DOI: 10.1080/07391102.1998.10508279. Continuum Solvent Studies of the Stability of RNA Hairpin Loops and Helices

Continuum Solvent Studies of the Stability of RNA Hairpin Loops and Helices

10.1080/07391102.1998.10508279

Crossref journal-article

Informa UK Limited

Journal of Biomolecular Structure and Dynamics (301)

Bibliography

Srinivasan, J., Miller, J., Kollman, P. A., & Case, D. A. (1998). Continuum Solvent Studies of the Stability of RNA Hairpin Loops and Helices. Journal of Biomolecular Structure and Dynamics, 16(3), 671â682.

Authors 4

Jayashree Srinivasan (first)
Jennifer Miller (additional)
Peter A. Kollman (additional)
David A. Case (additional)

References 47 Referenced 206

10.1002/(SICI)1097-0282(1997)44:1<3::AID-BIP2>3.0.CO;2-Z / Biopolymers by Holbrook S. R. (1997)
10.1016/0079-6565(96)01028-X
Beveridge, D. L., Young, M. A. and Sprous, D.Molecular Modeling of Nucleic AcidsEdited by: Leontis, N. B. and SantaLucia, J. 260–284. Washington, DC: American Chemical Society.
Cheatham, T. E. III, Miller, J. L., Spector, T. I., Cieplak, P. and Kollman, P. A.Molecular Modeling of Nucleic AcidsEdited by: Leontis, N. B. and SantaLucia, J. 285–303. Washington, DC: American Chemical Society.
10.1016/S0959-440X(98)80044-4
10.1021/ja00124a002
{'key': 'CIT0007', 'volume': '1171194611975', 'author': 'MacKerell A. D.', 'year': '1995', 'journal-title': 'J. Am. Chem. Soc.'} / J. Am. Chem. Soc. by MacKerell A. D. (1995)
10.1063/1.470117
10.1021/ja00122a034 / J. Am. Chem. Soc. by York D. M. (1995)
10.1021/jp9527315 / J. Phys. Chem. by Ösapay K. (1996)
10.1021/ja963516k / J. Am. Chem. Soc. by Bashford D. (1997)
10.1006/jmbi.1997.1103
10.1006/jmbi.1995.0502
10.1006/jmbi.1995.0503
10.1006/jmbi.1996.0364 / J. Mol. Biol. by Yang A.-S. (1996)
10.1002/prot.340180205 / Proteins by Smith K. C. (1994)
10.1021/ja981844+
10.1021/ja981307p
10.1021/bi00227a016
10.1006/jmbi.1995.0381
10.1006/jmbi.1997.1113 / J. Mol. Biol. by Miller J. L. (1997)
10.1021/ja9727023 / J. Am. Chem. Soc. by Simmerling C. (1998)
10.1006/jmbi.1997.0964
10.1016/S0092-8674(05)80004-2
10.1038/353579a0
10.1016/0010-4655(95)00041-D / Comp. Phys. Commun. by Pearl man D. A. (1995)
10.1063/1.444325
10.1006/jmbi.1993.1104
Saenger, W. 1984. “Principles of nucleic acid structure”. Springer-Verlag, Inc., New York, USA (10.1007/978-1-4612-5190-3)
10.1021/j100058a043
10.1016/0022-2836(82)90505-8
10.1146/annurev.bb.19.060190.001505
10.1021/j100108a002
10.1002/jcc.540090407
10.1021/j100382a068
10.1021/ja00172a038
10.1021/jp961992r
10.1016/0009-2614(95)01082-K
10.1021/jp961710n
10.1002/(SICI)1096-987X(19980415)19:5<548::AID-JCC7>3.0.CO;2-M
McQuarrie, D. A. 1976. “Statistical Mechanics”, Harper and Rowe, New York
10.1146/annurev.pc.46.100195.003301
10.1016/S0959-440X(96)80052-2
10.1021/jp971521k / J. Phys. Chem. B. by Chen S. W. (1997)
10.1021/ma50003a019
10.1016/S0006-3495(94)80970-1 / Biophys J. by Garcia A. E. (1994)
10.1080/07391102.1998.10508245 / J. Biom. Struct. Dyn. by Cheatham T. E. (1998)

