DOI: 10.1093/bioinformatics/19.2.299. RnaViz 2: an improved representation of RNA secondary structure

RnaViz 2: an improved representation of RNA secondary structure

10.1093/bioinformatics/19.2.299

Crossref journal-article

Oxford University Press (OUP)

Bioinformatics (286)

Abstract

Abstract Summary: RnaViz has been developed to easily create nice, publication quality drawings of RNA secondary structure. RnaViz 2 supports CT, DCSE, and RNAML input formats and improves on many aspects of the first version, notably portability and structure annotation. RnaViz is written using a hybrid programming approach combining pieces written in C and in the scripting language Tcl/Tk, making the program very portable and extensible. Availability: Source code, binaries for Linux and MS Windows, and additional documentation are available athttp://rrna.uia.ac.be/rnaviz/ Contact: derijkp@uia.ua.ac.be * To whom correspondence should be addressed.

Bibliography

De Rijk, P., Wuyts, J., & De Wachter, R. (2003). RnaViz 2: an improved representation of RNA secondary structure. Bioinformatics, 19(2), 299â300.

Authors 3

Peter De Rijk (first)
Jan Wuyts (additional)
Rupert De Wachter (additional)

References 0 Referenced 240

None

Dates

Type	When
Created	22 years, 7 months ago (Jan. 21, 2003, 3:47 p.m.)
Deposited	2 years, 7 months ago (Jan. 25, 2023, 11:44 a.m.)
Indexed	2 months ago (June 20, 2025, 5:42 p.m.)
Issued	22 years, 7 months ago (Jan. 22, 2003)
Published	22 years, 7 months ago (Jan. 22, 2003)
Published Online	22 years, 7 months ago (Jan. 22, 2003)
Published Print	22 years, 7 months ago (Jan. 22, 2003)

Funders 0

None

BibTeX

@article{De_Rijk_2003, title={RnaViz 2: an improved representation of RNA secondary structure}, volume={19}, ISSN={1367-4803}, url={http://dx.doi.org/10.1093/bioinformatics/19.2.299}, DOI={10.1093/bioinformatics/19.2.299}, number={2}, journal={Bioinformatics}, publisher={Oxford University Press (OUP)}, author={De Rijk, Peter and Wuyts, Jan and De Wachter, Rupert}, year={2003}, month=jan, pages={299–300} }

JSON

{
  "indexed": {
    "date-parts": [
      [
        2025,
        6,
        20
      ]
    ],
    "date-time": "2025-06-20T21:42:01Z",
    "timestamp": 1750455721717
  },
  "reference-count": 0,
  "publisher": "Oxford University Press (OUP)",
  "issue": "2",
  "content-domain": {
    "domain": [],
    "crossmark-restriction": false
  },
  "published-print": {
    "date-parts": [
      [
        2003,
        1,
        22
      ]
    ]
  },
  "abstract": "<jats:title>Abstract</jats:title>\n               <jats:p>Summary: RnaViz has been developed to easily create nice, publication quality drawings of RNA secondary structure. RnaViz 2 supports CT, DCSE, and RNAML input formats and improves on many aspects of the first version, notably portability and structure annotation. RnaViz is written using a hybrid programming approach combining pieces written in C and in the scripting language Tcl/Tk, making the program very portable and extensible.</jats:p>\n               <jats:p>Availability: Source code, binaries for Linux and MS Windows, and additional documentation are available athttp://rrna.uia.ac.be/rnaviz/</jats:p>\n               <jats:p>Contact: derijkp@uia.ua.ac.be</jats:p>\n               <jats:p>* To whom correspondence should be addressed.</jats:p>",
  "DOI": "10.1093/bioinformatics/19.2.299",
  "type": "journal-article",
  "created": {
    "date-parts": [
      [
        2003,
        1,
        21
      ]
    ],
    "date-time": "2003-01-21T20:47:16Z",
    "timestamp": 1043182036000
  },
  "page": "299-300",
  "source": "Crossref",
  "is-referenced-by-count": 240,
  "title": "RnaViz 2: an improved representation of RNA secondary structure",
  "prefix": "10.1093",
  "volume": "19",
  "author": [
    {
      "given": "Peter",
      "family": "De Rijk",
      "sequence": "first",
      "affiliation": [
        {
          "name": "Departement Biomedische Wetenschappen, Universiteit Antwerpen (UIA), Universiteitsplein 1, B-2610 Antwerpen, Belgium"
        }
      ]
    },
    {
      "given": "Jan",
      "family": "Wuyts",
      "sequence": "additional",
      "affiliation": [
        {
          "name": "Departement Biomedische Wetenschappen, Universiteit Antwerpen (UIA), Universiteitsplein 1, B-2610 Antwerpen, Belgium"
        }
      ]
    },
    {
      "given": "Rupert",
      "family": "De Wachter",
      "sequence": "additional",
      "affiliation": [
        {
          "name": "Departement Biomedische Wetenschappen, Universiteit Antwerpen (UIA), Universiteitsplein 1, B-2610 Antwerpen, Belgium"
        }
      ]
    }
  ],
  "member": "286",
  "published-online": {
    "date-parts": [
      [
        2003,
        1,
        22
      ]
    ]
  },
  "container-title": "Bioinformatics",
  "original-title": [],
  "language": "en",
  "link": [
    {
      "URL": "https://academic.oup.com/bioinformatics/article-pdf/19/2/299/48903962/bioinformatics_19_2_299.pdf",
      "content-type": "application/pdf",
      "content-version": "vor",
      "intended-application": "syndication"
    },
    {
      "URL": "https://academic.oup.com/bioinformatics/article-pdf/19/2/299/48903962/bioinformatics_19_2_299.pdf",
      "content-type": "unspecified",
      "content-version": "vor",
      "intended-application": "similarity-checking"
    }
  ],
  "deposited": {
    "date-parts": [
      [
        2023,
        1,
        25
      ]
    ],
    "date-time": "2023-01-25T16:44:27Z",
    "timestamp": 1674665067000
  },
  "score": 1,
  "resource": {
    "primary": {
      "URL": "https://academic.oup.com/bioinformatics/article/19/2/299/372776"
    }
  },
  "subtitle": [],
  "short-title": [],
  "issued": {
    "date-parts": [
      [
        2003,
        1,
        22
      ]
    ]
  },
  "references-count": 0,
  "journal-issue": {
    "issue": "2",
    "published-print": {
      "date-parts": [
        [
          2003,
          1,
          22
        ]
      ]
    }
  },
  "URL": "http://dx.doi.org/10.1093/bioinformatics/19.2.299",
  "relation": {},
  "ISSN": [
    "1367-4811",
    "1367-4803"
  ],
  "subject": [],
  "published-other": {
    "date-parts": [
      [
        2003,
        1,
        22
      ]
    ]
  },
  "published": {
    "date-parts": [
      [
        2003,
        1,
        22
      ]
    ]
  }
}