Bibliography
Patterson, N., Hattangadi, N., Lane, B., Lohmueller, K. E., Hafler, D. A., Oksenberg, J. R., Hauser, S. L., Smith, M. W., OâBrien, S. J., Altshuler, D., Daly, M. J., & Reich, D. (2004). Methods for High-Density Admixture Mapping of Disease Genes. The American Journal of Human Genetics, 74(5), 979â1000.
Authors
12
- Nick Patterson (first)
- Neil Hattangadi (additional)
- Barton Lane (additional)
- Kirk E. Lohmueller (additional)
- David A. Hafler (additional)
- Jorge R. Oksenberg (additional)
- Stephen L. Hauser (additional)
- Michael W. Smith (additional)
- Stephen J. O’Brien (additional)
- David Altshuler (additional)
- Mark J. Daly (additional)
- David Reich (additional)
References
69
Referenced
388
10.1038/79216
/ Nat Genet / The common PPARγ Pro12Ala polymorphism is associated with decreased risk of type 2 diabetes by Altshuler (2000)10.1007/BF01441146
/ Genetica / A method for quantifying differentiation between populations at multi-allelic loci and its implications for investigating identity and paternity by Balding (1995)10.1086/367781
/ Am J Hum Genet / HLA-DR2 dose effect on susceptibility to multiple sclerosis and influence on disease course by Barcellos (2003)10.1214/aoms/1177697196
/ Ann Math Stat / A maximization technique occurring in the statistical analysis of probabilistic functions of Markov chains by Baum (1970){'key': '10.1086/420871_bib6', 'volume': 'Vol I', 'author': 'Bickel', 'year': '2001'}
by Bickel (2001)10.1038/ng1090
/ Nat Genet / Discovering genotypes underlying human phenotypes: past successes for Mendelian disease, future approaches for complex disease by Botstein (2003){'key': '10.1086/420871_bib8', 'first-page': '59', 'article-title': 'Linkage disequilibrium in admixed populations: Applications in gene mapping', 'volume': '85', 'author': 'Briscoe', 'year': '1994', 'journal-title': 'J Hered'}
/ J Hered / Linkage disequilibrium in admixed populations: Applications in gene mapping by Briscoe (1994)10.1038/ng1128
/ Nat Genet / Additional SNPs and linkage-disequilibrium analyses are necessary for whole-genome association studies in humans by Carlson (2003)10.1073/pnas.85.23.9119
/ Proc Natl Acad Sci USA / Admixture as a tool for finding linked genes and detecting that difference from allelic association between loci by Chakraborty (1988){'key': '10.1086/420871_bib11', 'series-title': 'Monte Carlo methods in Bayesian computation', 'author': 'Chen', 'year': '2000'}
/ Monte Carlo methods in Bayesian computation by Chen (2000)10.1126/science.278.5343.1580
/ Science / Variations on a theme: cataloging human DNA sequence variation by Collins (1997)10.1007/s00439-003-0961-1
/ Hum Genet / Markers informative for ancestry demonstrate consistent megabase-length linkage disequilibrium in the African American population by Collins-Schramm (2003)10.1046/j.1469-1809.1999.6340301.x
/ Ann Hum Genet / Apolipoprotein E (APOE) allele distribution in the world. Is APOE*4 a “thrifty” allele? by Corbo (1999)10.1159/000154327
/ Hum Hered / BalI and MspI polymorphisms of the dopamine D3 receptor gene in African Blacks and Caucasians by Crocq (1996)10.1038/ng1001-229
/ Nat Genet / High-resolution haplotype structure in the human genome by Daly (2001)10.1016/S0140-6736(05)60603-4
/ Lancet / Mortality differences between black and white men in the USA: contribution of income and other risk factors among men screened for the MRFIT. MRFIT Research Group. Multiple Risk Factor Intervention Trial by Davey Smith (1998)10.1111/j.0006-341X.1999.00997.x
/ Biometrics / Genomic control for association studies by Devlin (1999){'key': '10.1086/420871_bib19', 'first-page': '143', 'article-title': 'CTLA4 alanine-17 confers genetic susceptibility to Graves’ disease and to type 1 diabetes mellitus', 'volume': '82', 'author': 'Donner', 'year': '1997', 'journal-title': 'J Clin Endocrinol Metab'}
/ J Clin Endocrinol Metab / CTLA4 alanine-17 confers genetic susceptibility to Graves’ disease and to type 1 diabetes mellitus by Donner (1997){'key': '10.1086/420871_bib20', 'series-title': 'Biological sequence analysis', 'author': 'Durbin', 'year': '1998'}
/ Biological sequence analysis by Durbin (1998)10.1093/genetics/164.4.1567
/ Genetics / Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies by Falush (2003)10.1001/jama.1997.03550160069041
