Crossref journal-article
Proceedings of the National Academy of Sciences
Proceedings of the National Academy of Sciences (341)
Abstract

Transcribed sequences in the human genome can be identified with confidence only by alignment with sequences derived from cDNAs synthesized from naturally occurring mRNAs. We constructed a set of 250,000 cDNAs that represent partial expressed gene sequences and that are biased toward the central coding regions of the resulting transcripts. They are termed ORF expressed sequence tags (ORESTES). The 250,000 ORESTES were assembled into 81,429 contigs. Of these, 1,181 (1.45%) were found to match sequences in chromosome 22 with at least one ORESTES contig for 162 (65.6%) of the 247 known genes, for 67 (44.6%) of the 150 related genes, and for 45 of the 148 (30.4%) EST-predicted genes on this chromosome. Using a set of stringent criteria to validate our sequences, we identified a further 219 previously unannotated transcribed sequences on chromosome 22. Of these, 171 were in fact also defined by EST or full length cDNA sequences available in GenBank but not utilized in the initial annotation of the first human chromosome sequence. Thus despite representing less than 15% of all expressed human sequences in the public databases at the time of the present analysis, ORESTES sequences defined 48 transcribed sequences on chromosome 22 not defined by other sequences. All of the transcribed sequences defined by ORESTES coincided with DNA regions predicted as encoding exons by genscan . ( http://genes.mit.edu/GENSCAN.html ).

Bibliography

de Souza, S. J., Camargo, A. A., Briones, M. R. S., Costa, F. F., Nagai, M. A., Verjovski-Almeida, S., Zago, M. A., Andrade, L. E. C., Carrer, H., El-Dorry, H. F. A., Espreafico, E. M., Habr-Gama, A., Giannella-Neto, D., Goldman, G. H., Gruber, A., Hackel, C., Kimura, E. T., Maciel, R. M. B., Marie, S. K. N., … Simpson, A. J. G. (2000). Identification of human chromosome 22 transcribed sequences with ORF expressed sequence tags. Proceedings of the National Academy of Sciences, 97(23), 12690–12693.

Authors 79
  1. Sandro J. de Souza (first)
  2. Anamaria A. Camargo (additional)
  3. Marcelo R. S. Briones (additional)
  4. Fernando F. Costa (additional)
  5. Maria Aparecida Nagai (additional)
  6. Sergio Verjovski-Almeida (additional)
  7. Marco A. Zago (additional)
  8. Luis Eduardo C. Andrade (additional)
  9. Helaine Carrer (additional)
  10. Hamza F. A. El-Dorry (additional)
  11. Enilza M. Espreafico (additional)
  12. Angelita Habr-Gama (additional)
  13. Daniel Giannella-Neto (additional)
  14. Gustavo H. Goldman (additional)
  15. Arthur Gruber (additional)
  16. Christine Hackel (additional)
  17. Edna T. Kimura (additional)
  18. Rui M. B. Maciel (additional)
  19. Suely K. N. Marie (additional)
  20. Elizabeth A. L. Martins (additional)
  21. Marina P. Nóbrega (additional)
  22. Maria Luisa Paçó-Larson (additional)
  23. Maria Inês M. C. Pardini (additional)
  24. Gonçalo G. Pereira (additional)
  25. João Bosco Pesquero (additional)
  26. Vanderlei Rodrigues (additional)
  27. Silvia R. Rogatto (additional)
  28. Ismael D. C. G. da Silva (additional)
  29. Mari C. Sogayar (additional)
  30. Maria de Fátima Sonati (additional)
  31. Eloiza H. Tajara (additional)
  32. Sandro R. Valentini (additional)
  33. Marcio Acencio (additional)
  34. Fernando L. Alberto (additional)
  35. Maria Elisabete J. Amaral (additional)
  36. Ivy Aneas (additional)
  37. Mário Henrique Bengtson (additional)
  38. Dirce M. Carraro (additional)
  39. Alex F. Carvalho (additional)
  40. Lúcia Helena Carvalho (additional)
  41. Janete M. Cerutti (additional)
  42. Maria Lucia C. Corrêa (additional)
  43. Maria Cristina R. Costa (additional)
  44. Cyntia Curcio (additional)
  45. Tsieko Gushiken (additional)
  46. Paulo L. Ho (additional)
  47. Elza Kimura (additional)
  48. Luciana C. C. Leite (additional)
  49. Gustavo Maia (additional)
  50. Paromita Majumder (additional)
  51. Mozart Marins (additional)
  52. Adriana Matsukuma (additional)
  53. Analy S. A. Melo (additional)
  54. Carlos Alberto Mestriner (additional)
  55. Elisabete C. Miracca (additional)
  56. Daniela C. Miranda (additional)
  57. Ana Lucia T. O. Nascimento (additional)
  58. Francisco G. Nóbrega (additional)
  59. Élida P. B. Ojopi (additional)
  60. José Rodrigo C. Pandolfi (additional)
  61. Luciana Gilbert Pessoa (additional)
  62. Paula Rahal (additional)
  63. Claudia A. Rainho (additional)
  64. Nancy da Ro's (additional)
  65. Renata G. de Sá (additional)
  66. Magaly M. Sales (additional)
  67. Neusa P. da Silva (additional)
  68. Tereza C. Silva (additional)
  69. Wilson da Silva (additional)
  70. Daniel F. Simão (additional)
  71. Josane F. Sousa (additional)
  72. Daniella Stecconi (additional)
  73. Fernando Tsukumo (additional)
  74. Valéria Valente (additional)
  75. Heloisa Zalcberg (additional)
  76. Ricardo R. Brentani (additional)
  77. Luis F. L. Reis (additional)
  78. Emmanuel Dias-Neto (additional)
  79. Andrew J. G. Simpson (additional)
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Dates
Type When
Created 23 years, 1 month ago (July 26, 2002, 10:45 a.m.)
Deposited 3 years, 4 months ago (April 13, 2022, 5:07 p.m.)
Indexed 1 year, 2 months ago (June 6, 2024, 5:57 p.m.)
Issued 24 years, 9 months ago (Nov. 7, 2000)
Published 24 years, 9 months ago (Nov. 7, 2000)
Published Online 24 years, 9 months ago (Nov. 7, 2000)
Published Print 24 years, 9 months ago (Nov. 7, 2000)
Funders 0

