Abstract
Molecular dynamics simulations are used to calculate the incoherent neutron scattering spectra of myoglobin between 80 K and 325 K and compared with experimental data. There is good agreement over the entire temperature range for the elastic, quasi-elastic, and inelastic components of the scattering. This provides support for the accuracy of the simulations of the internal motions that make the dominant contributions to the atomic displacements on a time scale of 0.3-100 ps (100-0.3 cm-1). Analysis of the simulations shows that at low temperatures a harmonic description of the molecule is appropriate and that the molecule is trapped in localized regions of conformational space. At higher temperatures the scattering arises from a combination of vibrations within wells (substates) and transitions between them; the latter contribute to the quasi-elastic scattering.
Dates
Type | When |
---|---|
Created | 19 years, 2 months ago (May 31, 2006, 7:33 a.m.) |
Deposited | 3 years, 4 months ago (April 13, 2022, 1:05 p.m.) |
Indexed | 1 hour, 17 minutes ago (Aug. 30, 2025, 1:13 p.m.) |
Issued | 35 years, 6 months ago (Feb. 1, 1990) |
Published | 35 years, 6 months ago (Feb. 1, 1990) |
Published Online | 35 years, 6 months ago (Feb. 1, 1990) |
Published Print | 35 years, 6 months ago (Feb. 1, 1990) |
@article{Smith_1990, title={Dynamics of myoglobin: comparison of simulation results with neutron scattering spectra.}, volume={87}, ISSN={1091-6490}, url={http://dx.doi.org/10.1073/pnas.87.4.1601}, DOI={10.1073/pnas.87.4.1601}, number={4}, journal={Proceedings of the National Academy of Sciences}, publisher={Proceedings of the National Academy of Sciences}, author={Smith, J and Kuczera, K and Karplus, M}, year={1990}, month=feb, pages={1601–1605} }