DOI: 10.1093/bioinformatics/16.8.741. A comparison of signal sequence prediction methods using a test set of signal peptides

A comparison of signal sequence prediction methods using a test set of signal peptides

10.1093/bioinformatics/16.8.741

Crossref journal-article

Oxford University Press (OUP)

Bioinformatics (286)

Abstract

Abstract Summary: We describe the creation of a test set containing secretory and non-secretory proteins. Five existing prediction programs for signal sequences and their cleavage sites are compared on the basis of this test set: SPScan, SigCleave, SignalP V1.1, SignalP V2.0.b2-HMM and SignalP V2.0.b2-NN. Availability: Detailed results, the test set and the script to create the test set are available at ftp://ftp.ebi.ac.uk/pub/contrib/swissprot/testsets/signal/ Contact: hhe@ebi.ac.uk

Authors 3

Kerstin M.L. Menne (first)
Henning Hermjakob (additional)
Rolf Apweiler (additional)

References 0 Referenced 98

None

Dates

Type	When
Created	23 years, 1 month ago (July 26, 2002, 6:55 p.m.)
Deposited	2 years, 7 months ago (Jan. 24, 2023, 3:20 a.m.)
Indexed	1 month, 3 weeks ago (July 7, 2025, 8:04 a.m.)
Issued	25 years, 1 month ago (Aug. 1, 2000)
Published	25 years, 1 month ago (Aug. 1, 2000)
Published Online	25 years, 1 month ago (Aug. 1, 2000)
Published Print	25 years, 1 month ago (Aug. 1, 2000)

Funders 0

None

BibTeX

@article{Menne_2000, title={A comparison of signal sequence prediction methods using a test set of signal peptides}, volume={16}, ISSN={1367-4803}, url={http://dx.doi.org/10.1093/bioinformatics/16.8.741}, DOI={10.1093/bioinformatics/16.8.741}, number={8}, journal={Bioinformatics}, publisher={Oxford University Press (OUP)}, author={Menne, Kerstin M.L. and Hermjakob, Henning and Apweiler, Rolf}, year={2000}, month=aug, pages={741–742} }

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