DOI: 10.1074/jbc.m204161200. Using Functional Domain Composition and Support Vector Machines for Prediction of Protein Subcellular Location

Using Functional Domain Composition and Support Vector Machines for Prediction of Protein Subcellular Location

10.1074/jbc.m204161200

Crossref journal-article

Elsevier BV

Journal of Biological Chemistry (78)

Bibliography

Chou, K.-C., & Cai, Y.-D. (2002). Using Functional Domain Composition and Support Vector Machines for Prediction of Protein Subcellular Location. Journal of Biological Chemistry, 277(48), 45765â45769.

Authors 2

Kuo-Chen Chou (first)
Yu-Dong Cai (additional)

References 38 Referenced 394

10.1093/nar/25.1.31 / Nucleic Acids Research by Bairoch (2000)
10.1006/jmbi.1994.1267 / J. Mol. Biol. by Nakashima (1994)
10.1006/jmbi.1996.0804 / J. Mol. Biol. by Cedano (1997)
10.1093/nar/26.9.2230 / Nucleic Acids Res. by Reinhardt (1998)
10.1006/bbrc.1998.9498 / Biochem. Biophys. Res. Commun. by Chou (1998)
10.1093/protein/12.2.107 / Protein Eng. by Chou (1999)
10.1002/(SICI)1097-0134(19990101)34:1<137::AID-PROT11>3.0.CO;2-O / Proteins Struct. Funct. Genet. by Chou (1999)
10.2174/1389203003381379 / Curr. Protein Peptide Sci. by Chou (2000)
10.1006/bbrc.2000.3815 / Biochem. Biophys. Res. Comm. by Chou (2000)
10.1006/mcbr.2001.0269 / Mol. Cell Biol. Res. Comm. by Cai (2000)
10.1006/mcbr.2001.0285 / Mol. Cell Biol. Res. Comm. by Cai (2000)
10.1002/prot.1035 / Proteins Struct. Funct. Genet. by Chou (2001)
10.1002/jcb.10030 / J. Cell. Biochem. by Cai (2002)
10.1093/oxfordjournals.jbchem.a135454 / J. Biochem. by Nakashima (1986)
10.1002/prot.340210406 / Proteins Struct. Funct. Genet. by Chou (1995)
10.1016/S0021-9258(17)31748-9 / J. Biol. Chem. by Chou (1994)
10.1093/nar/29.1.58 / Nucleic Acids Res. by Murvai (2001)
10.1016/S0022-2836(05)80360-2 / J. Mol. Biol. by Altschul (1990)
{'key': '10.1074/jbc.M204161200_bib19', 'series-title': 'Statistical Learning Theory', 'author': 'Vapnik', 'year': '1998'} / Statistical Learning Theory by Vapnik (1998)
10.1093/bioinformatics/17.4.349 / Bioinformatics by Ding (2001)
10.1093/bioinformatics/17.5.455 / Bioinformatics by Bock (2001)
10.1006/jmbi.2001.4580 / J. Mol. Biol. by Hua (2001)
{'key': '10.1074/jbc.M204161200_bib23', 'series-title': 'The Nature of Statistical Learning Theory', 'author': 'Vapnik', 'year': '1995'} / The Nature of Statistical Learning Theory by Vapnik (1995)
{'key': '10.1074/jbc.M204161200_bib24', 'series-title': 'Advances in Kernel Methods-Support Vector Learning', 'first-page': '169', 'author': 'Joachims', 'year': '1999'} / Advances in Kernel Methods-Support Vector Learning by Joachims (1999)
{'key': '10.1074/jbc.M204161200_bib25', 'first-page': '273', 'volume': '20', 'author': 'Cortes', 'year': '1995', 'journal-title': 'Machine Learning'} / Machine Learning by Cortes (1995)
{'key': '10.1074/jbc.M204161200_bib26', 'series-title': 'Department of Mathematics', 'author': 'Karush', 'year': '1939'} / Department of Mathematics by Karush (1939)
{'key': '10.1074/jbc.M204161200_bib27', 'series-title': 'Support Vector Machines', 'author': 'Cristianini', 'year': '2000'} / Support Vector Machines by Cristianini (2000)
10.1090/qam/135625 / Q. Appl. Math. by Wolfe (1961)
10.3109/10409239509083488 / Crit. Rev. Biochem. Mol. Biol. by Chou (1995)
10.1002/prot.1045 / Proteins Struct. Funct. Genet. by Cai (2001)
10.1002/prot.1071 / Proteins Struct. Funct. Genet. by Zhou (2001)
{'key': '10.1074/jbc.M204161200_bib32', 'series-title': 'Multivariate Analysis', 'first-page': '322', 'author': 'Mardia', 'year': '1979'} / Multivariate Analysis by Mardia (1979)
{'key': '10.1074/jbc.M204161200_bib33', 'series-title': 'Second Chemical Congress of the North American Continent, Las Vegas, May 1, 1980', 'article-title': 'Abstracts of Papers Part I', 'author': 'Chou', 'year': '1980'} / Second Chemical Congress of the North American Continent, Las Vegas, May 1, 1980 / Abstracts of Papers Part I by Chou (1980)
10.1006/bbrc.1999.1325 / Biochem. Biophys. Res. Comm. by Chou (1999)
{'key': '10.1074/jbc.M204161200_bib35', 'series-title': 'Prediction of Protein Structure and the Principles of Protein Conformation', 'first-page': '549', 'author': 'Chou', 'year': '1989'} / Prediction of Protein Structure and the Principles of Protein Conformation by Chou (1989)
10.1002/(SICI)1097-0134(19980401)31:1<97::AID-PROT8>3.0.CO;2-E / Proteins Struct. Funct. Genet. by Chou (1998)
10.1023/A:1022576400291 / J. Prot. Chem. by Liu (1998)
10.1023/A:1020713915365 / J. Prot. Chem. by Zhou (1998)

