Abstract
DNA chip technology enables simultaneous examination of how ≈6,200 Saccharomyces cerevisiae gene transcript levels, representing the entire genome, respond to environmental change. By using chips bearing oligonucleotide arrays, we show that, after exposure to the alkylating agent methyl methanesulfonate, ≈325 gene transcript levels are increased and ≈76 are decreased. Of the 21 genes that already were known to be induced by a DNA-damaging agent, 18 can be scored as inducible in this data set, and surprisingly, most of the newly identified inducible genes are induced even more strongly than these 18. We examined 42 responsive and 8 nonresponsive ORFs by conventional Northern blotting, and 48 of these 50 ORFs responded as they did by DNA chip analysis, with magnitudes displaying a correlation coefficient of 0.79. Responsive genes fall into several expected and many unexpected categories. Evidence for the induction of a program to eliminate and replace alkylated proteins is presented.
References
31
Referenced
328
- E Friedberg, G Walker, W Siede DNA Repair and Mutagenesis (Am. Soc. Microbiol., Washington, DC, 1995). / DNA Repair and Mutagenesis by Friedberg E (1995)
10.1091/mbc.7.5.703
- P Herrlich, C Blattner, A Knebel, K Bender, H J Rahmsdorf Biol Chem 378, 1217–1229 (1997). / Biol Chem by Herrlich P (1997)
10.1128/mcb.13.7.4242-4250.1993
10.1073/pnas.85.23.8800
- J B Bachant, S J Elledge DNA Repair in Prokaryotes and Lower Eukaryotes, DNA Damage and Repair, eds J A Nickoloff, M F Hoekstra (Humana, Totowa, NJ) 1 (1998). / DNA Repair in Prokaryotes and Lower Eukaryotes, DNA Damage and Repair by Bachant J B (1998)
10.1128/mcb.4.11.2356-2363.1984
10.1128/mcb.5.1.75-84.1985
10.1073/pnas.86.20.7961
10.1002/j.1460-2075.1990.tb07910.x
10.1093/nar/19.23.6427
- W Xiao, K K Singh, B Chen, L Samson Mol Cell Biol 13, 7213–7221 (1993). / Mol Cell Biol by Xiao W (1993)
10.1073/pnas.92.11.4907
10.1128/MCB.17.11.6223
10.1093/nar/18.10.3091
10.1038/nbt1297-1359
- J Sambrook, E F Fritsch, T Maniatis Molecular Cloning: A Laboratory Manual (Cold Spring Harbor Lab. Press, 2nd Ed., Plainview, NY, 1989). / Molecular Cloning: A Laboratory Manual by Sambrook J (1989)
10.1038/nbt0698-541
10.1038/nbt1296-1675
10.1093/carcin/6.9.1399
10.1074/jbc.271.26.15504
10.1074/jbc.272.37.23086
10.1016/S0092-8674(00)81845-0
10.1128/JVI.72.3.1731-1736.1998
- J E Landers, S L Cassel, D L George Cancer Res 57, 3562–3568 (1997). / Cancer Res by Landers J E (1997)
10.1006/viro.1997.8531
10.1016/S1097-2765(00)80114-8
10.1074/jbc.273.35.22480
10.1038/ng1296-450
10.1093/nar/26.1.73
10.1093/nar/25.1.28
Dates
Type | When |
---|---|
Created | 23 years, 1 month ago (July 26, 2002, 10:39 a.m.) |
Deposited | 3 years, 4 months ago (April 13, 2022, 5:51 p.m.) |
Indexed | 11 months, 2 weeks ago (Sept. 17, 2024, 6:47 a.m.) |
Issued | 26 years, 6 months ago (Feb. 16, 1999) |
Published | 26 years, 6 months ago (Feb. 16, 1999) |
Published Online | 26 years, 6 months ago (Feb. 16, 1999) |
Published Print | 26 years, 6 months ago (Feb. 16, 1999) |
@article{Jelinsky_1999, title={Global response of Saccharomyces cerevisiae to an alkylating agent}, volume={96}, ISSN={1091-6490}, url={http://dx.doi.org/10.1073/pnas.96.4.1486}, DOI={10.1073/pnas.96.4.1486}, number={4}, journal={Proceedings of the National Academy of Sciences}, publisher={Proceedings of the National Academy of Sciences}, author={Jelinsky, Scott A. and Samson, Leona D.}, year={1999}, month=feb, pages={1486–1491} }