Dates

Type	When
Created	13 years, 3 months ago (May 21, 2012, 7:20 a.m.)
Deposited	6 years, 1 month ago (June 28, 2019, 7:33 p.m.)
Indexed	1 month, 3 weeks ago (June 28, 2025, 12:01 p.m.)
Issued	26 years, 8 months ago (Dec. 1, 1998)
Published	26 years, 8 months ago (Dec. 1, 1998)
Published Print	26 years, 8 months ago (Dec. 1, 1998)

Funders 0

None

BibTeX

@article{Srinivasan_1998, title={Continuum Solvent Studies of the Stability of RNA Hairpin Loops and Helices}, volume={16}, ISSN={1538-0254}, url={http://dx.doi.org/10.1080/07391102.1998.10508279}, DOI={10.1080/07391102.1998.10508279}, number={3}, journal={Journal of Biomolecular Structure and Dynamics}, publisher={Informa UK Limited}, author={Srinivasan, Jayashree and Miller, Jennifer and Kollman, Peter A. and Case, David A.}, year={1998}, month=dec, pages={671–682} }

JSON

{
  "indexed": {
    "date-parts": [
      [
        2025,
        6,
        28
      ]
    ],
    "date-time": "2025-06-28T16:01:16Z",
    "timestamp": 1751126476644
  },
  "reference-count": 47,
  "publisher": "Informa UK Limited",
  "issue": "3",
  "content-domain": {
    "domain": [],
    "crossmark-restriction": false
  },
  "published-print": {
    "date-parts": [
      [
        1998,
        12
      ]
    ]
  },
  "DOI": "10.1080/07391102.1998.10508279",
  "type": "journal-article",
  "created": {
    "date-parts": [
      [
        2012,
        5,
        21
      ]
    ],
    "date-time": "2012-05-21T11:20:39Z",
    "timestamp": 1337599239000
  },
  "page": "671-682",
  "source": "Crossref",
  "is-referenced-by-count": 206,
  "title": "Continuum Solvent Studies of the Stability of RNA Hairpin Loops and Helices",
  "prefix": "10.1080",
  "volume": "16",
  "author": [
    {
      "given": "Jayashree",
      "family": "Srinivasan",
      "sequence": "first",
      "affiliation": []
    },
    {
      "given": "Jennifer",
      "family": "Miller",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Peter A.",
      "family": "Kollman",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "David A.",
      "family": "Case",
      "sequence": "additional",
      "affiliation": []
    }
  ],
  "member": "301",
  "reference": [
    {
      "key": "CIT0001",
      "doi-asserted-by": "crossref",
      "first-page": "3",
      "DOI": "10.1002/(SICI)1097-0282(1997)44:1<3::AID-BIP2>3.0.CO;2-Z",
      "volume": "44",
      "author": "Holbrook S. R.",
      "year": "1997",
      "journal-title": "Biopolymers"
    },
    {
      "key": "CIT0002",
      "doi-asserted-by": "publisher",
      "DOI": "10.1016/0079-6565(96)01028-X"
    },
    {
      "key": "CIT0003",
      "unstructured": "Beveridge, D. L., Young, M. A. and Sprous, D.Molecular Modeling of Nucleic AcidsEdited by: Leontis, N. B. and SantaLucia, J. 260\u2013284. Washington, DC: American Chemical Society."
    },
    {
      "key": "CIT0004",
      "unstructured": "Cheatham, T. E. III, Miller, J. L., Spector, T. I., Cieplak, P. and Kollman, P. A.Molecular Modeling of Nucleic AcidsEdited by: Leontis, N. B. and SantaLucia, J. 285\u2013303. Washington, DC: American Chemical Society."
    },
    {
      "key": "CIT0005",
      "doi-asserted-by": "publisher",
      "DOI": "10.1016/S0959-440X(98)80044-4"
    },
    {
      "key": "CIT0006",
      "doi-asserted-by": "publisher",
      "DOI": "10.1021/ja00124a002"
    },
    {
      "key": "CIT0007",
      "volume": "1171194611975",
      "author": "MacKerell A. D.",
      "year": "1995",
      "journal-title": "J. Am. Chem. Soc."
    },
    {
      "key": "CIT0008",
      "doi-asserted-by": "publisher",
      "DOI": "10.1063/1.470117"
    },
    {
      "key": "CIT0009",
      "doi-asserted-by": "crossref",
      "first-page": "5001",