Dates

Type	When
Created	22 years, 9 months ago (Nov. 23, 2002, 12:06 a.m.)
Deposited	3 years, 8 months ago (Dec. 16, 2021, 2:36 p.m.)
Indexed	1 month, 2 weeks ago (July 4, 2025, 7:47 a.m.)
Issued	22 years, 9 months ago (Nov. 1, 2002)
Published	22 years, 9 months ago (Nov. 1, 2002)
Published Print	22 years, 9 months ago (Nov. 1, 2002)

Funders 0

None

BibTeX

@article{Chou_2002, title={Using Functional Domain Composition and Support Vector Machines for Prediction of Protein Subcellular Location}, volume={277}, ISSN={0021-9258}, url={http://dx.doi.org/10.1074/jbc.m204161200}, DOI={10.1074/jbc.m204161200}, number={48}, journal={Journal of Biological Chemistry}, publisher={Elsevier BV}, author={Chou, Kuo-Chen and Cai, Yu-Dong}, year={2002}, month=nov, pages={45765–45769} }

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      "volume": "20",
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      "journal-title": "Machine Learning"
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      "key": "10.1074/jbc.M204161200_bib26",
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      "author": "Karush",
      "year": "1939"
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      "key": "10.1074/jbc.M204161200_bib27",
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      "author": "Cristianini",
      "year": "2000"
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      "key": "10.1074/jbc.M204161200_bib28",
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      "first-page": "239",
      "DOI": "10.1090/qam/135625",
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      "author": "Wolfe",
      "year": "1961",
      "journal-title": "Q. Appl. Math."
    },
    {
      "key": "10.1074/jbc.M204161200_bib29",
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      "first-page": "275",
      "DOI": "10.3109/10409239509083488",
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      "first-page": "336",
      "DOI": "10.1002/prot.1045",
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      "first-page": "57",
      "DOI": "10.1002/prot.1071",
      "volume": "44",
      "author": "Zhou",
      "year": "2001",
      "journal-title": "Proteins Struct. Funct. Genet."
    },
    {
      "key": "10.1074/jbc.M204161200_bib32",
      "series-title": "Multivariate Analysis",
      "first-page": "322",
      "author": "Mardia",
      "year": "1979"
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      "key": "10.1074/jbc.M204161200_bib33",
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      "DOI": "10.1006/bbrc.1999.1325",
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      "author": "Chou",
      "year": "1999",
      "journal-title": "Biochem. Biophys. Res. Comm."
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    {
      "key": "10.1074/jbc.M204161200_bib35",
      "series-title": "Prediction of Protein Structure and the Principles of Protein Conformation",
      "first-page": "549",
      "author": "Chou",
      "year": "1989"
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