamini (1995)
10.1126/science.286.5439.531 / Science / Molecular Classification of Cancer: class Discovery and Class Prediction by Gene Expression by Golub (1999)
10.1007/978-1-4757-2346-5 / Permutation Tests: A Practical Guide for Testing Hypotheses by Good (1994)
10.1093/bioinformatics/bti587 / Bioinformatics / GeneCruiser: a web service for the annotation of microarray data by Liefeld (2005)
10.1038/nature03702 / Nature / MicroRNA Expression Profiles Classify Human Cancers by Lu (2005)
10.1038/ng0506-500 / Nature Genetics / GenePattern 2.0 by Reich (2006)
10.1073/pnas.1530509100 / PNAS / Statistical significance for genomewide studies by Storey (2003)
{'key': '2023012409121859100_b8', 'article-title': 'Resampling-based multiple testing: examples and methods for P-value adjustment', 'volume-title': 'Wiley Series in Probability and Statistics.', 'author': 'Westfall', 'year': '1993'} / Wiley Series in Probability and Statistics. / Resampling-based multiple testing: examples and methods for P-value adjustment by Westfall (1993)

Dates

Type	When
Created	19 years, 3 months ago (May 18, 2006, 8:24 p.m.)
Deposited	7 months, 2 weeks ago (Jan. 8, 2025, 7:40 p.m.)
Indexed	3 months, 2 weeks ago (May 5, 2025, 12:07 a.m.)
Issued	19 years, 3 months ago (May 18, 2006)
Published	19 years, 3 months ago (May 18, 2006)
Published Online	19 years, 3 months ago (May 18, 2006)
Published Print	19 years ago (Aug. 1, 2006)

Funders 0

None

BibTeX

@article{Gould_2006, title={Comparative gene marker selection suite}, volume={22}, ISSN={1367-4803}, url={http://dx.doi.org/10.1093/bioinformatics/btl196}, DOI={10.1093/bioinformatics/btl196}, number={15}, journal={Bioinformatics}, publisher={Oxford University Press (OUP)}, author={Gould, Joshua and Getz, Gad and Monti, Stefano and Reich, Michael and Mesirov, Jill P.}, year={2006}, month=may, pages={1924–1925} }

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