      "DOI": "10.1021/ja00122a034",
      "volume": "117",
      "author": "York D. M.",
      "year": "1995",
      "journal-title": "J. Am. Chem. Soc."
    },
    {
      "key": "CIT0010",
      "doi-asserted-by": "crossref",
      "first-page": "26982705",
      "DOI": "10.1021/jp9527315",
      "volume": "100",
      "author": "\u00d6sapay K.",
      "year": "1996",
      "journal-title": "J. Phys. Chem."
    },
    {
      "key": "CIT0011",
      "doi-asserted-by": "crossref",
      "first-page": "4964",
      "DOI": "10.1021/ja963516k",
      "volume": "119",
      "author": "Bashford D.",
      "year": "1997",
      "journal-title": "J. Am. Chem. Soc."
    },
    {
      "key": "CIT0012",
      "doi-asserted-by": "publisher",
      "DOI": "10.1006/jmbi.1997.1103"
    },
    {
      "key": "CIT0013",
      "doi-asserted-by": "publisher",
      "DOI": "10.1006/jmbi.1995.0502"
    },
    {
      "key": "CIT0014",
      "doi-asserted-by": "publisher",
      "DOI": "10.1006/jmbi.1995.0503"
    },
    {
      "key": "CIT0015",
      "doi-asserted-by": "crossref",
      "first-page": "873",
      "DOI": "10.1006/jmbi.1996.0364",
      "volume": "259",
      "author": "Yang A.-S.",
      "year": "1996",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "CIT0016",
      "doi-asserted-by": "crossref",
      "first-page": "119",
      "DOI": "10.1002/prot.340180205",
      "volume": "18",
      "author": "Smith K. C.",
      "year": "1994",
      "journal-title": "Proteins"
    },
    {
      "key": "CIT0017",
      "doi-asserted-by": "publisher",
      "DOI": "10.1021/ja981844+"
    },
    {
      "key": "CIT0018",
      "doi-asserted-by": "publisher",
      "DOI": "10.1021/ja981307p"
    },
    {
      "key": "CIT0019",
      "doi-asserted-by": "publisher",
      "DOI": "10.1021/bi00227a016"
    },
    {
      "key": "CIT0020",
      "doi-asserted-by": "publisher",
      "DOI": "10.1006/jmbi.1995.0381"
    },
    {
      "key": "CIT0021",
      "doi-asserted-by": "crossref",
      "first-page": "436",
      "DOI": "10.1006/jmbi.1997.1113",
      "volume": "270",
      "author": "Miller J. L.",
      "year": "1997",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "CIT0022",
      "doi-asserted-by": "crossref",
      "first-page": "7149",
      "DOI": "10.1021/ja9727023",
      "volume": "120",
      "author": "Simmerling C.",
      "year": "1998",
      "journal-title": "J. Am. Chem. Soc."
    },
    {
      "key": "CIT0023",
      "doi-asserted-by": "publisher",
      "DOI": "10.1006/jmbi.1997.0964"
    },
    {
      "key": "CIT0024",
      "doi-asserted-by": "publisher",
      "DOI": "10.1016/S0092-8674(05)80004-2"
    },
    {
      "key": "CIT0026",
      "doi-asserted-by": "publisher",
      "DOI": "10.1038/353579a0"
    },
    {
      "key": "CIT0027",
      "doi-asserted-by": "crossref",
      "first-page": "1",
      "DOI": "10.1016/0010-4655(95)00041-D",
      "volume": "91",
      "author": "Pearl man D. A.",
      "year": "1995",
      "journal-title": "Comp. Phys. Commun."
    },
    {
      "key": "CIT0028",
      "doi-asserted-by": "publisher",
      "DOI": "10.1063/1.444325"
    },
    {
      "key": "CIT0029",
      "doi-asserted-by": "publisher",
      "DOI": "10.1006/jmbi.1993.1104"
    },
    {
      "key": "CIT0030",
      "doi-asserted-by": "crossref",
      "unstructured": "Saenger, W. 1984. \u201cPrinciples of nucleic acid structure\u201d. Springer-Verlag, Inc., New York, USA",
      "DOI": "10.1007/978-1-4612-5190-3"
    },
    {
      "key": "CIT0031",
      "doi-asserted-by": "publisher",
      "DOI": "10.1021/j100058a043"
    },
    {
      "key": "CIT0032",
      "doi-asserted-by": "publisher",