None

@article{de_Souza_2000, title={Identification of human chromosome 22 transcribed sequences with ORF expressed sequence tags}, volume={97}, ISSN={1091-6490}, url={http://dx.doi.org/10.1073/pnas.97.23.12690}, DOI={10.1073/pnas.97.23.12690}, number={23}, journal={Proceedings of the National Academy of Sciences}, publisher={Proceedings of the National Academy of Sciences}, author={de Souza, Sandro J. and Camargo, Anamaria A. and Briones, Marcelo R. S. and Costa, Fernando F. and Nagai, Maria Aparecida and Verjovski-Almeida, Sergio and Zago, Marco A. and Andrade, Luis Eduardo C. and Carrer, Helaine and El-Dorry, Hamza F. A. and Espreafico, Enilza M. and Habr-Gama, Angelita and Giannella-Neto, Daniel and Goldman, Gustavo H. and Gruber, Arthur and Hackel, Christine and Kimura, Edna T. and Maciel, Rui M. B. and Marie, Suely K. N. and Martins, Elizabeth A. L. and Nóbrega, Marina P. and Paçó-Larson, Maria Luisa and Pardini, Maria Inês M. C. and Pereira, Gonçalo G. and Pesquero, João Bosco and Rodrigues, Vanderlei and Rogatto, Silvia R. and da Silva, Ismael D. C. G. and Sogayar, Mari C. and de Fátima Sonati, Maria and Tajara, Eloiza H. and Valentini, Sandro R. and Acencio, Marcio and Alberto, Fernando L. and Amaral, Maria Elisabete J. and Aneas, Ivy and Bengtson, Mário Henrique and Carraro, Dirce M. and Carvalho, Alex F. and Carvalho, Lúcia Helena and Cerutti, Janete M. and Corrêa, Maria Lucia C. and Costa, Maria Cristina R. and Curcio, Cyntia and Gushiken, Tsieko and Ho, Paulo L. and Kimura, Elza and Leite, Luciana C. C. and Maia, Gustavo and Majumder, Paromita and Marins, Mozart and Matsukuma, Adriana and Melo, Analy S. A. and Mestriner, Carlos Alberto and Miracca, Elisabete C. and Miranda, Daniela C. and Nascimento, Ana Lucia T. O. and Nóbrega, Francisco G. and Ojopi, Élida P. B. and Pandolfi, José Rodrigo C. and Pessoa, Luciana Gilbert and Rahal, Paula and Rainho, Claudia A. and da Ro’s, Nancy and de Sá, Renata G. and Sales, Magaly M. and da Silva, Neusa P. and Silva, Tereza C. and da Silva, Wilson and Simão, Daniel F. and Sousa, Josane F. and Stecconi, Daniella and Tsukumo, Fernando and Valente, Valéria and Zalcberg, Heloisa and Brentani, Ricardo R. and Reis, Luis F. L. and Dias-Neto, Emmanuel and Simpson, Andrew J. G.}, year={2000}, month=nov, pages={12690–12693} }