/ JAMA / Effects of age, sex, and ethnicity on the association between apolipoprotein E genotype and Alzheimer disease: a meta-analysis. APOE and Alzheimer Disease Meta Analysis Consortium by Farrer (1997)10.1126/science.1069424
/ Science / The structure of haplotype blocks in the human genome by Gabriel (2002){'key': '10.1086/420871_bib24', 'series-title': 'Bayesian data analysis', 'author': 'Gelman', 'year': '1995'}
/ Bayesian data analysis by Gelman (1995)10.1086/376417
/ Am J Hum Genet / IBD5 is a general risk factor for inflammatory bowel disease: replication of association with Crohn disease and identification of a novel association with ulcerative colitis by Giallourakis (2003)10.2307/2986138
/ Appl Stat / Adaptive rejection Metropolis sampling within Gibbs sampling by Gilks (1995){'key': '10.1086/420871_bib27', 'series-title': 'Markov Chain Monte Carlo in practice', 'year': '1996'}
/ Markov Chain Monte Carlo in practice (1996)10.2307/2347565
/ Appl Stat / Adaptive rejection sampling for Gibbs sampling by Gilks (1992)10.1186/1479-7364-1-1-52
/ Hum Genom / Measuring and using admixture to study the genetics of complex disease by Halder (2003)10.1038/352595a0
/ Nature / Common west African HLA antigens are associated with protection from severe malaria by Hill (1991)10.1097/00125817-200203000-00002
/ Genet Med / A comprehensive review of genetic association studies by Hirschhorn (2002)10.1086/375613
/ Am J Hum Genet / Control of confounding of genetic associations in stratified populations by Hoggart (2003)10.1212/WNL.29.9_Part_1.1228
/ Neurology / Epidemiology of multiple sclerosis in US veterans. 1. Race, sex, and geographic distribution by Kurtzke (1979)10.1073/pnas.84.8.2363
/ Proc Natl Acad Sci USA / Construction of multilocus genetic linkage maps in humans by Lander (1987)10.1038/ng1195-241
/ Nat Genet / Genetic dissection of complex traits: guidelines for interpreting and reporting linkage results by Lander (1995)10.1086/302820
/ Am J Hum Genet / Significant admixture linkage disequilibrium across 30 cM around the FY locus in African-Americans by Lautenberger (2000)10.1002/1098-2272(200101)20:1<17::AID-GEPI3>3.0.CO;2-Q
/ Genet Epidemiol / A Bayesian hierarchical model for allele frequencies by Lockwood (2001)10.1038/ng1071
/ Nat Genet / Meta-analysis of genetic association studies supports a contribution of common variants to susceptibility to common disease by Lohmueller (2003){'key': '10.1086/420871_bib39', 'first-page': '188', 'article-title': 'Mapping genes underlying ethnic differences in disease risk by linkage disequilibrium in recently admixed populations', 'volume': '60', 'author': 'McKeigue', 'year': '1997', 'journal-title': 'Am J Hum Genet'}
/ Am J Hum Genet / Mapping genes underlying ethnic differences in disease risk by linkage disequilibrium in recently admixed populations by McKeigue (1997)10.1086/301908
/ Am J Hum Genet / Mapping genes that underlie ethnic differences in disease risk: methods for detecting linkage in populations, by conditioning on parental admixture by McKeigue (1998)10.1046/j.1469-1809.2000.6420171.x
/ Ann Hum Genet / Estimation of admixture and detection of linkage in admixed populations by a Bayesian approach: application to African-American populations by McKeigue (2000)10.1086/324710
/ Am J Hum Genet / Sporadic—but not variant—Creutzfeldt-Jakob disease is associated with polymorphisms upstream of PRNP exon 1 by Mead (2001)10.1086/338454
/ Am J Hum Genet / Nucleotide diversity and haplotype structure of the human angiotensinogen gene in two populations by Nakajima (2002)10.1111/1467-9868.00357
/ J Roy Stat Soc Ser B / Assessing population differentiation and isolation from single-nucleotide polymorphism data by Nicholson (2002)10.1086/380997
/ Am J Hum Genet / Mapping multiple sclerosis susceptibility to the HLA-DR locus in African Americans by Oksenberg (2004)10.2337/diabetes.50.9.2169
/ Diabetes / Association of a novel point mutation (C159G) of the CTLA4 gene with type 1 diabetes in West Africans but not in Chinese by Osei-Hyiaman (2001)10.1086/302148
/ Am J Hum Genet / Estimating African-American admixture proportions by use of population-specific alleles by Parra (1998)10.2337/diacare.13.3.364
/ Diabetes Care / Insulin gene in diabetes. Analysis through RFLP by Permutt (1990)10.1086/316935
/ Am J Hum Genet / Population structure in admixed populations: effect of admixture dynamics on the pattern of linkage disequilibrium by Pfaff (2001)10.1109/5.18626