      "DOI": "10.1016/0022-2836(82)90505-8"
    },
    {
      "key": "CIT0033",
      "doi-asserted-by": "publisher",
      "DOI": "10.1146/annurev.bb.19.060190.001505"
    },
    {
      "key": "CIT0034",
      "doi-asserted-by": "publisher",
      "DOI": "10.1021/j100108a002"
    },
    {
      "key": "CIT0035",
      "doi-asserted-by": "publisher",
      "DOI": "10.1002/jcc.540090407"
    },
    {
      "key": "CIT0036",
      "doi-asserted-by": "publisher",
      "DOI": "10.1021/j100382a068"
    },
    {
      "key": "CIT0037",
      "doi-asserted-by": "publisher",
      "DOI": "10.1021/ja00172a038"
    },
    {
      "key": "CIT0038",
      "doi-asserted-by": "publisher",
      "DOI": "10.1021/jp961992r"
    },
    {
      "key": "CIT0039",
      "doi-asserted-by": "publisher",
      "DOI": "10.1016/0009-2614(95)01082-K"
    },
    {
      "key": "CIT0040",
      "doi-asserted-by": "publisher",
      "DOI": "10.1021/jp961710n"
    },
    {
      "key": "CIT0041",
      "doi-asserted-by": "publisher",
      "DOI": "10.1002/(SICI)1096-987X(19980415)19:5<548::AID-JCC7>3.0.CO;2-M"
    },
    {
      "key": "CIT0042",
      "unstructured": "McQuarrie, D. A. 1976. \u201cStatistical Mechanics\u201d, Harper and Rowe, New York"
    },
    {
      "key": "CIT0043",
      "doi-asserted-by": "publisher",
      "DOI": "10.1146/annurev.pc.46.100195.003301"
    },
    {
      "key": "CIT0044",
      "doi-asserted-by": "publisher",
      "DOI": "10.1016/S0959-440X(96)80052-2"
    },
    {
      "key": "CIT0045",
      "doi-asserted-by": "crossref",
      "first-page": "9113",
      "DOI": "10.1021/jp971521k",
      "volume": "101",
      "author": "Chen S. W.",
      "year": "1997",
      "journal-title": "J. Phys. Chem. B."
    },
    {
      "key": "CIT0046",
      "doi-asserted-by": "publisher",
      "DOI": "10.1021/ma50003a019"
    },
    {
      "key": "CIT0047",
      "doi-asserted-by": "crossref",
      "first-page": "1742",
      "DOI": "10.1016/S0006-3495(94)80970-1",
      "volume": "66",
      "author": "Garcia A. E.",
      "year": "1994",
      "journal-title": "Biophys J."
    },
    {
      "key": "CIT0048",
      "doi-asserted-by": "crossref",
      "first-page": "265",
      "DOI": "10.1080/07391102.1998.10508245",
      "volume": "16",
      "author": "Cheatham T. E.",
      "year": "1998",
      "journal-title": "J. Biom. Struct. Dyn."
    }
  ],
  "container-title": "Journal of Biomolecular Structure and Dynamics",
  "original-title": [],
  "language": "en",
  "link": [
    {
      "URL": "http://www.tandfonline.com/doi/pdf/10.1080/10256018808623883",
      "content-type": "unspecified",
      "content-version": "vor",
      "intended-application": "similarity-checking"
    }
  ],
  "deposited": {
    "date-parts": [
      [
        2019,
        6,
        28
      ]
    ],
    "date-time": "2019-06-28T23:33:32Z",
    "timestamp": 1561764812000
  },
  "score": 1,
  "resource": {
    "primary": {
      "URL": "http://www.tandfonline.com/doi/abs/10.1080/07391102.1998.10508279"
    }
  },
  "subtitle": [],
  "short-title": [],
  "issued": {
    "date-parts": [
      [
        1998,
        12
      ]
    ]
  },
  "references-count": 47,
  "journal-issue": {
    "issue": "3",
    "published-print": {
      "date-parts": [
        [
          1998,
          12
        ]
      ]
    }
  },
  "alternative-id": [
    "10.1080/07391102.1998.10508279"
  ],
  "URL": "http://dx.doi.org/10.1080/07391102.1998.10508279",
  "relation": {},
  "ISSN": [
    "0739-1102",
    "1538-0254"
  ],
  "subject": [],
  "container-title-short": "Journal of Biomolecular Structure and Dynamics",
  "published": {
    "date-parts": [
      [
        1998,
        12
      ]
    ]
  }
}