Abstract
d -alanine- d -lactate ligase from Enterococcus faecium BM4147 is directly responsible for the biosynthesis of alternate cell-wall precursors in bacteria, which are resistant to the glycopeptide antibiotic vancomycin. The crystal structure has been determined with data extending to 2.5-Å resolution. This structure shows that the active site has unexpected interactions and is distinct from previous models for d -alanyl- d -lactate ligase mechanistic studies. It appears that the preference of the enzyme for lactate as a ligand over d -alanine could be mediated by electrostatic effects and/or a hydrogen-bonding network, which principally involve His-244. The structure of d -alanyl- d -lactate ligase provides a revised interpretation of the molecular events that lead to vancomycin resistance.
References
27
Referenced
60
-
R Novak, B Henriques, E Charpentier, S Normark, E Tuomanen Nature (London) 399, 580–593 (1999).
(
10.1038/21202
) / Nature (London) by Novak R (1999) -
C T Walsh, S L Fisher, I-S Park, M Prahalad, Z Wu Chem Biol 3, 21–28 (1996).
(
10.1016/S1074-5521(96)90079-4
) / Chem Biol by Walsh C T (1996) -
T D H Bugg, G Wright, S Dutka-Malen, M Arthur, P Courvalin, C T Walsh Biochemistry 30, 10408–10415 (1991).
(
10.1021/bi00107a007
) / Biochemistry by Bugg T D H (1991) -
I-S Park, C-H Lin, C T Walsh Biochemistry 35, 10464–10471 (1996).
(
10.1021/bi9603128
) / Biochemistry by Park I-S (1996) -
P E Reynolds, F Depardieu, S Dutka-Malen, M Arthur, P Courvalin Mol Microbiol 13, 1065–1070 (1994).
(
10.1111/j.1365-2958.1994.tb00497.x
) / Mol Microbiol by Reynolds P E (1994) -
C Fan, P C Moews, C T Walsh, J R Knox Science 266, 439–443 (1995).
(
10.1126/science.7939684
) / Science by Fan C (1995) -
B A Ellsworth, N J Tom, P A Bartlett Chem Biol 3, 37–44 (1996).
(
10.1016/S1074-5521(96)90082-4
) / Chem Biol by Ellsworth B A (1996) -
T Huyton, D I Roper Acta Crystallogr D 55, 1481–1483 (1999).
(
10.1107/S0907444999007155
) / Acta Crystallogr D by Huyton T (1999) -
Z Otwinowski, W Minor Methods Enzymol 276, 307–326 (1997).
(
10.1016/S0076-6879(97)76066-X
) / Methods Enzymol by Otwinowski Z (1997) -
A A Vagin, A Teplyakov J Appl Crystallogr 30, 1022–1025 (1997).
(
10.1107/S0021889897006766
) / J Appl Crystallogr by Vagin A A (1997) -
C Fan, I-S Park, C T Walsh, J R Knox Biochemistry 36, 2531–2538 (1997).
(
10.1021/bi962431t
) / Biochemistry by Fan C (1997) -
A T Brunger Nature (London) 355, 472–475 (1992).
(
10.1038/355472a0
) / Nature (London) by Brunger A T (1992) -
G N Murshudov, A A Vagin, E J Dodson Acta Crystallogr D 53, 240–255 (1997).
(
10.1107/S0907444996012255
) / Acta Crystallogr D by Murshudov G N (1997) - Acta Crystallogr D 53, 240–255 (1994). / Acta Crystallogr D (1994)
-
K Cowtan, P Main Acta Crystallogr D 54, 487–493 (1998).
(
10.1107/S0907444997011980
) / Acta Crystallogr D by Cowtan K (1998) -
C Fan, P C Moews, P C Shi, C T Walsh, J R Knox Proc Natl Acad Sci USA 92, 1172–1176 (1995).
(
10.1073/pnas.92.4.1172
) / Proc Natl Acad Sci USA by Fan C (1995) -
P J Artymiuk, A R Poirrett, D W Rice, P Willett Nat Struct Biol 3, 128–132 (1996).
(
10.1038/nsb0296-128
) / Nat Struct Biol by Artymiuk P J (1996) -
N Kobayashi, N Go Nat Struct Biol 4, 6–7 (1997).
(
10.1038/nsb0197-6
) / Nat Struct Biol by Kobayashi N (1997) -
M Y Galperin, E V Koonin Protein Sci 6, 2639–2643 (1997).
(
10.1002/pro.5560061218
) / Protein Sci by Galperin M Y (1997) -
Y Shi, C T Walsh Biochemistry 34, 2768–2776 (1995).
(
10.1021/bi00009a005
) / Biochemistry by Shi Y (1995) -
C Fan, I-S Park, C T Walsh, J R Knox Biochemistry 36, 2531–2538 (1997).
(
10.1021/bi962431t
) / Biochemistry by Fan C (1997) -
I A D Lessard, V L Healy, I-S Park, C T Walsh Biochemistry 38, 14006–14022 (1999).
(
10.1021/bi991384c
) / Biochemistry by Lessard I A D (1999) -
I-S Park, C T Walsh J Biol Chem 272, 9210–9214 (1997).
(
10.1074/jbc.272.14.9210
) / J Biol Chem by Park I-S (1997) -
A P Kuzin, T Sun, J Jorczak-Baillass, V L Healy, C T Walsh, J R Knox Structure (London) 8, 463–470 (2000).
(
10.1016/S0969-2126(00)00129-5
) / Structure (London) by Kuzin A P (2000) -
S Evers, P Courvalin J Bacteriol 178, 1302–1309 (1996).
(
10.1128/jb.178.5.1302-1309.1996
) / J Bacteriol by Evers S (1996) -
S Dutka-Malen, C Molinas, M Arthur, P Courvalin Gene 112, 53–58 (1992).
(
10.1016/0378-1119(92)90302-6
) / Gene by Dutka-Malen S (1992) -
I-L Park, C-H Lin, C T Walsh Proc Natl Acad Sci USA 94, 10040–10044 (1997).
(
10.1073/pnas.94.19.10040
) / Proc Natl Acad Sci USA by Park I-L (1997)
Dates
Type | When |
---|---|
Created | 23 years, 1 month ago (July 26, 2002, 10:32 a.m.) |
Deposited | 3 years, 2 months ago (June 7, 2022, 12:47 a.m.) |
Indexed | 2 months, 3 weeks ago (June 6, 2025, 1:48 a.m.) |
Issued | 25 years, 1 month ago (July 25, 2000) |
Published | 25 years, 1 month ago (July 25, 2000) |
Published Online | 25 years, 1 month ago (July 25, 2000) |
Published Print | 25 years ago (Aug. 1, 2000) |
@article{Roper_2000, title={The molecular basis of vancomycin resistance in clinically relevant Enterococci: Crystal structure of <scp>d</scp> -alanyl- <scp>d</scp> -lactate ligase (VanA)}, volume={97}, ISSN={1091-6490}, url={http://dx.doi.org/10.1073/pnas.150116497}, DOI={10.1073/pnas.150116497}, number={16}, journal={Proceedings of the National Academy of Sciences}, publisher={Proceedings of the National Academy of Sciences}, author={Roper, David I. and Huyton, Trevor and Vagin, Alexei and Dodson, Guy}, year={2000}, month=jul, pages={8921–8925} }