Abstract
Measurements of the effect of DNA on rates of bimolecular energy transfer between ions provide a direct indication of how cations cluster in regions near DNA and how anions are repelled from the same regions. Energy transfer from luminescent lanthanide ions (in the "rapid-diffusion" limit) probes collision frequencies that are dependent on the equilibrium spatial distributions of ions. The addition of 1 mM DNA (phosphate) to a 2 mM salt solution increases the overall collision frequency between monovalent cations by a factor of 6 +/- 1.5; it increases the divalent-monovalent cation collision frequency by a factor of 29 +/- 3; and it decreases the divalent cation-monovalent anion collision frequency by a factor of 0.24 +/- 0.03. Comparisons are made with the changes in collision frequencies predicted by several different theoretical descriptions of ion distributions. The closest agreement with experimental results for monovalent ions at 1 mM DNA is obtained with a static accessibility-modified discrete charge calculation, based on a detailed molecular model of B-DNA. At high DNA concentration (10 mM), the best results are obtained by numerical solutions of the Poisson-Boltzmann equation for a "soft-rod" model of DNA. Poisson-Boltzmann calculations for a "hard-rod" model greatly overestimate the effects of DNA on collision frequencies, as does a calculation based on counterion-condensation theory.
Dates
Type | When |
---|---|
Created | 19 years, 3 months ago (May 31, 2006, 5:57 a.m.) |
Deposited | 3 years, 4 months ago (April 13, 2022, 12:15 p.m.) |
Indexed | 1 year, 3 months ago (May 29, 2024, 6:30 p.m.) |
Issued | 39 years, 4 months ago (May 1, 1986) |
Published | 39 years, 4 months ago (May 1, 1986) |
Published Online | 39 years, 4 months ago (May 1, 1986) |
Published Print | 39 years, 4 months ago (May 1, 1986) |
@article{Wensel_1986, title={Distribution of ions around DNA, probed by energy transfer.}, volume={83}, ISSN={1091-6490}, url={http://dx.doi.org/10.1073/pnas.83.10.3267}, DOI={10.1073/pnas.83.10.3267}, number={10}, journal={Proceedings of the National Academy of Sciences}, publisher={Proceedings of the National Academy of Sciences}, author={Wensel, T G and Meares, C F and Vlachy, V and Matthew, J B}, year={1986}, month=may, pages={3267–3271} }