/ Proceedings of the IEEE / A tutorial on hidden Markov models by Rabiner (1989)10.1016/S0140-6736(95)91803-5
/ Lancet / World distribution of factor V Leiden by Rees (1995){'key': '10.1086/420871_bib52', 'series-title': 'Stochastic simulation', 'author': 'Ripley', 'year': '1987'}
/ Stochastic simulation by Ripley (1987)10.1038/ng1001-223
/ Nat Genet / Genetic variation in the 5q31 cytokine gene cluster confers susceptibility to Crohn disease by Rioux (2001){'issue': 'Suppl 51', 'key': '10.1086/420871_bib54', 'first-page': '13', 'article-title': 'Mapping genes for complex disease using association studies with recently admixed populations', 'author': 'Risch', 'year': '1992', 'journal-title': 'Am J Hum Genet'}
/ Am J Hum Genet / Mapping genes for complex disease using association studies with recently admixed populations by Risch (1992)10.1126/science.273.5281.1516
/ Science / The future of genetic studies of complex human diseases by Risch (1996)10.1038/35015718
/ Nature / Searching for genetic determinants in the new millennium by Risch (2000)10.1182/blood.V85.6.1504.bloodjournal8561504
/ Blood / High risk of thrombosis in patients homozygous for factor V Leiden (activated protein C resistance) by Rosendaal (1995)10.1161/01.HYP.27.3.558
/ Hypertension / Polymorphisms of renin-angiotensin genes among Nigerians, Jamaicans, and African Americans by Rotimi (1996)10.1007/s00439-002-0896-y
/ Hum Genet / Skin pigmentation, biogeographical ancestry and admixture mapping by Shriver (2003)10.1056/NEJMoa021986
/ N Engl J Med / Association of multidrug resistance in epilepsy with a polymorphism in the drug-transporter gene ABCB1 by Siddiqui (2003)10.1681/ASN.V1091921
/ J Am Soc Nephrol / Worldwide ethnic distribution of the G protein β3 subunit 825T allele and its association with obesity in Caucasian, Chinese, and Black African individuals by Siffert (1999)10.1086/323922
/ Am J Hum Genet / Markers for mapping by admixture linkage disequilibrium in African American and Hispanic populations by Smith (2001)10.1086/420856
/ Am J Hum Genet / A high-density admixture map for disease gene discovery in African Americans by Smith (2004)10.1002/humu.9157
/ Hum Mutat / Prion susceptibility and protective alleles exhibit marked geographic differences by Soldevila (2003){'key': '10.1086/420871_bib65', 'first-page': '809', 'article-title': 'Mapping by admixture linkage disequilibrium in human populations: limits and guidelines', 'volume': '55', 'author': 'Stephens', 'year': '1994', 'journal-title': 'Am J Hum Genet'}
/ Am J Hum Genet / Mapping by admixture linkage disequilibrium in human populations: limits and guidelines by Stephens (1994)10.1093/imammb/8.3.149
/ J Math Appl Med Biol / Evaluation of likelihood ratios for complex genetic models by Thompson (1991)10.1038/nature01621
/ Nature / Association of the T-cell regulatory gene CTLA4 with susceptibility to autoimmune disease by Ueda (2003)10.1002/ana.10788
/ Ann Neurol / Multiple sclerosis in US veterans of the Vietnam era and later military service: race, sex, and geography by Wallin (2003)10.1086/303083
/ Am J Hum Genet / Consistent long-range linkage disequilibrium generated by admixture in a Bantu-Semitic hybrid population by Wilson (2000)10.1002/(SICI)1098-2272(1999)17:2<79::AID-GEPI1>3.0.CO;2-N
/ Genet Epidemiol / Multipoint linkage disequilibrium mapping with particular reference to the African-American population by Zheng (1999)
Dates
Type | When |
---|---|
Created | 21 years, 4 months ago (April 16, 2004, 2:41 p.m.) |
Deposited | 4 years, 2 months ago (June 15, 2021, 1:58 p.m.) |
Indexed | 25 minutes ago (Sept. 3, 2025, 9:37 p.m.) |
Issued | 21 years, 4 months ago (May 1, 2004) |
Published | 21 years, 4 months ago (May 1, 2004) |
Published Print | 21 years, 4 months ago (May 1, 2004) |
@article{Patterson_2004, title={Methods for High-Density Admixture Mapping of Disease Genes}, volume={74}, ISSN={0002-9297}, url={http://dx.doi.org/10.1086/420871}, DOI={10.1086/420871}, number={5}, journal={The American Journal of Human Genetics}, publisher={Elsevier BV}, author={Patterson, Nick and Hattangadi, Neil and Lane, Barton and Lohmueller, Kirk E. and Hafler, David A. and Oksenberg, Jorge R. and Hauser, Stephen L. and Smith, Michael W. and O’Brien, Stephen J. and Altshuler, David and Daly, Mark J. and Reich, David}, year={2004}, month=may, pages={979–1000} }